From ccbebe20e14d20a0752cb990095358ba1a687934 Mon Sep 17 00:00:00 2001 From: Ally Hawkins Date: Mon, 13 Jan 2025 15:33:54 -0600 Subject: [PATCH] add blueprint_annotation_cl to docs --- analyses/cell-type-consensus/README.md | 2 +- analyses/cell-type-consensus/references/README.md | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/analyses/cell-type-consensus/README.md b/analyses/cell-type-consensus/README.md index 9789083d4..745327639 100644 --- a/analyses/cell-type-consensus/README.md +++ b/analyses/cell-type-consensus/README.md @@ -81,7 +81,7 @@ The `scpca-consensus-celltype-assignments.tsv` file contains cell type annotatio | `cellassign_celltype_annotation` | Cell type assigned by `CellAssign`; this term is the original term found in the `PanglaoDB` reference file | | `panglao_ontology` | Cell type ontology term associated with the term found in `cellassign_celltype_annotation` column | | `panglao_annotation` | Name associated with the cell type ontology term in `panglao_ontology` | -| `blueprint_annotation_fine` | Fine grained cell type annotation (`label.fine`) from `BlueprintEncodeData` associated with the `singler_celltype_ontology` term | +| `blueprint_annotation_cl` | Name associated with the cell type ontology term in `singler_celltype_ontology` | | `consensus_ontology` | Cell type ontology term assigned as the consensus cell type | | `consensus_annotation` | Name associated with the assigned consensus cell type in `consensus_ontology` | diff --git a/analyses/cell-type-consensus/references/README.md b/analyses/cell-type-consensus/references/README.md index 2a494a9f7..b9e99d68b 100644 --- a/analyses/cell-type-consensus/references/README.md +++ b/analyses/cell-type-consensus/references/README.md @@ -42,6 +42,7 @@ The table includes the following columns: | `blueprint_ontology` | Cell type ontology term for `BlueprintEncodeData` cell type | | `blueprint_annotation_main` | Original name for the cell type as set by `BlueprintEncodeData` (main term) | | `blueprint_annotation_fine` | Original name for the cell type as set by `BlueprintEncodeData` (fine term) | +| `blueprint_annotation_cl` | Name for the cell type defined by [Cell Ontology](https://www.ebi.ac.uk/ols4/ontologies/cl) | | `consensus_ontology` | Cell type ontology term for consensus cell type | | `consensus_annotation` | Human readable name for the consensus cell type |