quarto-publish.yml

name: Quarto Publish

on:
  workflow_dispatch:
  # push: # temporarily disable as we are using quarto publish gh-pages to update the website
  #  branches: main

jobs:
  build-deploy:
    runs-on: ubuntu-latest
    permissions:
      contents: write
    steps:
      - name: Check out repository
        uses: actions/checkout@v4

      - name: Install System Dependencies
        run: |
          sudo apt-get update
          sudo apt-get install -y libmagick++-dev libicu-dev

      - name: Set up Quarto
        uses: quarto-dev/quarto-actions/setup@v2
        with:
          tinytex: true
          version: pre-release

      - name: Install R
        uses: r-lib/actions/setup-r@v2
        with:
          r-version: '4.4.0'

      - name: Install R Dependencies
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
          packages: |
            any::rmarkdown
            any::knitr
            any::jsonlite
            any::yaml
            any::stringr
            any::dplyr
            any::ggplot2
            any::tidyr
            any::htmltools
            any::downlit
            any::xml2
            any::magrittr
            any::rstan
            any::R.matlab
            any::corrr
            any::loo
            any::patchwork

      - name: Render and Publish
        uses: quarto-dev/quarto-actions/publish@v2
        with:
          target: gh-pages
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}