From 7bca6d5bb272cfd36c990fd85b1fa81a968eb822 Mon Sep 17 00:00:00 2001 From: "zhenglei.gao" Date: Tue, 25 Feb 2025 11:10:17 +0000 Subject: [PATCH] added Hmisc dependency --- .github/workflows/pkgdown.yaml | 2 +- _pkgdown.yml | 2 +- vignettes/articles/Limit-Test.Rmd | 18 ++++++++++++++++++ 3 files changed, 20 insertions(+), 2 deletions(-) create mode 100644 vignettes/articles/Limit-Test.Rmd diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index 3da005c..f3389b2 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -33,7 +33,7 @@ jobs: - uses: r-lib/actions/setup-r-dependencies@v2 with: - extra-packages: any::pkgdown, any::tidyverse, any::drda, any::pander, any::metafor, any::kableExtra, any::plyr, any::ggprism, any::ggnewscale, any::GLMcat, any::quarto, local::. + extra-packages: any::pkgdown, any::tidyverse, any::drda, any::pander, any::metafor, any::kableExtra, any::plyr, any::ggprism, any::ggnewscale, any::GLMcat, any::quarto,any::Hmisc, local::. needs: website - name: Build site diff --git a/_pkgdown.yml b/_pkgdown.yml index 10ae511..a64e7a5 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -62,7 +62,7 @@ navbar: text: Reference href: reference/ tutorials: - text: Regulatory Concepts + text: Regulatory Insights menu: - text: NOEC Calculations href: articles/NOEC_Methods.html diff --git a/vignettes/articles/Limit-Test.Rmd b/vignettes/articles/Limit-Test.Rmd new file mode 100644 index 0000000..591524b --- /dev/null +++ b/vignettes/articles/Limit-Test.Rmd @@ -0,0 +1,18 @@ +--- +title: "Limit Test" +--- + +```{r, include = FALSE} +knitr::opts_chunk$set( + collapse = TRUE, + comment = "#>", + warning = FALSE, + message = FALSE +) +``` + +```{r setup} +library(drcHelper) +``` + +In some cases (e.g. when a test chemical is expected to be of low toxicity or when a test chemical is poorly soluble) a limit test may be performed, in order to demonstrate that the NOEDD is greater than or equal to the limit dose tested, and the LDD50 is greater than the limit dose tested, if no effects are observed in the study.