From d40280209c96c488783662f6d57c7bb993b3d888 Mon Sep 17 00:00:00 2001
From: Tru Huynh <tru@pasteur.fr>
Date: Tue, 4 Oct 2022 16:36:53 +0200
Subject: [PATCH] docker initial CI

---
 .github/workflows/docker-manual-deploy.yml | 57 ++++++++++++++++++++++
 Dockerfile                                 | 19 ++++++++
 2 files changed, 76 insertions(+)
 create mode 100644 .github/workflows/docker-manual-deploy.yml
 create mode 100644 Dockerfile

diff --git a/.github/workflows/docker-manual-deploy.yml b/.github/workflows/docker-manual-deploy.yml
new file mode 100644
index 0000000..4d06eb7
--- /dev/null
+++ b/.github/workflows/docker-manual-deploy.yml
@@ -0,0 +1,57 @@
+name: Docker
+
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+on:
+  workflow_dispatch:
+
+env:
+  # Use docker.io for Docker Hub if empty
+  REGISTRY: ghcr.io
+  # github.repository as <account>/<repo>
+  IMAGE_NAME: ${{ github.repository }}
+
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      packages: write
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v2
+
+      # Login against a Docker registry except on PR
+      # https://github.com/docker/login-action
+      - name: Log into registry ${{ env.REGISTRY }}
+        if: github.event_name != 'pull_request'
+        uses: docker/login-action@28218f9b04b4f3f62068d7b6ce6ca5b26e35336c
+        with:
+          registry: ${{ env.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      # Extract metadata (tags, labels) for Docker
+      # https://github.com/docker/metadata-action
+      - name: Extract Docker metadata
+        id: meta
+        uses: docker/metadata-action@98669ae865ea3cffbcbaa878cf57c20bbf1c6c38
+        with:
+          images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
+
+      # Build and push Docker image with Buildx (don't push on PR)
+      # https://github.com/docker/build-push-action
+      - name: Build and push Docker image
+        uses: docker/build-push-action@ad44023a93711e3deb337508980b4b5e9bcdc5dc
+        with:
+          context: .
+          file: Dockerfile
+          push: ${{ github.event_name != 'pull_request' }}
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}
diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 0000000..e03a303
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,19 @@
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#      http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+FROM  continuumio/miniconda
+
+WORKDIR=/opt
+RUN	git clone https://github.com/3dem/model-angelo.git && \
+	cd model-angelo && \
+	bash install_script.sh
+