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Merge pull request #10 from AlexTate/ShortSeq192

Pull request merge
AlexTatepushed 12 commits to main • 0d05469…b11f270 • 
on Mar 24, 2024

Adding a note about non-NT character valiation to the Construction fr…

AlexTatepushed 5 commits to ShortSeq192 • ec444ff…54dd799 • 
on Mar 24, 2024

Updating the memory usage chart to reflect the new ShortSeq192 class

AlexTatecreated ShortSeq192 • ec444ff • 
on Mar 24, 2024

Merge pull request #9 from AlexTate/slice-subscript-refactor

Pull request merge
AlexTatepushed 17 commits to main • efa57b0…0d05469 • 
on Mar 20, 2024

Updating the mem_by_length plot to show off the recent efficiency imp…

AlexTatepushed 2 commits to slice-subscript-refactor • a817972…197f1a8 • 
on Mar 20, 2024

Refactoring ShortSeq128 to store packed sequences in a 2 element uint…

AlexTatepushed 1 commit to slice-subscript-refactor • aebf940…a817972 • 
on Mar 20, 2024

Re-adding -march=native as a troubleshooting step for mysterious test…

AlexTatepushed 1 commit to slice-subscript-refactor • a57dcc9…aebf940 • 
on Feb 25, 2024

Various minor cleanups

AlexTatecreated slice-subscript-refactor • a57dcc9 • 
on Feb 25, 2024

Merge pull request #8 from AlexTate/benchmarks

Pull request merge
AlexTatepushed 2 commits to main • ff5f847…efa57b0 • 
on Dec 20, 2023

Update README.md

AlexTatepushed 1 commit to benchmarks • 684f91e…8c260ea • 
on Dec 20, 2023

Merge pull request #7 from AlexTate/benchmarks

Pull request merge
AlexTatepushed 2 commits to main • 46a688e…ff5f847 • 
on Dec 20, 2023

Adding a basic benchmarking suite and plots to visualize performance.

AlexTatecreated benchmarks • 684f91e • 
on Dec 20, 2023

Merge pull request #6 from AlexTate/ShortSeqVar_bloom_filter

Pull request merge
AlexTatepushed 5 commits to main • cb79c4c…46a688e • 
on Dec 11, 2023

Removing note about user responsibility for ensuring long sequence in…

AlexTatepushed 1 commit to ShortSeqVar_bloom_filter • e20909c…3bd0d91 • 
on Dec 11, 2023

Merge branch 'main' into ShortSeqVar_bloom_filter

AlexTatepushed 7 commits to ShortSeqVar_bloom_filter • bf7102d…e20909c • 
on Dec 11, 2023

ShortSeqVar objects now validate input characters and will reject any…

AlexTatecreated ShortSeqVar_bloom_filter • bf7102d • 
on Dec 10, 2023

Merge pull request #5 from AlexTate/api-cleanup

Pull request merge
AlexTatepushed 6 commits to main • 4434683…cb79c4c • 
on Dec 10, 2023

Update check.yml

AlexTatepushed 1 commit to api-cleanup • d5ec428…cb64a0c • 
on Dec 10, 2023

A little extra polish on the usage section

AlexTatepushed 1 commit to api-cleanup • b504777…d5ec428 • 
on Dec 8, 2023

Adding __sizeof__ to ShortSeqVar so that it can correctly report its …

AlexTatepushed 3 commits to api-cleanup • 531762f…b504777 • 
on Dec 8, 2023

Merge pull request #4 from AlexTate/api-cleanup

Pull request merge
AlexTatepushed 5 commits to main • af1a11d…4434683 • 
on Dec 8, 2023

Giving py38 support another try. The error message I received before …

AlexTatepushed 1 commit to api-cleanup • adf9f65…531762f • 
on Dec 8, 2023

Updating MANIFEST.in and tox config for the new package structure

AlexTatepushed 1 commit to api-cleanup • bc6f835…adf9f65 • 
on Dec 7, 2023

Fixing import statement

AlexTatepushed 1 commit to api-cleanup • fb72688…bc6f835 • 
on Dec 7, 2023

Major changes to API, package structure, and name conventions. These …

AlexTatecreated api-cleanup • fb72688 • 
on Dec 7, 2023

Merge pull request #3 from AlexTate/operator-expansion

Pull request merge
AlexTatepushed 5 commits to main • 59dad61…af1a11d • 
on Dec 6, 2023

Adding unit tests for hamming distance. Also adding a test that perfo…

AlexTatepushed 15 commits to operator-expansion • c4af142…2a0d267 • 
on Dec 6, 2023

Merge pull request #2 from AlexTate/tox

Pull request merge
AlexTatepushed 9 commits to main • 7c322c0…59dad61 • 
on Dec 6, 2023

Removing Python 3.8 from supported range for now. For some reason thi…

AlexTatepushed 1 commit to tox • 0bce01a…49338ec • 
on Dec 6, 2023

Opening the rest of the test matrix

AlexTatepushed 1 commit to tox • e1044f2…0bce01a • 
on Dec 5, 2023