From 4de9d962e9853469c1480f05119bade83a555028 Mon Sep 17 00:00:00 2001
From: Ally Hawkins <54039191+allyhawkins@users.noreply.github.com>
Date: Thu, 7 Dec 2023 09:32:59 -0600
Subject: [PATCH 1/3] use 128 gb for cellassign

---
 config/process_base.config    | 3 +++
 modules/classify-celltypes.nf | 2 +-
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/config/process_base.config b/config/process_base.config
index 4b6f612c..4b86bbe5 100644
--- a/config/process_base.config
+++ b/config/process_base.config
@@ -21,6 +21,9 @@ process{
   withLabel: mem_32 {
     memory = {check_memory(32.GB * task.attempt)}
   }
+  withLabel: mem_128 {
+    memory = {check_memory(128.GB * task.attempt)}
+  }
   withLabel: cpus_2  {
     cpus = {check_cpus(2)}
   }
diff --git a/modules/classify-celltypes.nf b/modules/classify-celltypes.nf
index 8e8081bf..45fc6bb5 100644
--- a/modules/classify-celltypes.nf
+++ b/modules/classify-celltypes.nf
@@ -45,7 +45,7 @@ process classify_cellassign {
       mode: 'copy',
       pattern: "${cellassign_dir}"
     )
-  label 'mem_32'
+  label 'mem_128'
   label 'cpus_12'
   tag "${meta.library_id}"
   input:

From c29960a83b337948649f29876850116f08f8d32f Mon Sep 17 00:00:00 2001
From: Ally Hawkins <ally.hawkins@ccdatalab.org>
Date: Thu, 7 Dec 2023 09:35:35 -0600
Subject: [PATCH 2/3] use 32 cpus

---
 config/process_base.config    | 3 +++
 modules/classify-celltypes.nf | 2 +-
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/config/process_base.config b/config/process_base.config
index 4b86bbe5..8a836959 100644
--- a/config/process_base.config
+++ b/config/process_base.config
@@ -36,6 +36,9 @@ process{
   withLabel: cpus_12 {
     cpus = {check_cpus(12)}
   }
+  withLabel: cpus_32 {
+    cpus = {check_cpus(32)}
+  }
 }
 
 
diff --git a/modules/classify-celltypes.nf b/modules/classify-celltypes.nf
index 45fc6bb5..9380450f 100644
--- a/modules/classify-celltypes.nf
+++ b/modules/classify-celltypes.nf
@@ -46,7 +46,7 @@ process classify_cellassign {
       pattern: "${cellassign_dir}"
     )
   label 'mem_128'
-  label 'cpus_12'
+  label 'cpus_32'
   tag "${meta.library_id}"
   input:
     tuple val(meta), path(processed_rds), path(cellassign_reference_file)

From d6f3a547f85cbff2d0cdf97520de067228e0147f Mon Sep 17 00:00:00 2001
From: Ally Hawkins <ally.hawkins@ccdatalab.org>
Date: Thu, 7 Dec 2023 10:02:31 -0600
Subject: [PATCH 3/3] only 24 cpus

---
 config/process_base.config    | 4 ++--
 modules/classify-celltypes.nf | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/config/process_base.config b/config/process_base.config
index 8a836959..7b198202 100644
--- a/config/process_base.config
+++ b/config/process_base.config
@@ -36,8 +36,8 @@ process{
   withLabel: cpus_12 {
     cpus = {check_cpus(12)}
   }
-  withLabel: cpus_32 {
-    cpus = {check_cpus(32)}
+  withLabel: cpus_24 {
+    cpus = {check_cpus(24)}
   }
 }
 
diff --git a/modules/classify-celltypes.nf b/modules/classify-celltypes.nf
index 9380450f..3719eb37 100644
--- a/modules/classify-celltypes.nf
+++ b/modules/classify-celltypes.nf
@@ -46,7 +46,7 @@ process classify_cellassign {
       pattern: "${cellassign_dir}"
     )
   label 'mem_128'
-  label 'cpus_32'
+  label 'cpus_24'
   tag "${meta.library_id}"
   input:
     tuple val(meta), path(processed_rds), path(cellassign_reference_file)