From 965e445f53f1d5973cf4c654d60eb4a9a4491926 Mon Sep 17 00:00:00 2001 From: Ally Hawkins <54039191+allyhawkins@users.noreply.github.com> Date: Thu, 9 Jan 2025 12:27:08 -0600 Subject: [PATCH] Make file search more specific Co-authored-by: Joshua Shapiro --- analyses/cell-type-consensus/assign-consensus-celltypes.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/analyses/cell-type-consensus/assign-consensus-celltypes.sh b/analyses/cell-type-consensus/assign-consensus-celltypes.sh index c48e5c680..83897d93b 100755 --- a/analyses/cell-type-consensus/assign-consensus-celltypes.sh +++ b/analyses/cell-type-consensus/assign-consensus-celltypes.sh @@ -25,7 +25,7 @@ panglao_ref_file="references/panglao-cell-type-ontologies.tsv" consensus_ref_file="references/consensus-cell-type-reference.tsv" # run script to export tsv file on all processed objects -for sce_file in $data_dir/*/SCPCS*/*_processed.rds; do +for sce_file in $data_dir/SCPCP*/SCPCS*/*_processed.rds; do # define library ID library_id=$(basename $sce_file | sed 's/_processed.rds$//')