v21.09

Revert "DPL: add wildcards when creating matchers via DataDescriptorM…

v21.07

Updated README (#5458)

Co-authored-by: GitHub Action Bot <[email protected]>

v21.05

Changes since v21.03

Changes in Analysis

• #5258 2021-01-22: Analysis/Task/PWGDQ: remove unnecessary macro by @dsekihat
• #5260 2021-01-22: PID: Remove exp values from tiny PID tables by @njacazio
• #5255 2021-01-22: adding collision selections by @nzardosh
• #5270 2021-01-23: Revert "Add full table writing tasks for D0 and Lc (#4910)" by @ginnocen
• #5265 2021-01-24: PWGHF: Little fix of the J/ψ → e+ e- code. by @vkucera
• #5275 2021-01-25: updating nuclei task for skimming by @akalweit
• #5288 2021-01-26: PWGHF: Update selection on Dplus flag by @fcatalan92
• #5299 2021-01-26: removing TPerfStats by @jgrosseo
• #5313 2021-01-27: DPL / DPL Analysis: Introduce LabeledArray as an option for Variant by @aalkin
• #5266 2021-01-27: DPL Analysis: make HistogramRegistry support StepTHn by @mario-krueger
• #5277 2021-01-27: PWGHF: Add simple task dedicated to efficiency and one for QA by @njacazio
• #5368 2021-02-03: Splitting IO and wait time in metrics by @jgrosseo
• #5390 2021-02-08: DPL: fix for sending configuration with spaces by @aalkin
• #5393 2021-02-10: PWGHF: Change the eta cut with the Y cut in the tasks by @DelloStritto
• #5420 2021-02-11: Apply git clang-format to Analysis. by @vkucera
• #5358 2021-02-11: PWGHF: rework b+ task template with grouping by @aalkin
• #5421 2021-02-11: add (DCA,Pt,Mass) histogram to analyser - switch to histogram registry by @aimeric-landou

Changes in Common

• #5280 2021-01-25: Use global track indices for cross-detector matches by @shahor02
• #5371 2021-02-03: DPL: send error count in a delayed manner by @ktf
• #5378 2021-02-04: Fix: further cleanup of redundant labels by @shahor02
• #5383 2021-02-06: [ITS vertexer] Fix compilation with ITS debug by @mconcas
• #5427 2021-02-10: Apply git clang-format to GPU. by @vkucera
• #5414 2021-02-10: Changed log message from WARNING to DEBUG. by @pbuehler
• #5423 2021-02-10: Monitoring usage cleanup in DPL by @ktf
• #5440 2021-02-11: Fix mem problems related to RootSerializableKeyValStore by @sawenzel
• #5425 2021-02-11: GPU: Add SMatrixGPU and Fwd decls by @mconcas

Changes in DataFormats

• #5230 2021-01-22: Pileup and calibration DA for PHOS and CPV by @peressounko
• #5250 2021-01-22: Raw2Digits and Trigger by @mbroz84
• #5267 2021-01-23: Fix in indexing for Vertex-Track matching by @shahor02
• #5286 2021-01-25: Fix daughter labels when running parallel merger by @preghenella
• #5281 2021-01-25: Fix: increment MCEventHeader class version by @shahor02
• #5280 2021-01-25: Use global track indices for cross-detector matches by @shahor02
• #5376 2021-02-03: Fix: ensure exact target X assignment in track propagation by @shahor02
• #5366 2021-02-03: Fixes in MCCompLabel, cleanup of redundant labels in matching by @shahor02
• #5378 2021-02-04: Fix: further cleanup of redundant labels by @shahor02
• #5383 2021-02-06: [ITS vertexer] Fix compilation with ITS debug by @mconcas
• #5397 2021-02-06: fix: missing reset in its CompressedClusters by @shahor02
• #5411 2021-02-08: Developments for pedestal calibration in DPL + misc by @wiechula
• #5445 2021-02-11: Fix codechecker errors by @davidrohr
• #5410 2021-02-11: Fixes for TOF CTF creation by @noferini
• #5424 2021-02-11: [O2-2018] Changes to allow usage of either v2 or v3 of Microsoft GSL. by @aphecetche

Changes in Detectors

• #5230 2021-01-22: Pileup and calibration DA for PHOS and CPV by @peressounko
• #5250 2021-01-22: Raw2Digits and Trigger by @mbroz84
• #5269 2021-01-23: Create TPC output tracks directly in O2 format on the GPU and write directly to SHM buffer by @davidrohr
• #5271 2021-01-23: Fix codechecker violations by @davidrohr
• #5267 2021-01-23: Fix in indexing for Vertex-Track matching by @shahor02
• #5268 2021-01-23: Fix: default TPC reco output names propagated to dependent code by @shahor02
• #5262 2021-01-23: adding macro to create space charge density maps from simulations by @matthias-kleiner
• #5256 2021-01-23: file reader for TPC Tracks and Clusters (+ MC info) by @tklemenz
• #5278 2021-01-25: Cosmic tracking mode added for ITS by @shahor02
• #5272 2021-01-25: Fix codechecker warnings by @mconcas
• #5285 2021-01-25: Fixes for TPC buffer alignment / 0-size buffers by @davidrohr
• #5276 2021-01-25: Minor improvements by @davidrohr
• #5280 2021-01-25: Use global track indices for cross-detector matches by @shahor02
• #5279 2021-01-26: CPV geometry fix, run3 raw format. fix O2-1991 by @peressounko
• #5249 2021-01-26: TPCClusterFinder: Improve performance of noisy pad filter on CPU. by @fweig
• #5320 2021-01-27: Add option to create an o2 propagator instance uninitialized to be used with external matLut / gpuFieldMap by @davidrohr
• #5302 2021-01-27: Remove std::memcpy while processing data in compressor task by @preghenella
• #5364 2021-02-02: Templatize PrimaryVertexer inputs by @shahor02
• #5375 2021-02-03: Digits labels should be read via ConstMCTruthCon...

v21.03

Changes since v21.01

Changes in Analysis

• #5160 2021-01-12: add alien SE by @jgrosseo
• #5155 2021-01-13: Add multiplicity distribution task by @jgrosseo
• #5177 2021-01-13: AliEn metrics by @jgrosseo
• #5158 2021-01-13: use filters by @jgrosseo
• #5174 2021-01-14: Add histrogram register and track selection by @lbariogl
• #5183 2021-01-14: Adding opening and run time metrics by @jgrosseo
• #5195 2021-01-15: fix for 2 readers and 1 input file by @jgrosseo
• #5200 2021-01-16: PWGHF changing default preselection values for hyperloop by @nzardosh
• #5150 2021-01-16: PWGHF: fix of the histogram registry in the Lc task by @DelloStritto
• #5205 2021-01-18: Change task names, move initializers by @ddobrigk
• #5204 2021-01-18: PWGHF: Use pre-selections for Dplus by @fcatalan92
• #5210 2021-01-18: small bug (re)fix, tpc momentum for dedx instead pvtx by @akalweit
• #5182 2021-01-19: Add split tables per particle species in PID response by @njacazio
• #5223 2021-01-19: PWGHF : syncing decays in the preselection with enums used for MC by @nzardosh
• #5206 2021-01-19: TableMaker task updated to use configurables for system type, event and track selections by @iarsene
• #5214 2021-01-20: Add tables for the compressed Nsigma values by @njacazio
• #5238 2021-01-20: Fix missing TPC split task in CMakeFile by @njacazio
• #5232 2021-01-20: PWGHF : further restricitng HF preselection for hyperloop testing by @nzardosh
• #5201 2021-01-20: PWGHF, RecoDecay: Add gen. level pT of matched D0 candidates. by @vkucera
• #5218 2021-01-20: PWGHF: Adding flag selection in the hadron tasks by @DelloStritto
• #5224 2021-01-20: PWGHF: Shift decay type values to allow usage in arrays and bitmaps. by @vkucera
• #5217 2021-01-20: Setting up Skimming Tasks - spectraTPC by @nzardosh
• #5245 2021-01-21: fix filtering and minor edits by @aimeric-landou

Changes in Common

• #5178 2021-01-13: Fixes in entropy compression memory management by @shahor02
• #5184 2021-01-14: Update CommonUtilsLinkDef.h by @sawenzel
• #5199 2021-01-15: (O2-1203) [CTF] use merging/splitting iterators during CTF ecoding/decoding for TPC by @MichaelLettrich
• #5203 2021-01-17: DPL: move driver communication to a separate Service by @ktf
• #5228 2021-01-19: o2-sim: Make configfile prefixed with correct name by @sawenzel
• #5234 2021-01-20: Abstract and track aggregated containers/indices + use in vertexers by @shahor02
• #5217 2021-01-20: Setting up Skimming Tasks - spectraTPC by @nzardosh
• #5237 2021-01-20: adding protection for float truncation by @nzardosh
• #5247 2021-01-21: Fix compiler warning about signed / unsigned int by @davidrohr

Changes in DataFormats

• #5163 2021-01-12: Bring back info treatment in MCEventHeader by @sawenzel
• #5178 2021-01-13: Fixes in entropy compression memory management by @shahor02
• #5199 2021-01-15: (O2-1203) [CTF] use merging/splitting iterators during CTF ecoding/decoding for TPC by @MichaelLettrich
• #5192 2021-01-15: FT0 LUT prepared as Singleton for DigitBlockFT0 usage by @afurs
• #5226 2021-01-19: Bugfix: WorkflowHelper.h was not installled by @davidrohr
• #5227 2021-01-19: Check for selective primary transport also in case of parallel sim by @preghenella
• #5216 2021-01-19: TPC Workflow: Move cluster / digit reading from tpc tracking spec into a helper by @davidrohr
• #5228 2021-01-19: o2-sim: Make configfile prefixed with correct name by @sawenzel
• #5234 2021-01-20: Abstract and track aggregated containers/indices + use in vertexers by @shahor02

Changes in Detectors

• #5153 2021-01-12: Avoid 2D params in SVertexer configurable params by @shahor02
• #5164 2021-01-13: Allow multiple test workflows with non-overlapping TF-ids by @shahor02
• #5178 2021-01-13: Fixes in entropy compression memory management by @shahor02
• #5175 2021-01-13: GPU: remove leftover debug messages by @davidrohr
• #5179 2021-01-13: Work towards getting the TPC Tracking QA run standalone from a tracks ROOT file by @davidrohr
• #5185 2021-01-14: Add TPC QC histograms for (limited) monitoring of cluster rejection on the fly while processing without MC information by @davidrohr
• #5180 2021-01-14: Do not encode TDC errors to compressed output stream by @preghenella
• #5181 2021-01-14: Standalone TPC Tracking QA (independent from o2-tpc-reco-workflow) by @davidrohr
• #5199 2021-01-15: (O2-1203) [CTF] use merging/splitting iterators during CTF ecoding/decoding for TPC by @MichaelLettrich
• #5192 2021-01-15: FT0 LUT prepared as Singleton for DigitBlockFT0 usage by @afurs
• #5187 2021-01-15: Fix: remap RootTreeWriter branches only once by @shahor02
• #5202 2021-01-16: [EMCAL-630] Store result of the raw fit as energy by @mfasDa
• #5186 2021-01-17: GPU: Add option to tpc-reco-workflow to ship shared cluster map created during tracking by @davidrohr
• #5208 2021-01-18: TPC-ITS matching will use tpc-reco-workflow or on-the-fly created shared cl.map by @shahor02
• #5198 2021-01-18: small improvement in fake track rejection by @pillot
• #5226 2021-01-19: Bugfix: WorkflowHelper.h was not installled by @davidrohr
• [#5216](https://github.com/AliceO2Gro...

v21.01

Changes since v20.49

Changes in Algorithm

• #5071 2020-12-16: DPL: initial support for plugin based algorithms by @ktf

Changes in Analysis

• #5042 2020-12-11: Change to new TPCrefit check: finders by @ddobrigk
• #5039 2020-12-11: Fixed bug for nested AnalysisCompositeCuts; removed duplicated histogram classes from TableReader by @iarsene
• #5063 2020-12-14: DPL Analysis: add string array Configurable by @aalkin
• #5050 2020-12-14: DPL Analysis: use compile-time hashed histogram names in registry by @mario-krueger
• #5060 2020-12-14: Fix finder -> problems with partitioning to be checked by @ddobrigk
• #5064 2020-12-14: Using histogram registry fill by @jgrosseo
• #5066 2020-12-15: Analysis: extend histogram registry example by @mario-krueger
• #5073 2020-12-16: DPL: allow decoupling from JAlien and retrieve JAlienFile, if available by @ktf
• #5071 2020-12-16: DPL: initial support for plugin based algorithms by @ktf
• #5081 2020-12-18: DPL: Use JAliEn::JAliEn rather than XRootD::Client to enable support by @ktf
• #5084 2020-12-19: Add X at minimum to v0data table by @ddobrigk
• #5074 2021-01-05: Initial version of EMCAL Correction Task by @raymondEhlers
• #5026 2021-01-05: Convert collision time to ps in TOF PID response by @njacazio

Changes in Common

• #5045 2020-12-11: [ALICE3] Rename PostLS4 and IT4 to ALICE3 and TRK by @mconcas
• #5043 2020-12-12: Make TrackPar(Cov) compatible to GPU by @davidrohr
• #5067 2020-12-15: Increase the margin of CTF block size to 10KB by @shahor02
• #5100 2020-12-28: GPU: Make more headers compatible to GPU by @davidrohr
• #5116 2021-01-05: Global (currently TPC only) refit on GPU using either GPU or TrackParCov track model by @davidrohr

Changes in DataFormats

• #5049 2020-12-11: Add DAQ SystemID Unloaded [O2-1918] by @shahor02
• #5041 2020-12-11: Use value_t instead of double by @davidrohr
• #5045 2020-12-11: [ALICE3] Rename PostLS4 and IT4 to ALICE3 and TRK by @mconcas
• #5043 2020-12-12: Make TrackPar(Cov) compatible to GPU by @davidrohr
• #5056 2020-12-13: Eliminate mass argument from track mat.corrections and propagation interfaces by @shahor02
• #5067 2020-12-15: Increase the margin of CTF block size to 10KB by @shahor02
• #5077 2020-12-17: Tmp.fix in TrackParCov c-tor from Cartesian cov.matrix by @shahor02
• #5089 2020-12-22: real LUT in CCDB by @AllaMaevskaya
• #5092 2020-12-23: ZDC Workflow to inspect raw data by @cortesep
• #5094 2020-12-24: GPU: Some work towards making the o2 propagator work on GPU by @davidrohr
• #5096 2020-12-25: Add possibility to use the GPUPolynomialField in the O2 propagator and make the O2 propagator compile on GPU by @davidrohr
• #5100 2020-12-28: GPU: Make more headers compatible to GPU by @davidrohr
• #5104 2021-01-04: Use DBSCAN for Time-Z clustering in PVertexing, debris reduction by @shahor02

Changes in Detectors

• #5054 2020-12-11: Add braces in oneliners of PHOS code by @shahor02
• #5045 2020-12-11: [ALICE3] Rename PostLS4 and IT4 to ALICE3 and TRK by @mconcas
• #5033 2020-12-11: [ITS] Remove unused classes by @mconcas
• #5055 2020-12-12: Change more Double_t to float in TrackParCov propagator by @davidrohr
• #5043 2020-12-12: Make TrackPar(Cov) compatible to GPU by @davidrohr
• #5056 2020-12-13: Eliminate mass argument from track mat.corrections and propagation interfaces by @shahor02
• #5058 2020-12-13: Reject outliers when building ITS/MFT clusters dictionary by @shahor02
• #5040 2020-12-14: Adding truncation + some minor changes by @nburmaso
• #5036 2020-12-14: First version of pedestal calibration workflow raw data -> ccdb by @wiechula
• #5059 2020-12-14: TPC drift gas settings in case FLUKA is used by @amorsch
• #5067 2020-12-15: Increase the margin of CTF block size to 10KB by @shahor02
• #5047 2020-12-16: TOF DCS Processor by @chiarazampolli
• #5057 2020-12-16: Update of water and air cooling by @frmanso
• #5078 2020-12-17: Parent TrackPar/Cov creator for DCAFitterN by @shahor02
• #5076 2020-12-17: [ITS][ntracker-workflow] Add --configKeyValue for MB LUT by @mconcas
• #5088 2020-12-19: MFT: fix lanes mapping for decoding commissionning data and for worki… by @bovulpes
• #5091 2020-12-22: MFT: eliminate sqrt where possible by @bovulpes
• #5089 2020-12-22: real LUT in CCDB by @AllaMaevskaya
• #5083 2020-12-23: Executable for chunk large raw-data files by @shahor02
• #5092 2020-12-23: ZDC Workflow to inspect raw data by @cortesep
• #5094 2020-12-24: GPU: Some work towards making the o2 propagator work on GPU by @davidrohr
• #5096 2020-12-25: Add possibility to use the GPUPolynomialField in the O2 propagator and make the O2 propagator compile on GPU by @davidrohr
• #5097 2020-12-25: TPC Tracking: Workaround for 0-cluster tracks by @davidrohr
• #5100 2020-12-28: GPU: Make more headers compatible to GPU by @davidrohr
• #5069 2020-12-28: [WIP][ITS-tracking] Add track dumping in standalone debugger by @mconcas
• #5102 2020-12-29: Drop bad assert by @ktf
• #5101 2020-12-29: [EMCAL-675] Handling of pages ...

v20.49

Support for FLUKA VMC backend in O2

This commit provides support for FLUKA in O2.
FLUKA compilation is optional for the moment.

This backend can be selected via:

```
o2-sim -e TFluka ...
```

v1.3.0

Update release.yml

v1.2.0

DPL: introduce exponential backoff when idle

This should reduce the amount of CPU used by data processors when they are idle
while retaining the ability to increase back the rate, should it be needed.

First stable release

fix unitialized variables in an EMCAL exception

Now giving proper error log when the exception occurs