From 15c23b8cbe67ac4dcedf28fd822346d530212fff Mon Sep 17 00:00:00 2001 From: Ally Hawkins Date: Tue, 7 Jan 2025 12:19:37 -0600 Subject: [PATCH] use versioned cl ont file --- .../scripts/02-prepare-consensus-reference.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/analyses/cell-type-consensus/scripts/02-prepare-consensus-reference.R b/analyses/cell-type-consensus/scripts/02-prepare-consensus-reference.R index 9361d4943..4171ed363 100644 --- a/analyses/cell-type-consensus/scripts/02-prepare-consensus-reference.R +++ b/analyses/cell-type-consensus/scripts/02-prepare-consensus-reference.R @@ -16,7 +16,7 @@ consensus_ref_file <- file.path(module_base, "references", "consensus-cell-type- # Prep references -------------------------------------------------- # grab obo file -cl_ont <- ontologyIndex::get_ontology("http://purl.obolibrary.org/obo/cl-basic.obo") +cl_ont <- ontologyIndex::get_ontology("http://purl.obolibrary.org/obo/cl/releases/2024-09-26/cl-basic.obo") # set up the graph to use for assigning LCA terms parent_terms <- cl_ont$parents