From ce10d8ffae08b990abb84fb9bc534620aaf4ffc1 Mon Sep 17 00:00:00 2001
From: Hugh Sorby <h.sorby@auckland.ac.nz>
Date: Fri, 31 Jan 2025 14:49:09 +1300
Subject: [PATCH 1/2] Convert from setup.py to pyproject.toml.

---
 pyproject.toml                 | 31 +++++++++++++++++++++
 setup.py                       | 51 ----------------------------------
 src/scaffoldfitter/__init__.py |  3 ++
 3 files changed, 34 insertions(+), 51 deletions(-)
 create mode 100644 pyproject.toml
 delete mode 100644 setup.py

diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 0000000..5607971
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,31 @@
+[build-system]
+requires = ["setuptools>=61.0", "setuptools_scm>=8.0"]
+build-backend = "setuptools.build_meta"
+
+[tool.setuptools-git-versioning]
+enabled = true
+
+[project]
+name = "scaffoldfitter"
+dynamic = ["version"]
+keywords = ["Medical", "Physiology", "Anatomical", "Mesh", "Finite Element", "Fitting", "SPARC"]
+readme = "README.rst"
+license = {file = "LICENSE"}
+authors = [
+    { name="Richard Christie", email="r.christie@auckland.ac.nz" },
+]
+dependencies = [
+    "cmlibs.maths >= 0.6.2",
+    "cmlibs.utils >= 0.6",
+    "cmlibs.zinc >= 4.1"
+]
+description = "Scaffold/model geometric fitting library using Zinc."
+requires-python = ">=3.8"
+classifiers = [
+    "Programming Language :: Python :: 3",
+    "License :: OSI Approved :: Apache Software License",
+    "Operating System :: OS Independent",
+    "Topic :: Scientific/Engineering :: Medical Science Apps.",
+]
+
+[tool.setuptools_scm]
diff --git a/setup.py b/setup.py
deleted file mode 100644
index e5d79cc..0000000
--- a/setup.py
+++ /dev/null
@@ -1,51 +0,0 @@
-import io
-import os
-
-from setuptools import setup, find_packages
-
-SETUP_DIR = os.path.dirname(os.path.abspath(__file__))
-
-
-# List all of your Python package dependencies in the
-# requirements.txt file
-
-def readfile(filename, split=False):
-    with io.open(filename, encoding="utf-8") as stream:
-        if split:
-            return stream.read().split("\n")
-        return stream.read()
-
-
-readme = readfile("README.rst", split=True)
-# For requirements not hosted on PyPi place listings
-# into the 'requirements.txt' file.
-requires = [
-    # minimal requirements listing
-    "cmlibs.maths >= 0.3",
-    "cmlibs.utils >= 0.10",
-    "cmlibs.zinc >= 4.0"
-]
-readme.extend(['', 'License', '=======', '', '::', ''])
-source_license = readfile("LICENSE")
-
-setup(
-    name="scaffoldfitter",
-    version="0.9.0",
-    description="Scaffold/model geometric fitting library using Zinc.",
-    long_description="\n".join(readme) + source_license,
-    long_description_content_type="text/x-rst",
-    classifiers=[
-        "Development Status :: 3 - Alpha",
-        "Programming Language :: Python",
-        "Topic :: Scientific/Engineering :: Medical Science Apps."
-    ],
-    author="Auckland Bioengineering Institute",
-    author_email="r.christie@auckland.ac.nz",
-    url="https://github.com/ABI-Software/scaffoldfitter",
-    license="Apache Software License",
-    packages=find_packages("src"),
-    package_dir={"": "src"},
-    include_package_data=True,
-    zip_safe=False,
-    install_requires=requires,
-)
diff --git a/src/scaffoldfitter/__init__.py b/src/scaffoldfitter/__init__.py
index e69de29..e112ca8 100644
--- a/src/scaffoldfitter/__init__.py
+++ b/src/scaffoldfitter/__init__.py
@@ -0,0 +1,3 @@
+import importlib.metadata
+
+__version__ = importlib.metadata.version("scaffoldfitter")

From 89185a67a81531b86da448aab6dc69a4e70f5f23 Mon Sep 17 00:00:00 2001
From: Hugh Sorby <h.sorby@auckland.ac.nz>
Date: Mon, 3 Feb 2025 13:36:28 +1300
Subject: [PATCH 2/2] Set minimum version of cmlibs.utils to 0.10.0.

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 5607971..a4e1501 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -16,7 +16,7 @@ authors = [
 ]
 dependencies = [
     "cmlibs.maths >= 0.6.2",
-    "cmlibs.utils >= 0.6",
+    "cmlibs.utils >= 0.10.0",
     "cmlibs.zinc >= 4.1"
 ]
 description = "Scaffold/model geometric fitting library using Zinc."