-
Notifications
You must be signed in to change notification settings - Fork 0
/
virus_illumina_consensus.yml
146 lines (145 loc) · 4.08 KB
/
virus_illumina_consensus.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
name: virus_illumina_consensus
channels:
- bioconda
- anaconda
- r
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _r-mutex=1.0.0=anacondar_1
- asn1crypto=1.3.0=py38_0
- bcftools=1.9=h68d8f2e_9
- bedtools=2.29.2=hc088bd4_0
- binutils_impl_linux-64=2.33.1=he6710b0_7
- binutils_linux-64=2.33.1=h9595d00_15
- blas=2.11=openblas
- bowtie2=2.4.1=py38he513fc3_0
- bwidget=1.9.11=1
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2019.11.28=hecc5488_0
- cairo=1.16.0=hcf35c78_1003
- certifi=2019.11.28=py38h32f6830_1
- cffi=1.14.0=py38h2e261b9_0
- chardet=3.0.4=py38_1003
- click=7.1.1=py_0
- coloredlogs=10.0=py38_0
- colormath=3.0.0=py_2
- cryptography=2.8=py38h1ba5d50_0
- curl=7.67.0=hbc83047_0
- cycler=0.10.0=py38_0
- decorator=4.4.2=py_0
- fastqc=0.11.9=0
- font-ttf-dejavu-sans-mono=2.37=h6964260_0
- fontconfig=2.13.1=h86ecdb6_1001
- freetype=2.9.1=h8a8886c_1
- fribidi=1.0.5=h7b6447c_0
- future=0.18.2=py38_0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_15
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_15
- glib=2.63.1=h5a9c865_0
- graphite2=1.3.13=h23475e2_0
- gsl=2.5=h294904e_1
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_15
- harfbuzz=2.4.0=h9f30f68_3
- htslib=1.9=h4da6232_3
- humanfriendly=6.1=py38_0
- icu=64.2=he1b5a44_1
- idna=2.9=py_1
- ivar=1.1_beta=h3ae53b1_0
- jinja2=2.11.1=py_0
- jpeg=9c=h14c3975_1001
- kiwisolver=1.0.1=py38he6710b0_0
- krb5=1.16.4=h173b8e3_0
- ld_impl_linux-64=2.33.1=h53a641e_7
- libblas=3.8.0=11_openblas
- libcblas=3.8.0=11_openblas
- libcurl=7.67.0=h20c2e04_0
- libdeflate=1.5=h516909a_0
- libedit=3.1.20181209=hc058e9b_0
- libffi=3.2.1=hd88cf55_4
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libiconv=1.15=h516909a_1006
- liblapack=3.8.0=11_openblas
- liblapacke=3.8.0=11_openblas
- libopenblas=0.3.6=h5a2b251_2
- libpng=1.6.37=hbc83047_0
- libssh2=1.8.2=h1ba5d50_0
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.1.0=h2733197_0
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h1bed415_1
- libxml2=2.9.9=hea5a465_1
- lzstring=1.0.4=py_1001
- make=4.2.1=h1bed415_1
- markdown=3.1.1=py38_0
- markupsafe=1.1.1=py38h7b6447c_0
- matplotlib-base=3.1.1=py38h250f245_2
- multiqc=1.8=py_2
- ncurses=6.1=he6710b0_1
- networkx=2.2=py_1
- openjdk=8.0.152=h7b6447c_3
- openssl=1.1.1e=h516909a_0
- pango=1.42.4=ha030887_1
- pcre=8.43=he6710b0_0
- perl=5.26.2=h14c3975_0
- picard=2.22.1=0
- pip=20.0.2=py38_1
- pixman=0.38.0=h7b6447c_0
- pycparser=2.20=py_0
- pyopenssl=19.1.0=py38_0
- pyparsing=2.4.6=py_0
- pysocks=1.7.1=py38_0
- python=3.8.2=h8356626_5_cpython
- python-dateutil=2.8.1=py_0
- python_abi=3.8=1_cp38
- pyyaml=5.3.1=py38h7b6447c_0
- r-base=3.6.1=hba50c9b_5
- r-markdown=1.1=r36hcdcec82_0
- r-mime=0.6=r36h96ca727_0
- r-xfun=0.6=r36h6115d3f_0
- readline=8.0=h7b6447c_0
- requests=2.23.0=py38_0
- samtools=1.9=h10a08f8_12
- sed=4.7=h1bed415_1000
- setuptools=46.1.1=py38_0
- simplejson=3.17.0=py38h7b6447c_0
- six=1.14.0=py38_0
- snpeff=4.3.1t=3
- snpsift=4.3.1t=1
- spectra=0.0.11=py_1
- sqlite=3.31.1=h7b6447c_0
- tbb=2020.0=hfd86e86_0
- tk=8.6.10=hed695b0_0
- tktable=2.10=h14c3975_0
- tornado=6.0.4=py38h7b6447c_1
- trimmomatic=0.39=1
- urllib3=1.25.8=py38_0
- varscan=2.4.4=0
- wheel=0.34.2=py38_0
- wkhtmltopdf=0.12.4=1
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.9=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_4
- yaml=0.1.7=had09818_2
- zlib=1.2.11=h7b6447c_3
- zstd=1.3.7=h0b5b093_0
- pip:
- joblib==0.14.1
- numpy==1.18.2
- pandas==1.0.3
- pytz==2019.3
- scikit-learn==0.22.2.post1
- scipy==1.4.1
prefix: /processing_Data/bioinformatics/pipelines/miniconda3/envs/virus_illumina_consensus