From 254c480c765e8da59a8e6333bda44d68158b203b Mon Sep 17 00:00:00 2001 From: victor5lm Date: Tue, 29 Oct 2024 09:44:34 +0100 Subject: [PATCH] Removed conda env line from viralrecon's results lablog --- bu_isciii/templates/viralrecon/RESULTS/lablog_viralrecon_results | 1 - 1 file changed, 1 deletion(-) diff --git a/bu_isciii/templates/viralrecon/RESULTS/lablog_viralrecon_results b/bu_isciii/templates/viralrecon/RESULTS/lablog_viralrecon_results index d05b2ab7..31bbdfd1 100755 --- a/bu_isciii/templates/viralrecon/RESULTS/lablog_viralrecon_results +++ b/bu_isciii/templates/viralrecon/RESULTS/lablog_viralrecon_results @@ -25,7 +25,6 @@ ln -s ../../ANALYSIS/*/mapping_illumina*.tab ./mapping_illumina.csv ln -s ../../ANALYSIS/*/assembly_stats.csv ./assembly_stats.csv ln -s ../../ANALYSIS/*/01-PikaVirus-results/all_samples_virus_table_filtered.tsv ./pikavirus_table.tsv -#conda activate viralrecon_report echo "python ./excel_generator.py -r ./references.tmp --merge_lineage_files" > _01_generate_excel_files.sh #Cleaning temp files and broken symbolic links echo "find . -xtype l -delete" > _02_clean_folders.sh