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<!doctype html>
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<head>
<meta charset="utf-8">
<title>NASSA’s open library of archaeological ABM modules: overview and examples</title>
<meta name="description" content="Made with Reveal.JS, A framework for easily creating beautiful presentations using HTML, by Hakim El Hattab">
<meta name="author" content="Andreas Angourakis">
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<div class="reveal">
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<div class="slides">
<section data-state="title-page">
<h3>NASSA’s open library<br>of archaeological ABM modules</h3>
<h4>overview and examples</h4>
<div style="font-size: 50%">available at
<a href="https://andros-spica.github.io/CAA-DE-NL-FL-Angourakis-et-al-2022/" target="_blank">https://andros-spica.github.io/CAA-DE-NL-FL-Angourakis-et-al-2022/</a>
<br>
<a href="https://andros-spica.github.io/CAA-DE-NL-FL-Angourakis-et-al-2022/index.html?print-pdf" target="_blank">https://andros-spica.github.io/CAA-DE-NL-FL-Angourakis-et-al-2022/index.html?print-pdf</a> (printable version)</div>
<div id="left50">
<img src="images/NASSA-logo.png" alt="Logos"
style="width: 400px; border: none; box-shadow: none;"/>
</div>
<div id="right50" style="font-size: 50%;">
<br>
<br>
<table>
<tr>
<td style="text-align: right; border: none;">
<a href="https://reform.ressourcencampus-bochum.de/en/the-people-behind-reform/" target="_blank">Andreas <b>Angourakis</b></a>
</td>
<td style="text-align: left; border: none;">
<a href="https://twitter.com/AndrosSpica" target="_blank">@AndrosSpica</a>
</td>
</tr>
<tr>
<td style="text-align: right; border: none;">
<a href="https://www.driesdaems.com/" target="_blank">Dries <b>Daems</b></a>
</td>
<td style="text-align: left; border: none;">
<a href="https://twitter.com/DriesDaems" target="_blank">@DriesDaems</a>
</td>
</tr>
<tr>
<td style="text-align: right; border: none;">
<a href="https://research.vu.nl/en/persons/philip-verhagen" target="_blank">Philip <b>Verhagen</b></a>
</td>
<td style="text-align: left; border: none;">
<a href="https://twitter.com/jwhpverhagen" target="_blank">@jwhpverhagen</a>
</td>
</tr>
</table>
</div>
</section>
<section>
<h4>Network for Agent-based modelling of<br>Socio-ecological systems in Archaeology</h4>
<div id="left70">
<i style="color:darkcyan; font-size: 66%;">Scientific Research Network (WOG) - FWO, 2020-2025</i>
<br>
<lu style="font-size: 66%;">
NASSA missions:
<li>Create and maintain an open library of modular components for agent-based modelling (ABM) in archaeology</li>
<li>Improve reproducibility and re-usability in the field</li>
<li>Smooth communication with archaeologists (and beyond)</li>
<li>Facilitate learning processes of next generations</li>
</lu>
</div>
<div id="right30">
<img src="images/NASSA-logo_cropped.png" alt="Logos" style="width: 400px; border: none; box-shadow: none;"/>
</div>
</section>
<section>
Infraestructure
<ul style="font-size: 66%;">
<li>NASSA GitHub organization: <a href="https://github.com/Archaeology-ABM" target="_blank">https://github.com/Archaeology-ABM</a></li>
<li>NASSA overview: <a href="https://archaeology-abm.github.io/NASA" target="_blank">https://archaeology-abm.github.io/NASA</a></li>
<li>Library repository: <a href="https://github.com/Archaeology-ABM/NASSA-modules" target="_blank">https://github.com/Archaeology-ABM/NASSA-modules</a></li>
<li>Library Web interface: <a href="https://archaeology-abm.github.io/NASSA-modules" target="_blank">https://archaeology-abm.github.io/NASSA-modules</a></li>
<li>For registered members: mailing list, Google Drive, Slack</li>
</ul>
<br><br>
<div id="left50" style="text-align:center;">
Action fronts
<ul style="font-size: 66%;">
<li>Library infraestructure</li>
<li>Module submissions</li>
<li>Module curation</li>
<li>Promotion</li>
</ul>
</div>
<div id="right50" style="text-align:center;">
Contact<br>Dries Daems<br>to join us!
</div>
</section>
<section>
<h3>NASSA's Library | <i style="color:darkcyan">Concept</i></h3>
<div id="left50">
<ul style="font-size: 66%;">
<li>Collection of modules, not models</li>
<li>Enforcing common but flexible standards</li>
<li>Aimed at all levels of model developers</li>
<li>Primarily oriented to archaeology<br>(interdisciplinary, but usable by archaeologists)</li>
<li>Substantially different from other open science initiatives (e.g. CoMSES)</li>
</ul>
</div>
<div id="right50">
<img src="https://c.pxhere.com/photos/89/e6/lego_legoland_legostadt_building_blocks_legos_out_of_legos_children_toys-1119115.jpg!d" srcset="https://c.pxhere.com/photos/89/e6/lego_legoland_legostadt_building_blocks_legos_out_of_legos_children_toys-1119115.jpg!d" alt="play, toy, children, toys, lego, replica, figures, module, legoland, lego blocks, building blocks, legos, mini world, legomaennchen, legostadt, legotage, out of legos, Free Images In PxHere">
</div>
</section>
<section>
<h3>An open source ecosystem</h3>
<img src="images/NASSA-ecosystem.png" alt="NASSA ecosystem" style="width: 550px; border: none; box-shadow: none;"/>
</section>
<section>
<h3>Module submission | <i style="color:darkcyan">"Gist"</i></h3>
<ul>
<li>
Procedure still to be formalised, so for now there are only a few practical steps are required
</li>
<li>
Minimal knowledge of Git and GitHub is welcomed but not necessary
</li>
<li>
Submissions are reviewed by NASSA members to comply with NASSA schema and minimal standards (no gate-keeping!)
</li>
</ul>
</section>
<section>
<h3>Module submission | <i style="color:darkcyan">Code</i></h3>
Prepare the module code keeping in mind <strong>reproducibility</strong> and <strong>re-usability</strong>
<ul style="font-size: 80%;">
<li>Naming clarity</li>
<li>Single-responsibility principle</li>
<li>No magic numbers</li>
<li>Exposed inputs and outputs</li>
<li>Keep it basic (minimise dependencies)</li>
<li>Commentary in code</li>
</ul>
</section>
<section>
<h3>Module submission | <i style="color:darkcyan">Documentation</i></h3>
<div id="left50">
<i style="font-size: 90%;">Prepare documentation files</i>
<br>
<ul style="font-size: 80%;">
<li><i style="color:aquamarine">README.md</i>
<ul style="font-size: 80%;">
<li>Human readable free text presenting the module</li>
<li>Includes title, author, version, etc.</li>
<li>Hyperlinks to documentation and demonstration materials</li>
<li>Is used in the generation of a module webpage (HTML)</li>
</ul>
</li>
</ul>
</div>
<div id="right50">
<img src="images/2021-Romanowska-001_README.png" alt="README" style="width: 400px; border: none; box-shadow: none;"/>
</div>
</section>
<section>
<h3>Module submission | <i style="color:darkcyan">Documentation</i></h3>
<div id="left50">
<i style="font-size: 90%;">Prepare documentation files</i>
<br>
<ul style="font-size: 80%;">
<li>Variable lists, diagrams, pseudocode</li>
<li>Screenshots</li>
<li>Demonstrations, tutorials</li>
<li>Additional documents<br>(e.g., ODD, if applicable)</li>
</ul>
</div>
<div id="right50">
<img src="images/2021-Romanowska-001_docs.png" alt="docs tbc" style="width: 400px; border: none; box-shadow: none;"/>
</div>
</section>
<section>
<div id="left50" style="text-align: right;">
<h4>Module submission | <i style="color:darkcyan">file structure</i></h4>
<img src="images/schema-minimum.png" alt="schema-min" style="width: 400px; border: none; box-shadow: none;"/>
<br>
<a href="https://github.com/Archaeology-ABM/NASSA-schema" target="_blank" style="font-size: 50%;">https://github.com/Archaeology-ABM/NASSA-schema</a>
</div>
<div id="right50" style="text-align: center;">
<img src="images/schema-maximum.png" alt="schema-max" style="width: 220px; border: none; box-shadow: none;"/>
</div>
</section>
<section>
<div id="left70">
<h4>Module submission | <i style="color:darkcyan">NASSA.yml</i></h4>
<ul style="font-size: 80%;">
<li>
Defines the module as a library item (metadata) and is used for generating webpage
</li>
<li>
Human- and machine-readable (YAML)
</li>
<li>
Module ID and title
</li>
<li>
Module type: algorithm or submodel<br>(whether it contains modules or not)
</li>
<li>
Authorship additive and role-specific
</li>
<li>
References (BibTex) grouped as module references and use cases
</li>
</ul>
<a href="https://github.com/Archaeology-ABM/NASSA-schema" target="_blank" style="font-size: 50%;">https://github.com/Archaeology-ABM/NASSA-schema</a>
</div>
<div id="right30">
<img src="images/2021-Romanowska-001_yml_top.png" alt="NASSA.yml print" style="width: 400px; border: none; box-shadow: none;"/>
<img src="images/2022-Angourakis-001_yml_top.png" alt="NASSA.yml print" style="width: 400px; border: none; box-shadow: none;"/>
</div>
</section>
<section>
<div id="left60">
<h4>Module submission | <i style="color:darkcyan">NASSA.yml</i></h4>
<ul style="font-size: 80%;">
<li>
Versioning and progressive development
</li>
<li>
One-module, one-license
</li>
<li>
Semantic tags
<ul style="font-size: 80%;">
<li>programming</li>
<li>modelling</li>
<li>domain (subject, period, region)</li>
</ul>
</li>
<li>
Inputs and outputs
<ul style="font-size: 80%;">
<li>name</li>
<li>type</li>
<li>unit</li>
<li>description</li>
</ul>
</li>
</ul>
<a href="https://github.com/Archaeology-ABM/NASSA-schema" target="_blank" style="font-size: 50%;">https://github.com/Archaeology-ABM/NASSA-schema</a>
</div>
<div id="right40">
<img src="images/2021-Romanowska-001_yml_bottom.png" alt="NASSA.yml print" style="width: 400px; border: none; box-shadow: none;"/>
<img src="images/2022-Angourakis-001_yml_bottom.png" alt="NASSA.yml print" style="width: 300px; border: none; box-shadow: none;"/>
</div>
</section>
<section>
<h3>Module submission | <i style="color:darkcyan">Validation</i></h3>
<div id="left50">
<ul style="font-size: 80%;">
<li>Download <i style="color:aquamarine">nassa-hs</i> (<a href="https://github.com/Archaeology-ABM/nassa-hs" target="_blank">https://github.com/Archaeology-ABM/nassa-hs</a>)</li>
<li>Run it on the local module directory</li>
<li>Correct, if not passing validation</li>
</ul>
<br>
<p style="font-size: 80%; text-align: center;">See instructions at nassa-hs repository</p>
</div>
<div id="right50">
<img src="images/nassa-hs-validation.png" alt="nassa-hs print" style="width: 400px; border: none; box-shadow: none;"/>
<br>
<p style="font-size: 50%; text-align: center;">
Otherwise,<br>
another NASSA member/author<br>
may be available to perform the validation<br>
and submission in your behalf.
</p>
</div>
</section>
<section>
<h3>Module submission | <i style="color:darkcyan">Publication</i></h3>
<div id="left60">
There are currently two options to submit a module:
<ul style="font-size: 80%;">
<li>Directly,<br>via a <i style="color:aquamarine">GitHub "pull request"</i></li>
<li>Indirectly,<br>sending files to NASSA members<br>(attachment or download link)</li>
</ul>
</div>
<div id="right40">
<img src="https://media2.giphy.com/media/l2JdY3sVk1PPw911C/giphy.gif?cid=ecf05e472ik09wj9r3jng29zydm4wdvlc6uzh21wa0ll9hah&rid=giphy.gif&ct=g"
alt="submit" style="width: 400px; border: none; box-shadow: none;"/>
</div>
</section>
<section>
<h3>Library <i style="color:darkcyan">Web interface</i></h3>
<img src="images/library-webpage.png" alt="library webpage" style="width: 800px; border: none; box-shadow: none;"/>
<br>
<a href="https://archaeology-abm.github.io/NASSA-modules" target="_blank">https://archaeology-abm.github.io/NASSA-modules</a>
</section>
<section>
<img src="images/NASSA-logo.png" alt="Logos" style="width: 600px; border: none; box-shadow: none;"/>
<br>
<i style="color:darkcyan; font-size: 66%;">Scientific Research Network (WOG) - FWO, 2020-2025</i>
<br>
<ul style="font-size: 66%;">
<li>NASSA GitHub organization: <a href="https://github.com/Archaeology-ABM" target="_blank">https://github.com/Archaeology-ABM</a></li>
<li>NASSA overview: <a href="https://archaeology-abm.github.io/NASA" target="_blank">https://archaeology-abm.github.io/NASA</a></li>
<li>Library repository: <a href="https://github.com/Archaeology-ABM/NASSA-modules" target="_blank">https://github.com/Archaeology-ABM/NASSA-modules</a></li>
<li>Library Web interface: <a href="https://archaeology-abm.github.io/NASSA-modules" target="_blank">https://archaeology-abm.github.io/NASSA-modules</a></li>
<li>For registered members: mailing list, Google Drive, Slack</li>
</ul>
</section>
<section>
<h3>Acknowledgements</h3>
<p style="font-size: 80%">
Thanks to all NASSA members,
<br>
especially to
<br>
<i style="color:aquamarine">Clemens Schmid</i> (Max Plank Institute for Geoanthropology)
<br>
who has made most presented here possible!
</p>
</section>
</div>
</div>
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<div id="background-header">
<div style="text-align:left; position:absolute; top:3%; left: 10%; font-size:100%; color:gray">
<i>CAA DE/NL/FL 2022<br>University of Cologne-Fritz Thyssen Stiftung</i>
</div>
<div style="text-align:left; position:absolute; top:3%; right: 10%; font-size:100%; color:gray">
<b>Angourakis et al.<br>5-7 October 2022</b>
</div>
<div style="text-align:right; position:absolute; top:9%; right: 10%; font-size:100%; color:gray">
<b><a style="color: darkcyan;" href="https://andros-spica.github.io/
CAA-DE-NL-FL-Angourakis-et-al-2022/">https://andros-spica.github.io/
CAA-DE-NL-FL-Angourakis-et-al-2022/</a></b>
</div>
</div>
</html>