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nf-core-mag-1.0.0.yml
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nf-core-mag-1.0.0.yml
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name: nf-core-mag-1.0.0
channels:
- bioconda
- anaconda
- r
- conda-forge
- defaults
dependencies:
- augustus=3.3.2=pl526h985c5e9_2
- binutils_impl_linux-64=2.34=h53a641e_5
- binutils_linux-64=2.34=hc952b39_20
- biopython=1.74=py36h516909a_0
- blast=2.2.31=pl526he19e7b1_4
- boost=1.68.0=py36h8619c78_1001
- boost-cpp=1.68.0=h11c811c_1000
- bowtie2=2.3.5.1=py36he513fc3_0
- brotlipy=0.7.0=py36h8c4c3a4_1000
- busco=3.0.2=py_13
- bwidget=1.9.14=0
- bzip2=1.0.8=h516909a_2
- ca-certificates=2020.6.20=hecda079_0
- cairo=1.14.12=h8948797_3
- cat=4.6=0
- centrifuge=1.0.4_beta=py36pl526he941832_2
- certifi=2020.6.20=py36h9f0ad1d_0
- cffi=1.14.0=py36hd463f26_0
- chardet=3.0.4=py36h9f0ad1d_1006
- circos=0.69.8=0
- click=7.1.2=pyh9f0ad1d_0
- colormath=3.0.0=py_2
- cryptography=2.9.2=py36h45558ae_0
- curl=7.71.1=he644dc0_0
- cycler=0.10.0=py_2
- dbus=1.13.6=he372182_0
- decorator=4.4.2=py_0
- diamond=0.9.24=ha888412_1
- entrez-direct=13.3=pl526h375a9b1_0
- expat=2.2.9=he1b5a44_2
- fastp=0.20.0=hdbcaa40_0
- fastqc=0.11.8=2
- filtlong=0.2.0=he941832_2
- findutils=4.6.0=h14c3975_1000
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- fontconfig=2.13.0=h9420a91_0
- freetype=2.10.2=he06d7ca_0
- fribidi=1.0.9=h516909a_0
- future=0.18.2=py36h9f0ad1d_1
- glimmerhmm=3.0.4=pl526hf484d3e_3
- graphite2=1.3.13=he1b5a44_1001
- gsl=2.4=h294904e_1006
- gst-plugins-base=1.14.5=h0935bb2_2
- gstreamer=1.14.5=h36ae1b5_2
- harfbuzz=2.4.0=hca77d97_0
- hmmer=3.3=he1b5a44_1
- htslib=1.9=h4da6232_3
- icu=58.2=hf484d3e_1000
- idna=2.10=pyh9f0ad1d_0
- importlib-metadata=1.7.0=py36h9f0ad1d_0
- jinja2=2.11.2=pyh9f0ad1d_0
- joblib=0.16.0=py_0
- joypy=0.2.2=py_1
- jpeg=9d=h516909a_0
- kiwisolver=1.2.0=py36hdb11119_0
- kraken2=2.0.8_beta=pl526hc9558a2_2
- krb5=1.17.1=hfafb76e_1
- krona=2.7.1=pl526_3
- make=4.3=h516909a_0
- mappy=2.17=py36hde715ba_1
- markdown=3.2.2=py_0
- markupsafe=1.1.1=py36h8c4c3a4_1
- matplotlib=3.1.1=py36_0
- matplotlib-base=3.1.1=py36hfd891ef_0
- megahit=1.2.7=h8b12597_0
- metabat2=2.13=h03e5855_1
- metis=5.1.0=he1b5a44_1005
- multiqc=1.7=py_4
- nanoget=1.13.2=py_0
- nanolyse=1.1.0=py_2
- nanomath=0.23.3=py_0
- nanoplot=1.26.3=py_0
- nanoplotter=1.10.0=py_1
- ncurses=6.1=hf484d3e_1002
- networkx=2.4=py_1
- numpy=1.18.5=py36h7314795_0
- openblas=0.3.3=h9ac9557_1001
- openjdk=11.0.1=h516909a_1016
- openmp=8.0.1=0
- openssl=1.1.1g=h516909a_0
- pandas=1.0.5=py36h830a2c2_0
- pango=1.45.3=hd140c19_0
- patsy=0.5.1=py_0
- pauvre=0.1.86=py_1
- pcre=8.44=he1b5a44_0
- perl=5.26.2=h516909a_1006
- perl-apache-test=1.40=pl526_1
- perl-app-cpanminus=1.7044=pl526_1
- perl-archive-tar=2.32=pl526_0
- perl-autoloader=5.74=pl526_2
- perl-base=2.23=pl526_1
- perl-business-isbn=3.004=pl526_0
- perl-business-isbn-data=20140910.003=pl526_0
- perl-carp=1.38=pl526_3
- perl-class-load=0.25=pl526_0
- perl-class-load-xs=0.10=pl526h6bb024c_2
- perl-class-method-modifiers=2.12=pl526_0
- perl-clone=0.42=pl526h516909a_0
- perl-common-sense=3.74=pl526_2
- perl-compress-raw-bzip2=2.087=pl526he1b5a44_0
- perl-compress-raw-zlib=2.087=pl526hc9558a2_0
- perl-config-general=2.63=pl526_0
- perl-constant=1.33=pl526_1
- perl-cpan-meta=2.150010=pl526_0
- perl-cpan-meta-requirements=2.140=pl526_0
- perl-cpan-meta-yaml=0.018=pl526_0
- perl-data-dumper=2.173=pl526_0
- perl-data-optlist=0.110=pl526_2
- perl-dbi=1.642=pl526_0
- perl-devel-globaldestruction=0.14=pl526_0
- perl-devel-overloadinfo=0.005=pl526_0
- perl-devel-stacktrace=2.04=pl526_0
- perl-digest-hmac=1.03=pl526_3
- perl-digest-md5=2.55=pl526_0
- perl-digest-perl-md5=1.9=pl526_1
- perl-dist-checkconflicts=0.11=pl526_2
- perl-dynaloader=1.25=pl526_1
- perl-encode=2.88=pl526_1
- perl-encode-locale=1.05=pl526_6
- perl-eval-closure=0.14=pl526h6bb024c_4
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-cbuilder=0.280230=pl526_1
- perl-extutils-makemaker=7.36=pl526_1
- perl-extutils-manifest=1.72=pl526_0
- perl-extutils-parsexs=3.35=pl526_0
- perl-file-listing=6.04=pl526_1
- perl-file-path=2.16=pl526_0
- perl-file-temp=0.2304=pl526_2
- perl-file-which=1.23=pl526_0
- perl-font-ttf=1.06=pl526_0
- perl-gd=2.71=pl526he860b03_0
- perl-getopt-long=2.50=pl526_1
- perl-html-parser=3.72=pl526h6bb024c_5
- perl-html-tagset=3.20=pl526_3
- perl-html-tree=5.07=pl526_1
- perl-http-cookies=6.04=pl526_0
- perl-http-daemon=6.01=pl526_1
- perl-http-date=6.02=pl526_3
- perl-http-message=6.18=pl526_0
- perl-http-negotiate=6.01=pl526_3
- perl-io-compress=2.087=pl526he1b5a44_0
- perl-io-html=1.001=pl526_2
- perl-io-socket-ssl=2.066=pl526_0
- perl-io-string=1.08=pl526_3
- perl-io-zlib=1.10=pl526_2
- perl-ipc-cmd=1.02=pl526_0
- perl-json=4.02=pl526_0
- perl-json-pp=4.04=pl526_0
- perl-json-xs=2.34=pl526h6bb024c_3
- perl-libwww-perl=6.39=pl526_0
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-locale-maketext-simple=0.21=pl526_2
- perl-lwp-mediatypes=6.04=pl526_0
- perl-lwp-protocol-https=6.07=pl526_4
- perl-math-bezier=0.01=pl526_1
- perl-math-round=0.07=pl526_1
- perl-math-vecstat=0.08=pl526_1
- perl-mime-base64=3.15=pl526_1
- perl-module-build=0.4224=pl526_3
- perl-module-corelist=5.20190524=pl526_0
- perl-module-implementation=0.09=pl526_2
- perl-module-load=0.32=pl526_1
- perl-module-load-conditional=0.68=pl526_2
- perl-module-metadata=1.000036=pl526_0
- perl-module-runtime=0.016=pl526_1
- perl-module-runtime-conflicts=0.003=pl526_0
- perl-moo=2.003004=pl526_0
- perl-moose=2.2011=pl526hf484d3e_1
- perl-mozilla-ca=20180117=pl526_1
- perl-mro-compat=0.13=pl526_0
- perl-net-http=6.19=pl526_0
- perl-net-ssleay=1.88=pl526h90d6eec_0
- perl-ntlm=1.09=pl526_4
- perl-number-format=1.75=pl526_3
- perl-package-deprecationmanager=0.17=pl526_0
- perl-package-stash=0.38=pl526hf484d3e_1
- perl-package-stash-xs=0.28=pl526hf484d3e_1
- perl-parallel-forkmanager=2.02=pl526_0
- perl-params-check=0.38=pl526_1
- perl-params-util=1.07=pl526h6bb024c_4
- perl-params-validate=1.29=pl526h14c3975_1
- perl-parent=0.236=pl526_1
- perl-pathtools=3.75=pl526h14c3975_1
- perl-perl-ostype=1.010=pl526_1
- perl-readonly=2.05=pl526_0
- perl-regexp-common=2017060201=pl526_0
- perl-role-tiny=2.000008=pl526_0
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-set-intspan=1.19=pl526_1
- perl-socket=2.027=pl526_1
- perl-statistics-basic=1.6611=pl526_2
- perl-storable=3.15=pl526h14c3975_0
- perl-sub-exporter=0.987=pl526_2
- perl-sub-exporter-progressive=0.001013=pl526_0
- perl-sub-identify=0.14=pl526h14c3975_0
- perl-sub-install=0.928=pl526_2
- perl-sub-name=0.21=pl526_1
- perl-sub-quote=2.006003=pl526_1
- perl-svg=2.84=pl526_0
- perl-test-requiresinternet=0.05=pl526_0
- perl-text-abbrev=1.02=pl526_0
- perl-text-format=0.59=pl526_2
- perl-text-parsewords=3.30=pl526_0
- perl-time-hires=1.9760=pl526h14c3975_1
- perl-time-local=1.28=pl526_1
- perl-try-tiny=0.30=pl526_1
- perl-types-serialiser=1.0=pl526_2
- perl-uri=1.76=pl526_0
- perl-version=0.9924=pl526_0
- perl-www-robotrules=6.02=pl526_3
- perl-xml-namespacesupport=1.12=pl526_0
- perl-xml-parser=2.44_01=pl526ha1d75be_1002
- perl-xml-sax=1.02=pl526_0
- perl-xml-sax-base=1.09=pl526_0
- perl-xml-sax-expat=0.51=pl526_3
- perl-xml-simple=2.25=pl526_1
- perl-xsloader=0.24=pl526_0
- perl-yaml=1.29=pl526_0
- pip=20.1.1=py_1
- pixman=0.38.0=h516909a_1003
- plotly=4.8.2=pyh9f0ad1d_0
- popt=1.16=h299ea2f_2002
- porechop=0.2.3_seqan2.1.1=py36h2d50403_3
- prodigal=2.6.3=h516909a_2
- pthread-stubs=0.4=h14c3975_1001
- pycparser=2.20=pyh9f0ad1d_2
- pyopenssl=19.1.0=py_1
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyqt=5.9.2=py36hcca6a23_4
- pysam=0.16.0.1=py36h71d3148_0
- pysocks=1.7.1=py36h9f0ad1d_1
- python=3.6.7=h357f687_1008_cpython
- python-dateutil=2.8.1=py_0
- python_abi=3.6=1_cp36m
- pytz=2020.1=pyh9f0ad1d_0
- pyyaml=5.3.1=py36h8c4c3a4_0
- qt=5.9.7=h5867ecd_1
- quast=5.0.2=py36pl526ha92aebf_0
- r=3.6=r36_1004
- r-assertthat=0.2.1=r36h6115d3f_2
- r-backports=1.1.8=r36hcdcec82_0
- r-base=3.6.1=haffb61f_2
- r-boot=1.3_25=r36h6115d3f_1
- r-class=7.3_17=r36hcdcec82_1
- r-cli=2.0.2=r36h6115d3f_1
- r-cluster=2.1.0=r36h9bbef5b_3
- r-codetools=0.2_16=r36h6115d3f_1002
- r-colorspace=1.4_1=r36hcdcec82_2
- r-crayon=1.3.4=r36h6115d3f_1003
- r-digest=0.6.25=r36h0357c0b_2
- r-ellipsis=0.3.1=r36hcdcec82_0
- r-fansi=0.4.1=r36hcdcec82_1
- r-farver=2.0.3=r36h0357c0b_1
- r-foreign=0.8_76=r36hcdcec82_1
- r-ggplot2=3.2.0=r36h6115d3f_1
- r-glue=1.4.1=r36hcdcec82_0
- r-gtable=0.3.0=r36h6115d3f_3
- r-kernsmooth=2.23_17=r36hfa343cc_1
- r-labeling=0.3=r36h6115d3f_1003
- r-lattice=0.20_41=r36hcdcec82_2
- r-lazyeval=0.2.2=r36hcdcec82_2
- r-lifecycle=0.2.0=r36h6115d3f_1
- r-magrittr=1.5=r36h6115d3f_1003
- r-markdown=1.0=r36hcdcec82_1
- r-mass=7.3_51.6=r36hcdcec82_2
- r-matrix=1.2_18=r36h7fa42b6_3
- r-mgcv=1.8_31=r36h7fa42b6_1
- r-mime=0.9=r36hcdcec82_1
- r-munsell=0.5.0=r36h6115d3f_1003
- r-nlme=3.1_148=r36h9bbef5b_0
- r-nnet=7.3_14=r36hcdcec82_1
- r-pillar=1.4.4=r36h6115d3f_0
- r-pkgconfig=2.0.3=r36h6115d3f_1
- r-plyr=1.8.6=r36h0357c0b_1
- r-r6=2.4.1=r36h6115d3f_1
- r-rcolorbrewer=1.1_2=r36h6115d3f_1003
- r-rcpp=1.0.4.6=r36h0357c0b_1
- r-recommended=3.6=r36_1004
- r-reshape2=1.4.4=r36h0357c0b_1
- r-rlang=0.4.6=r36hcdcec82_0
- r-rpart=4.1_15=r36hcdcec82_2
- r-scales=1.1.1=r36h6115d3f_0
- r-spatial=7.3_12=r36hcdcec82_1
- r-stringi=1.4.3=r36h0357c0b_2
- r-stringr=1.4.0=r36h6115d3f_2
- r-survival=3.2_3=r36hcdcec82_0
- r-tibble=3.0.1=r36hcdcec82_1
- r-utf8=1.1.4=r36hcdcec82_1003
- r-vctrs=0.3.1=r36hcdcec82_0
- r-viridislite=0.3.0=r36h6115d3f_1003
- r-withr=2.2.0=r36h6115d3f_1
- r-zeallot=0.1.0=r36h6115d3f_1002
- readline=8.0=hf8c457e_0
- requests=2.24.0=pyh9f0ad1d_0
- retrying=1.3.3=py_2
- rsync=3.1.3=hed695b0_1002
- samtools=1.9=h10a08f8_12
- scipy=1.5.0=py36h2d22cac_0
- seaborn=0.10.1=1
- seaborn-base=0.10.1=py_1
- setuptools=47.3.1=py36h9f0ad1d_0
- simplejson=3.17.0=py36h8c4c3a4_1
- sip=4.19.8=py36hf484d3e_1000
- six=1.15.0=pyh9f0ad1d_0
- spades=3.13.1=h2d02072_2
- spectra=0.0.11=py_1
- sqlite=3.32.3=hcee41ef_0
- statsmodels=0.11.1=py36h8c4c3a4_2
- suitesparse=5.7.2=h717dc36_0
- tar=1.32=hd4ba37b_0
- tbb=2020.1=hc9558a2_0
- tk=8.6.10=hed695b0_0
- tktable=2.10=h555a92e_3
- tornado=6.0.4=py36h8c4c3a4_1
- urllib3=1.25.9=py_0
- wget=1.20.1=h22169c7_0
- wheel=0.34.2=py_1
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xz=5.2.5=h516909a_0
- yaml=0.2.5=h516909a_0
- zipp=3.1.0=py_0
- zlib=1.2.11=h516909a_1006
- zstd=1.4.4=h6597ccf_3
prefix: /processing_Data/bioinformatics/pipelines/miniconda3/envs/nf-core-mag-1.0.0