Provide a Dockerfile

[sulantha2006]

Would it be possible to provide a docker file in order to easily use this?
I have tried one with SamTools installed, but various dependency version requirements in the cmake file makes it really impossible.

My only success was with ubuntu jammy, but when I run vntrseek.pl --HELP I get, malloc_consolidate(): unaligned fastbin chunk detected. this may be due to incorrect versions being used in building.

Any help is appreciated. Here is the Dockerfile I used.

ARG SAMTOOLS_VER="1.18"
FROM ubuntu:jammy as builder

ARG SAMTOOLS_VER
ARG DEBIAN_FRONTEND=noninteractive

# install dependencies required for compiling samtools
RUN apt-get update && apt-get install --no-install-recommends -y \
    libncurses5-dev \
    libbz2-dev \
    liblzma-dev \
    libcurl4-gnutls-dev \
    zlib1g-dev \
    libssl-dev \
    gcc \
    wget \
    make \
    perl \
    bzip2 \
    gnuplot \
    ca-certificates

# download, compile, and install samtools
RUN wget https://github.com/samtools/samtools/releases/download/${SAMTOOLS_VER}/samtools-${SAMTOOLS_VER}.tar.bz2 && \
    tar -xjf samtools-${SAMTOOLS_VER}.tar.bz2 && \
    cd samtools-${SAMTOOLS_VER} && \
    ./configure && \
    make && \
    make install

### start of app stage ###
FROM ubuntu:jammy as app
ARG SAMTOOLS_VER
ARG DEBIAN_FRONTEND=noninteractive

RUN apt-get update && apt-get install --no-install-recommends -y \
libncurses5-dev \
    libbz2-dev \
    liblzma-dev \
    libcurl4-gnutls-dev \
    zlib1g-dev \
    libssl-dev \
    build-essential \
    g++ \
    gcc \
    glibc-source \
    clang \
    wget \
    make \
    cmake \
    perl \
    zlib1g \
    libncurses5 \
    bzip2 \
    liblzma-dev \
    libcurl4-gnutls-dev \
    gnuplot \
    sqlite3 \
    libsqlite3-dev \
    libdbi-perl \
    libdbd-sqlite3-perl libdatetime-perl libxml-simple-perl libdigest-md5-perl \
    ca-certificates git \
    && apt-get autoclean && rm -rf /var/lib/apt/lists/*

## needed by vntr make ##
RUN ln -s /lib/x86_64-linux-gnu/libc.so.6 /lib/libc.so.6

# copy in samtools executables from builder stage
COPY --from=builder /usr/local/bin/* /usr/local/bin/

ENV LC_ALL=C

RUN wget -O vntr.tar.gz https://github.com/Benson-Genomics-Lab/VNTRseek/archive/refs/tags/v2.0.3.tar.gz && tar -zxvf vntr.tar.gz && rm vntr.tar.gz && cd VNTRseek-2.0.3 && mkdir build && cd build && cmake -DCMAKE_C_COMPILER=clang .. && make install