From c48de7392c010c0a1f835dfaeb392220757b33b7 Mon Sep 17 00:00:00 2001 From: Milad Miladi Date: Sun, 22 Jan 2017 14:53:43 +0100 Subject: [PATCH] Reimport workflows --- workflows/GraphClust_one.ga | 95 +++++++++++++----------- workflows/GraphClust_two.ga | 144 ++++++++++++++++++++---------------- 2 files changed, 133 insertions(+), 106 deletions(-) diff --git a/workflows/GraphClust_one.ga b/workflows/GraphClust_one.ga index 6f686c1..c73ae5e 100644 --- a/workflows/GraphClust_one.ga +++ b/workflows/GraphClust_one.ga @@ -2,7 +2,7 @@ "a_galaxy_workflow": "true", "annotation": "", "format-version": "0.1", - "name": "GraphClust-1-round", + "name": "GraphClust-1-round (imported from API)", "steps": { "0": { "annotation": "", @@ -19,8 +19,8 @@ "name": "Input dataset", "outputs": [], "position": { - "left": 200, - "top": 200 + "left": 199.96875, + "top": 204 }, "tool_errors": null, "tool_id": null, @@ -77,8 +77,8 @@ } ], "position": { - "left": 191.984375, - "top": 290.984375 + "left": 438.890625, + "top": 329.90625 }, "post_job_actions": { "HideDatasetActionFASTA": { @@ -110,7 +110,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_preprocessing/preproc/0.1", "tool_shed_repository": { - "changeset_revision": "3eb088816194", + "changeset_revision": "cf2673f7eb44", "name": "graphclust_preprocessing", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -146,8 +146,8 @@ } ], "position": { - "left": 389.96875, - "top": 155 + "left": 676.921875, + "top": 199.96875 }, "post_job_actions": { "HideDatasetActiongspan.zip": { @@ -159,7 +159,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_fasta_to_gspan/gspan/0.1", "tool_shed_repository": { - "changeset_revision": "b6e6830ff06b", + "changeset_revision": "358c52752305", "name": "graphclust_fasta_to_gspan", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -203,8 +203,8 @@ } ], "position": { - "left": 407.984375, - "top": 262.984375 + "left": 932.90625, + "top": 223.921875 }, "post_job_actions": { "HideDatasetActiondata_svector": { @@ -216,7 +216,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/nspdk_sparse/9.2", "tool_shed_repository": { - "changeset_revision": "165fe96228be", + "changeset_revision": "90a4a2e7d876", "name": "graphclust_nspdk", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -288,8 +288,8 @@ } ], "position": { - "left": 420.984375, - "top": 440.984375 + "left": 1149.890625, + "top": 279.9375 }, "post_job_actions": { "HideDatasetActionblack_list": { @@ -326,7 +326,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2", "tool_shed_repository": { - "changeset_revision": "165fe96228be", + "changeset_revision": "90a4a2e7d876", "name": "graphclust_nspdk", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -402,8 +402,8 @@ } ], "position": { - "left": 660.984375, - "top": 338.984375 + "left": 1512.890625, + "top": 390.9375 }, "post_job_actions": { "HideDatasetActioncenters": { @@ -435,7 +435,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_prepocessing_for_mlocarna/preMloc/0.1.0", "tool_shed_repository": { - "changeset_revision": "8ad3e79255c1", + "changeset_revision": "8d3222b4b96b", "name": "graphclust_prepocessing_for_mlocarna", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -495,8 +495,8 @@ } ], "position": { - "left": 847.46875, - "top": 405.984375 + "left": 1788.375, + "top": 507.9375 }, "post_job_actions": { "HideDatasetActionmodel_tree_stk": { @@ -508,12 +508,12 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_mlocarna/locarna_best_subtree/0.1.0", "tool_shed_repository": { - "changeset_revision": "15bd4fb05e5c", + "changeset_revision": "c6c4a7adb099", "name": "graphclust_mlocarna", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"tau\": \"\\\"50\\\"\", \"max_diff_am\": \"\\\"50\\\"\", \"center_fa_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"tree_matrix\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"p\": \"\\\"0.001\\\"\", \"data_map\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"max_diff\": \"\\\"100\\\"\", \"tree_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"plfold_minlen\": \"\\\"210\\\"\"}", + "tool_state": "{\"tau\": \"\\\"50\\\"\", \"max_diff_am\": \"\\\"50\\\"\", \"center_fa_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"tree_matrix\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"p\": \"\\\"0.001\\\"\", \"data_map\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"param_type\": \"{\\\"tau\\\": \\\"50\\\", \\\"max_diff_am\\\": \\\"50\\\", \\\"struct_weight\\\": \\\"180\\\", \\\"p\\\": \\\"0.001\\\", \\\"plfold_winsize\\\": \\\"300\\\", \\\"alifold_consensus_dp\\\": \\\"true\\\", \\\"param_type_selector\\\": \\\"gclust\\\", \\\"indel\\\": \\\"-200\\\", \\\"__current_case__\\\": 0, \\\"max_diff\\\": \\\"100\\\", \\\"indel_opening\\\": \\\"-400\\\", \\\"plfold_minlen\\\": \\\"210\\\", \\\"plfold_span\\\": \\\"150\\\"}\", \"max_diff\": \"\\\"100\\\"\", \"tree_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"plfold_minlen\": \"\\\"210\\\"\"}", "tool_version": "0.1.0", "type": "tool", "uuid": "8febdf67-f1ae-42c0-89e4-baabaf4e2e1b", @@ -552,8 +552,8 @@ } ], "position": { - "left": 837.984375, - "top": 642.984375 + "left": 2048.90625, + "top": 855.9375 }, "post_job_actions": { "HideDatasetActionmodel_cmfinder_stk": { @@ -565,7 +565,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_cmfinder/cmFinder/0.1.0", "tool_shed_repository": { - "changeset_revision": "78772eedd780", + "changeset_revision": "a4b009876214", "name": "graphclust_cmfinder", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -609,8 +609,8 @@ } ], "position": { - "left": 1100, - "top": 655.984375 + "left": 2360.953125, + "top": 927.9375 }, "post_job_actions": { "HideDatasetActioncmfile_outfile": { @@ -680,8 +680,8 @@ } ], "position": { - "left": 833.484375, - "top": 822.984375 + "left": 2732.390625, + "top": 952.921875 }, "post_job_actions": { "HideDatasetActionmultiple_alignment_output": { @@ -783,11 +783,15 @@ { "name": "evaluation", "type": "txt" + }, + { + "name": "RESULTS_zip", + "type": "zip" } ], "position": { - "left": 1172.984375, - "top": 937.984375 + "left": 3097.890625, + "top": 999.921875 }, "post_job_actions": { "HideDatasetActionfinal_soft": { @@ -814,30 +818,30 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_postprocessing/glob_report/0.1", "tool_shed_repository": { - "changeset_revision": "4a9754d476fe", + "changeset_revision": "4310ac018d05", "name": "graphclust_postprocessing", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"__page__\": 0, \"model_tree_files\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"cm_max_eval\": \"\\\"0.001\\\"\", \"min_cluster_size\": \"\\\"3\\\"\", \"__rerun_remap_job_id__\": null, \"merge_cluster_ol\": \"\\\"0.66\\\"\", \"iteration_num\": \"{\\\"iteration_num_selector\\\": \\\"false\\\", \\\"__current_case__\\\": 1}\", \"cm_min_bitscore\": \"\\\"20\\\"\", \"cmsearch_results\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"results_top_num\": \"\\\"5\\\"\", \"merge_overlap\": \"\\\"0.51\\\"\", \"cm_bitscore_sig\": \"\\\"1\\\"\", \"FASTA\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"cut_type\": \"\\\"true\\\"\", \"cdhit\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"partition_type\": \"\\\"true\\\"\"}", + "tool_state": "{\"__page__\": 0, \"model_tree_files\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"cm_max_eval\": \"\\\"0.001\\\"\", \"min_cluster_size\": \"\\\"3\\\"\", \"advanced_opts\": \"{\\\"__current_case__\\\": 0, \\\"advanced_opts_selector\\\": \\\"hide\\\"}\", \"merge_cluster_ol\": \"\\\"0.66\\\"\", \"iteration_num\": \"{\\\"iteration_num_selector\\\": \\\"false\\\", \\\"__current_case__\\\": 1}\", \"cm_min_bitscore\": \"\\\"20\\\"\", \"cmsearch_results\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"results_top_num\": \"\\\"5\\\"\", \"merge_overlap\": \"\\\"0.51\\\"\", \"cm_bitscore_sig\": \"\\\"1\\\"\", \"__rerun_remap_job_id__\": null, \"FASTA\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"cut_type\": \"\\\"true\\\"\", \"cdhit\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"partition_type\": \"\\\"true\\\"\"}", "tool_version": "0.1", "type": "tool", "uuid": "2cf68268-36ab-4b5c-a0be-5bbe149970f4", "workflow_outputs": [ { "label": null, - "output_name": "topSecondaryStruct", - "uuid": "e73c4935-1b80-4c65-aa9a-43e8a8159d23" + "output_name": "topDot", + "uuid": "14959ce4-9e2c-4174-8952-ed1dc12bd395" }, { "label": null, - "output_name": "evaluation", - "uuid": "51dc83c0-5c56-48e8-91ee-e4b3fac56602" + "output_name": "final_stats", + "uuid": "38bc3ed1-1dba-4665-b2bc-88698f5875aa" }, { "label": null, - "output_name": "topDot", - "uuid": "14959ce4-9e2c-4174-8952-ed1dc12bd395" + "output_name": "topSecondaryStruct", + "uuid": "e73c4935-1b80-4c65-aa9a-43e8a8159d23" }, { "label": null, @@ -846,11 +850,16 @@ }, { "label": null, - "output_name": "final_stats", - "uuid": "38bc3ed1-1dba-4665-b2bc-88698f5875aa" + "output_name": "evaluation", + "uuid": "51dc83c0-5c56-48e8-91ee-e4b3fac56602" + }, + { + "label": null, + "output_name": "RESULTS_zip", + "uuid": "9d09a53f-abb6-42e5-af3e-169cd92d922a" } ] } }, - "uuid": "afdc2ffd-c454-42bb-9e5c-0295e558cfd4" -} + "uuid": "4c871c34-4d82-40b0-ab6c-e22cdf62330c" +} \ No newline at end of file diff --git a/workflows/GraphClust_two.ga b/workflows/GraphClust_two.ga index 06d6b72..5e111f9 100644 --- a/workflows/GraphClust_two.ga +++ b/workflows/GraphClust_two.ga @@ -2,7 +2,7 @@ "a_galaxy_workflow": "true", "annotation": "", "format-version": "0.1", - "name": "GrapClust-2-rounds", + "name": "GrapClust-2-rounds (imported from API)", "steps": { "0": { "annotation": "", @@ -19,8 +19,8 @@ "name": "Input dataset", "outputs": [], "position": { - "left": 122.96875, - "top": 633.984375 + "left": 117.96875, + "top": 649.96875 }, "tool_errors": null, "tool_id": null, @@ -77,8 +77,8 @@ } ], "position": { - "left": 356.984375, - "top": 635.984375 + "left": 356.96875, + "top": 635.96875 }, "post_job_actions": { "HideDatasetActionFASTA": { @@ -110,7 +110,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_preprocessing/preproc/0.1", "tool_shed_repository": { - "changeset_revision": "3eb088816194", + "changeset_revision": "cf2673f7eb44", "name": "graphclust_preprocessing", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -146,8 +146,8 @@ } ], "position": { - "left": 527.984375, - "top": 197.984375 + "left": 527.96875, + "top": 197.96875 }, "post_job_actions": { "HideDatasetActiongspan.zip": { @@ -159,7 +159,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_fasta_to_gspan/gspan/0.1", "tool_shed_repository": { - "changeset_revision": "b6e6830ff06b", + "changeset_revision": "358c52752305", "name": "graphclust_fasta_to_gspan", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -203,8 +203,8 @@ } ], "position": { - "left": 540.984375, - "top": 302.984375 + "left": 540.96875, + "top": 302.96875 }, "post_job_actions": { "HideDatasetActiondata_svector": { @@ -216,7 +216,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/nspdk_sparse/9.2", "tool_shed_repository": { - "changeset_revision": "165fe96228be", + "changeset_revision": "90a4a2e7d876", "name": "graphclust_nspdk", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -288,8 +288,8 @@ } ], "position": { - "left": 572.984375, - "top": 430.984375 + "left": 572.96875, + "top": 430.96875 }, "post_job_actions": { "HideDatasetActionblack_list": { @@ -326,7 +326,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2", "tool_shed_repository": { - "changeset_revision": "165fe96228be", + "changeset_revision": "90a4a2e7d876", "name": "graphclust_nspdk", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -402,8 +402,8 @@ } ], "position": { - "left": 809.96875, - "top": 410.984375 + "left": 809.953125, + "top": 410.96875 }, "post_job_actions": { "HideDatasetActioncenters": { @@ -435,7 +435,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_prepocessing_for_mlocarna/preMloc/0.1.0", "tool_shed_repository": { - "changeset_revision": "8ad3e79255c1", + "changeset_revision": "8d3222b4b96b", "name": "graphclust_prepocessing_for_mlocarna", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -495,7 +495,7 @@ } ], "position": { - "left": 1017.46875, + "left": 1017.453125, "top": 390 }, "post_job_actions": { @@ -508,12 +508,12 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_mlocarna/locarna_best_subtree/0.1.0", "tool_shed_repository": { - "changeset_revision": "15bd4fb05e5c", + "changeset_revision": "c6c4a7adb099", "name": "graphclust_mlocarna", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"tau\": \"\\\"50\\\"\", \"max_diff_am\": \"\\\"50\\\"\", \"center_fa_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"tree_matrix\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"p\": \"\\\"0.001\\\"\", \"data_map\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"max_diff\": \"\\\"100\\\"\", \"tree_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"plfold_minlen\": \"\\\"210\\\"\"}", + "tool_state": "{\"tau\": \"\\\"50\\\"\", \"max_diff_am\": \"\\\"50\\\"\", \"center_fa_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"tree_matrix\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"p\": \"\\\"0.001\\\"\", \"data_map\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"param_type\": \"{\\\"tau\\\": \\\"50\\\", \\\"max_diff_am\\\": \\\"50\\\", \\\"struct_weight\\\": \\\"180\\\", \\\"p\\\": \\\"0.001\\\", \\\"plfold_winsize\\\": \\\"300\\\", \\\"alifold_consensus_dp\\\": \\\"true\\\", \\\"param_type_selector\\\": \\\"gclust\\\", \\\"indel\\\": \\\"-200\\\", \\\"__current_case__\\\": 0, \\\"max_diff\\\": \\\"100\\\", \\\"indel_opening\\\": \\\"-400\\\", \\\"plfold_minlen\\\": \\\"210\\\", \\\"plfold_span\\\": \\\"150\\\"}\", \"max_diff\": \"\\\"100\\\"\", \"tree_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"plfold_minlen\": \"\\\"210\\\"\"}", "tool_version": "0.1.0", "type": "tool", "uuid": "8acfe63c-a4f5-4683-822a-64f115b37029", @@ -553,7 +553,7 @@ ], "position": { "left": 1048.984375, - 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"output_name": "topSecondaryStruct", - "uuid": "472fdd0c-0574-4106-91c1-e514c0228395" + "output_name": "topDot", + "uuid": "b8414c1d-3074-4cdf-978c-5efff9df2b8c" }, { "label": null, - "output_name": "evaluation", - "uuid": "18232c1e-9a61-4fdc-a238-be9fe50d700d" + "output_name": "final_stats", + "uuid": "ad4b0f75-59f0-4b82-a99c-2f4de1cb3d12" }, { "label": null, - "output_name": "topDot", - "uuid": "b8414c1d-3074-4cdf-978c-5efff9df2b8c" + "output_name": "topSecondaryStruct", + "uuid": "472fdd0c-0574-4106-91c1-e514c0228395" }, { "label": null, @@ -846,8 +850,13 @@ }, { "label": null, - "output_name": "final_stats", - "uuid": "ad4b0f75-59f0-4b82-a99c-2f4de1cb3d12" + "output_name": "evaluation", + "uuid": "18232c1e-9a61-4fdc-a238-be9fe50d700d" + }, + { + "label": null, + "output_name": "RESULTS_zip", + "uuid": "037a66c6-18bf-4063-9207-bf51935a54b8" } ] }, @@ -937,7 +946,7 @@ ], "position": { "left": 498.984375, - "top": 855.984375 + "top": 855.96875 }, "post_job_actions": { "HideDatasetActionblack_list": { @@ -974,7 +983,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2", "tool_shed_repository": { - "changeset_revision": "165fe96228be", + "changeset_revision": "90a4a2e7d876", "name": "graphclust_nspdk", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -1050,8 +1059,8 @@ } ], "position": { - "left": 842.984375, - "top": 1000.984375 + "left": 842.96875, + "top": 1000.96875 }, "post_job_actions": { "HideDatasetActioncenters": { @@ -1083,7 +1092,7 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_prepocessing_for_mlocarna/preMloc/0.1.0", "tool_shed_repository": { - "changeset_revision": "8ad3e79255c1", + "changeset_revision": "8d3222b4b96b", "name": "graphclust_prepocessing_for_mlocarna", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -1143,7 +1152,7 @@ } ], "position": { - "left": 1075.484375, + "left": 1075.46875, "top": 1085 }, "post_job_actions": { @@ -1156,12 +1165,12 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_mlocarna/locarna_best_subtree/0.1.0", "tool_shed_repository": { - "changeset_revision": "15bd4fb05e5c", + "changeset_revision": "c6c4a7adb099", "name": "graphclust_mlocarna", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" }, - 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"changeset_revision": "78772eedd780", + "changeset_revision": "a4b009876214", "name": "graphclust_cmfinder", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -1257,8 +1266,8 @@ } ], "position": { - "left": 1595.984375, - "top": 1185.984375 + "left": 1595.96875, + "top": 1185.96875 }, "post_job_actions": { "HideDatasetActioncmfile_outfile": { @@ -1329,7 +1338,7 @@ ], "position": { "left": 1906.484375, - "top": 1312.984375 + "top": 1312.96875 }, "post_job_actions": { "HideDatasetActionmultiple_alignment_output": { @@ -1453,11 +1462,15 @@ { "name": "evaluation", "type": "txt" + }, + { + "name": "RESULTS_zip", + "type": "zip" } ], "position": { - "left": 2316.3125, - "top": 1155.8125 + "left": 2316.296875, + "top": 1155.796875 }, "post_job_actions": { "HideDatasetActionfinal_soft": { @@ -1484,30 +1497,30 @@ "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_postprocessing/glob_report/0.1", "tool_shed_repository": { - "changeset_revision": "4a9754d476fe", + "changeset_revision": "4310ac018d05", "name": "graphclust_postprocessing", "owner": "rnateam", "tool_shed": "toolshed.g2.bx.psu.edu" }, - 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