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Analysis name in "DEanalyses" section must be quoted #99

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rekado opened this issue Aug 11, 2021 · 1 comment
Open

Analysis name in "DEanalyses" section must be quoted #99

rekado opened this issue Aug 11, 2021 · 1 comment
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sanity_check sanity checks for robust execution - abort early with meaningful messages

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@rekado
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rekado commented Aug 11, 2021

The DEanalyses section lets the user add named sections. While it is syntactically okay to use spaces or other non-alphanumeric characters in the settings file, this will break the matching snakemake rule as the log file name contains the unquoted and unescaped analysis name. The name is merely spliced into the command, so any space character will break the redirection command.

@borauyar
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#56

@borauyar borauyar added the sanity_check sanity checks for robust execution - abort early with meaningful messages label Mar 30, 2022
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sanity_check sanity checks for robust execution - abort early with meaningful messages
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