diff --git a/argnorm/data/manual_curation/argannot_curation.tsv b/argnorm/data/manual_curation/argannot_curation.tsv index 471d034..2ccf34c 100644 --- a/argnorm/data/manual_curation/argannot_curation.tsv +++ b/argnorm/data/manual_curation/argannot_curation.tsv @@ -1,2 +1,2 @@ -Original ID ARO Gene Name in CARD -(Phe)cpt_strepv:U09991:AAB36569:1412-1948:537 +Original ID ARO Gene Name in CARD Description +(Phe)cpt_strepv:U09991:AAB36569:1412-1948:537 3000249 chloramphenicol phosphotransferase Parent ARO mapping diff --git a/argnorm/data/manual_curation/deeparg_curation.tsv b/argnorm/data/manual_curation/deeparg_curation.tsv index 6d8994c..693f9dd 100644 --- a/argnorm/data/manual_curation/deeparg_curation.tsv +++ b/argnorm/data/manual_curation/deeparg_curation.tsv @@ -1,13 +1,13 @@ -Original ID ARO Gene Name in CARD -CP000034.1.gene2198.p01|FEATURES|ompF|multidrug|ompF 3000265 porin OmpF -AAB08925|FEATURES|tetU|tetracycline|tetU 3004650 tet(U) -CP000647.1.gene2517.p01|FEATURES|ompF|multidrug|ompF 3000265 porin OmpF -gi:504720116:ref:WP_014907218.1:|FEATURES|ompF|multidrug|ompF 3000265 porin OmpF -AM180355.1.gene2260.p01|FEATURES|ermC|MLS|ermC 3000250 ErmC -gi:501976562:ref:WP_012681429.1:|FEATURES|cystathionine_beta-lyase_patB|unclassified|cystathionine_beta-lyase_patB 3000025 patB -gi:447201629:ref:WP_001278885.1:|FEATURES|cob(I)alamin_adenolsyltransferase|unclassified|cob(I)alamin_adenolsyltransferase -gi:489831097:ref:WP_003734834.1:|FEATURES|cystathionine_beta-lyase_patB|unclassified|cystathionine_beta-lyase_patB 3000025 patB -gi:685904080:ref:WP_031644138.1:|FEATURES|cystathionine_beta-lyase_patB|unclassified|cystathionine_beta-lyase_patB 3000025 patB -NP_253005.1|FEATURES|MvaT|multidrug|MvaT 3004069 MvaT -NP_417544.5|FEATURES|patA|fluoroquinolone|patA 3000024 patA -NP_416340.1|FEATURES|mgrB|multidrug|mgrB 3003820 mgrB +Original ID ARO Gene Name in CARD Description +CP000034.1.gene2198.p01|FEATURES|ompF|multidrug|ompF 3000265 porin OmpF +AAB08925|FEATURES|tetU|tetracycline|tetU 3004650 tet(U) +CP000647.1.gene2517.p01|FEATURES|ompF|multidrug|ompF 3000265 porin OmpF +gi:504720116:ref:WP_014907218.1:|FEATURES|ompF|multidrug|ompF 3000265 porin OmpF +AM180355.1.gene2260.p01|FEATURES|ermC|MLS|ermC 3000250 ErmC +gi:501976562:ref:WP_012681429.1:|FEATURES|cystathionine_beta-lyase_patB|unclassified|cystathionine_beta-lyase_patB 3000025 patB +gi:447201629:ref:WP_001278885.1:|FEATURES|cob(I)alamin_adenolsyltransferase|unclassified|cob(I)alamin_adenolsyltransferase 0010004 RND type drug efflux https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2696896/ +gi:489831097:ref:WP_003734834.1:|FEATURES|cystathionine_beta-lyase_patB|unclassified|cystathionine_beta-lyase_patB 3000025 patB +gi:685904080:ref:WP_031644138.1:|FEATURES|cystathionine_beta-lyase_patB|unclassified|cystathionine_beta-lyase_patB 3000025 patB +NP_253005.1|FEATURES|MvaT|multidrug|MvaT 3004069 MvaT +NP_417544.5|FEATURES|patA|fluoroquinolone|patA 3000024 patA +NP_416340.1|FEATURES|mgrB|multidrug|mgrB 3003820 mgrB diff --git a/argnorm/data/manual_curation/megares_curation.tsv b/argnorm/data/manual_curation/megares_curation.tsv index f68b584..7d1ef9a 100644 --- a/argnorm/data/manual_curation/megares_curation.tsv +++ b/argnorm/data/manual_curation/megares_curation.tsv @@ -1,88 +1,88 @@ -Original ID ARO -MEG_8443|Drugs|Pleuromutilin|Pleuromutilin-resistant_23S_rRNA_mutation|P23S|RequiresSNPConfirmation 3005083 -MEG_4060|Metals|Multi-metal_resistance|Multi-metal_resistance_protein|MREA -MEG_2865|Drugs|Phenicol|Chloramphenicol_hydrolase|ESTD -MEG_1732|Drugs|Lipopeptides|Daptomycin-resistant_mutant|CLS|RequiresSNPConfirmation 3003092 -MEG_2933|Drugs|Mycobacterium_tuberculosis-specific_Drug|Para-aminosalicylic_acid_resistant_mutant|FOLC|RequiresSNPConfirmation 3004157 -MEG_8700|Multi-compound|Biocide_and_metal_resistance|Biocide_and_metal_ABC_efflux_pumps|SITABCD -MEG_8447|Drugs|Fluoroquinolones|Fluoroquinolone-resistant_DNA_topoisomerases|PARC|RequiresSNPConfirmation 3000274 -MEG_6241|Drugs|betalactams|Class_A_betalactamases|SHV 3001059 -MEG_7974|Drugs|betalactams|Class_C_betalactamase_regulator|AMPCR|RequiresSNPConfirmation -MEG_3987|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004546 -MEG_6055|Drugs|Mycobacterium_tuberculosis-specific_Drug|Para-aminosalicylic_acid_resistant_mutant|RIBD|RequiresSNPConfirmation 3004184 -MEG_6144|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|RPSL|RequiresSNPConfirmation 3003395 -MEG_3745|Multi-compound|Drug_and_biocide_and_metal_resistance|Drug_and_biocide_and_metal_RND_efflux_pumps|MDTA -MEG_8140|Drugs|Aminoglycosides|Gentamicin-resistant_ATP-binding_protein|GRDA 3003949 -MEG_5285|Drugs|betalactams|Class_A_betalactamases|OXY 3002390 -MEG_8643|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_MFS_efflux_pumps|QACAB -MEG_8644|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_MFS_efflux_pumps|QACAB -MEG_3071|Drugs|Fusidic_acid|Fusidic_acid-resistant_mutation|FUSE|RequiresSNPConfirmation 3003737 -MEG_3986|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004174 -MEG_2062|Metals|Copper_resistance|Copper_resistance_protein|COPL -MEG_8646|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACD -MEG_6137|Drugs|Lipopeptides|Daptomycin-resistant_beta-subunit_of_RNA_polymerase_RpoB|RPOBL|RequiresSNPConfirmation 3003287 -MEG_6136|Drugs|Lipopeptides|Daptomycin-resistant_beta-subunit_of_RNA_polymerase_RpoB|RPOBL|RequiresSNPConfirmation 3003285 -MEG_1180|Drugs|Multi-drug_resistance|Multi-drug_RND_efflux_regulator|ASMA -MEG_1179|Drugs|Multi-drug_resistance|Multi-drug_RND_efflux_regulator|ASMA -MEG_8642|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_MFS_efflux_pumps|QACAB -MEG_497|Drugs|betalactams|Class_C_betalactamases|ACT 3000072 -MEG_8087|Biocides|Aldehyde_resistance|Aldehyde_degradation|FORMA -MEG_2114|Drugs|Phenicol|Chloramphenicol_phosphotransferase|CPT -MEG_8651|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACL -MEG_5337|Drugs|Fluoroquinolones|Fluoroquinolone-resistant_DNA_topoisomerases|PARC|RequiresSNPConfirmation 3000274 -MEG_7344|Drugs|Glycopeptides|VanA-type_resistance_protein|VANA 3000010 -MEG_5780|Drugs|Lipopeptides|Daptomycin-resistant_mutant|PGSA|RequiresSNPConfirmation 3003323 -MEG_8647|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACF -MEG_4033|Drugs|MLS|Macrolide_phosphotransferases|MPHB 3000318 -MEG_8645|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACC -MEG_3980|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004165 -MEG_1|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|A16S|RequiresSNPConfirmation 3003485 -MEG_6963|Drugs|Tetracyclines|Tetracycline-resistant_16S_ribosomal_subunit_protein|TET16S|RequiresSNPConfirmation 3003510 -MEG_3588|Drugs|Lipopeptides|Daptomycin-resistant_mutant|LIAFSR|RequiresSNPConfirmation 3003077 -MEG_5781|Drugs|Phenicol|Phenicol-resistant_23S_rRNA_mutation|PH23S|RequiresSNPConfirmation 3004180 -MEG_3857|Metals|Mercury_resistance|Mercury_resistance_protein|MERC -MEG_3982|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004163 -MEG_2430|Drugs|betalactams|Class_A_betalactamases|CTX -MEG_8648|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACG -MEG_8650|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACH -MEG_3445|Drugs|Mycobacterium_tuberculosis-specific_Drug|Isoniazid-resistant_mutant|KASA|RequiresSNPConfirmation 3003463 -MEG_7259|Drugs|Aminoglycosides|Aminoglycoside-resistant_arabinosyltransferase|TLYA|RequiresSNPConfirmation 3003465 -MEG_1983|Drugs|betalactams|Class_C_betalactamases|CMY 3002095 -MEG_7075|Drugs|Tetracyclines|Tetracycline_resistance_MFS_efflux_pumps|TETE 3000173 -MEG_3983|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004177 -MEG_6147|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|RRSH|RequiresSNPConfirmation 3003372 -MEG_8254|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004836 -MEG_6493|Drugs|betalactams|Class_A_betalactamases|SHV 3001139 -MEG_3993|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004168 -MEG_1319|Drugs|betalactams|Class_A_betalactamases|BLASME 3002379 -MEG_5208|Drugs|betalactams|Class_D_betalactamases|OXA 3001410 -MEG_2414|Drugs|betalactams|Class_A_betalactamases|CTX 3001904 -MEG_2421|Drugs|betalactams|Class_A_betalactamases|CTX 3001927 -MEG_3976|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004134 -MEG_6875|Drugs|betalactams|Class_A_betalactamases|TEM 3000884 -MEG_3989|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004179 -MEG_6964|Drugs|Tetracyclines|Tetracycline-resistant_16S_ribosomal_subunit_protein|TET16S|RequiresSNPConfirmation 3003499 -MEG_2|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|A16S|RequiresSNPConfirmation 3003512 -MEG_3975|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004169 -MEG_2423|Drugs|betalactams|Class_A_betalactamases|CTX 3001932 -MEG_8263|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_RND_efflux_pumps|MTRC|RequiresSNPConfirmation -MEG_985|Drugs|Aminoglycosides|Aminoglycoside_O-nucleotidyltransferases|ANT4-PRIME -MEG_3979|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004176 -MEG_3990|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004171 -MEG_2425|Drugs|betalactams|Class_A_betalactamases|CTX 3002002 -MEG_3129|Drugs|betalactams|Class_A_betalactamases|GES 3002337 -MEG_3131|Drugs|betalactams|Class_A_betalactamases|GES 3002350 -MEG_6146|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|RRSC|RequiresSNPConfirmation 3003333 -MEG_3393|Drugs|betalactams|Class_B_betalactamases|IMP 3002223 -MEG_3991|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004133 -MEG_8679|Drugs|Oxazolidinone|Oxazolidinone-resistant_23S_rRNA_mutation|RRL|RequiresSNPConfirmation 3004937 -MEG_2427|Drugs|betalactams|Class_A_betalactamases|CTX 3001982 -MEG_1490|Drugs|Cationic_antimicrobial_peptides|Cationic_peptide-resistant_16S_ribosomal_subunit_protein|CAP16S|RequiresSNPConfirmation 3003223 -MEG_2393|Drugs|betalactams|Class_A_betalactamases|CTX 3001960 -MEG_333|Drugs|Aminoglycosides|Aminoglycoside_N-acetyltransferases|AAC6-PRIME 3002578 -MEG_3396|Drugs|betalactams|Class_B_betalactamases|IMP 3002205 -MEG_1544|Drugs|betalactams|Class_A_betalactamases|CARB 3002243 -MEG_2429|Drugs|betalactams|Class_A_betalactamases|CTX 3001943 -MEG_5148|Drugs|betalactams|Class_D_betalactamases|OXA 3001555 -MEG_7604|Drugs|Glycopeptides|VanD-type_accessory_protein|VANYD 3002957 -MEG_8253|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004836 \ No newline at end of file +Original ID ARO Description +MEG_8443|Drugs|Pleuromutilin|Pleuromutilin-resistant_23S_rRNA_mutation|P23S|RequiresSNPConfirmation 3005083 +MEG_4060|Metals|Multi-metal_resistance|Multi-metal_resistance_protein|MREA Metal resistance. No mapping +MEG_2865|Drugs|Phenicol|Chloramphenicol_hydrolase|ESTD 3000387 +MEG_1732|Drugs|Lipopeptides|Daptomycin-resistant_mutant|CLS|RequiresSNPConfirmation 3003092 +MEG_2933|Drugs|Mycobacterium_tuberculosis-specific_Drug|Para-aminosalicylic_acid_resistant_mutant|FOLC|RequiresSNPConfirmation 3004157 +MEG_8700|Multi-compound|Biocide_and_metal_resistance|Biocide_and_metal_ABC_efflux_pumps|SITABCD Metal + Biocide resistance. No mapping +MEG_8447|Drugs|Fluoroquinolones|Fluoroquinolone-resistant_DNA_topoisomerases|PARC|RequiresSNPConfirmation 3000274 +MEG_6241|Drugs|betalactams|Class_A_betalactamases|SHV 3001059 +MEG_7974|Drugs|betalactams|Class_C_betalactamase_regulator|AMPCR|RequiresSNPConfirmation 3000076 +MEG_3987|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004546 +MEG_6055|Drugs|Mycobacterium_tuberculosis-specific_Drug|Para-aminosalicylic_acid_resistant_mutant|RIBD|RequiresSNPConfirmation 3004184 +MEG_6144|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|RPSL|RequiresSNPConfirmation 3003395 +MEG_3745|Multi-compound|Drug_and_biocide_and_metal_resistance|Drug_and_biocide_and_metal_RND_efflux_pumps|MDTA Metal + Biocide resistance. No mapping +MEG_8140|Drugs|Aminoglycosides|Gentamicin-resistant_ATP-binding_protein|GRDA 3003949 +MEG_5285|Drugs|betalactams|Class_A_betalactamases|OXY 3002390 +MEG_8643|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_MFS_efflux_pumps|QACAB Biocide resistance. No mapping +MEG_8644|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_MFS_efflux_pumps|QACAB Biocide resistance. No mapping +MEG_3071|Drugs|Fusidic_acid|Fusidic_acid-resistant_mutation|FUSE|RequiresSNPConfirmation 3003737 +MEG_3986|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004174 +MEG_2062|Metals|Copper_resistance|Copper_resistance_protein|COPL Metal resistance. No mapping +MEG_8646|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACD Biocide resistance. No mapping +MEG_6137|Drugs|Lipopeptides|Daptomycin-resistant_beta-subunit_of_RNA_polymerase_RpoB|RPOBL|RequiresSNPConfirmation 3003287 +MEG_6136|Drugs|Lipopeptides|Daptomycin-resistant_beta-subunit_of_RNA_polymerase_RpoB|RPOBL|RequiresSNPConfirmation 3003285 +MEG_1180|Drugs|Multi-drug_resistance|Multi-drug_RND_efflux_regulator|ASMA Muti-drug resistance. No mapping +MEG_1179|Drugs|Multi-drug_resistance|Multi-drug_RND_efflux_regulator|ASMA Muti-drug resistance. No mapping +MEG_8642|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_MFS_efflux_pumps|QACAB Biocide resistance. No mapping +MEG_497|Drugs|betalactams|Class_C_betalactamases|ACT 3000072 +MEG_8087|Biocides|Aldehyde_resistance|Aldehyde_degradation|FORMA Biocide resistance. No mapping +MEG_2114|Drugs|Phenicol|Chloramphenicol_phosphotransferase|CPT 3000249 +MEG_8651|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACL Biocide resistance. No mapping +MEG_5337|Drugs|Fluoroquinolones|Fluoroquinolone-resistant_DNA_topoisomerases|PARC|RequiresSNPConfirmation 3000274 +MEG_7344|Drugs|Glycopeptides|VanA-type_resistance_protein|VANA 3000010 +MEG_5780|Drugs|Lipopeptides|Daptomycin-resistant_mutant|PGSA|RequiresSNPConfirmation 3003323 +MEG_8647|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACF Biocide resistance. No mapping +MEG_4033|Drugs|MLS|Macrolide_phosphotransferases|MPHB 3000318 +MEG_8645|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACC Biocide resistance. No mapping +MEG_3980|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004165 +MEG_1|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|A16S|RequiresSNPConfirmation 3003485 +MEG_6963|Drugs|Tetracyclines|Tetracycline-resistant_16S_ribosomal_subunit_protein|TET16S|RequiresSNPConfirmation 3003510 +MEG_3588|Drugs|Lipopeptides|Daptomycin-resistant_mutant|LIAFSR|RequiresSNPConfirmation 3003077 +MEG_5781|Drugs|Phenicol|Phenicol-resistant_23S_rRNA_mutation|PH23S|RequiresSNPConfirmation 3004180 +MEG_3857|Metals|Mercury_resistance|Mercury_resistance_protein|MERC Metal resistance. No mapping +MEG_3982|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004163 +MEG_2430|Drugs|betalactams|Class_A_betalactamases|CTX 3000016 +MEG_8648|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACG Biocide resistance. No mapping +MEG_8650|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACH Biocide resistance. No mapping +MEG_3445|Drugs|Mycobacterium_tuberculosis-specific_Drug|Isoniazid-resistant_mutant|KASA|RequiresSNPConfirmation 3003463 +MEG_7259|Drugs|Aminoglycosides|Aminoglycoside-resistant_arabinosyltransferase|TLYA|RequiresSNPConfirmation 3003465 +MEG_1983|Drugs|betalactams|Class_C_betalactamases|CMY 3002095 +MEG_7075|Drugs|Tetracyclines|Tetracycline_resistance_MFS_efflux_pumps|TETE 3000173 +MEG_3983|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004177 +MEG_6147|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|RRSH|RequiresSNPConfirmation 3003372 +MEG_8254|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004836 +MEG_6493|Drugs|betalactams|Class_A_betalactamases|SHV 3001139 +MEG_3993|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004168 +MEG_1319|Drugs|betalactams|Class_A_betalactamases|BLASME 3002379 +MEG_5208|Drugs|betalactams|Class_D_betalactamases|OXA 3001410 +MEG_2414|Drugs|betalactams|Class_A_betalactamases|CTX 3001904 +MEG_2421|Drugs|betalactams|Class_A_betalactamases|CTX 3001927 +MEG_3976|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004134 +MEG_6875|Drugs|betalactams|Class_A_betalactamases|TEM 3000884 +MEG_3989|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004179 +MEG_6964|Drugs|Tetracyclines|Tetracycline-resistant_16S_ribosomal_subunit_protein|TET16S|RequiresSNPConfirmation 3003499 +MEG_2|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|A16S|RequiresSNPConfirmation 3003512 +MEG_3975|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004169 +MEG_2423|Drugs|betalactams|Class_A_betalactamases|CTX 3001932 +MEG_8263|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_RND_efflux_pumps|MTRC|RequiresSNPConfirmation Biocide resistance. No mapping +MEG_985|Drugs|Aminoglycosides|Aminoglycoside_O-nucleotidyltransferases|ANT4-PRIME 3000229 +MEG_3979|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004176 +MEG_3990|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004171 +MEG_2425|Drugs|betalactams|Class_A_betalactamases|CTX 3002002 +MEG_3129|Drugs|betalactams|Class_A_betalactamases|GES 3002337 +MEG_3131|Drugs|betalactams|Class_A_betalactamases|GES 3002350 +MEG_6146|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|RRSC|RequiresSNPConfirmation 3003333 +MEG_3393|Drugs|betalactams|Class_B_betalactamases|IMP 3002223 +MEG_3991|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004133 +MEG_8679|Drugs|Oxazolidinone|Oxazolidinone-resistant_23S_rRNA_mutation|RRL|RequiresSNPConfirmation 3004937 +MEG_2427|Drugs|betalactams|Class_A_betalactamases|CTX 3001982 +MEG_1490|Drugs|Cationic_antimicrobial_peptides|Cationic_peptide-resistant_16S_ribosomal_subunit_protein|CAP16S|RequiresSNPConfirmation 3003223 +MEG_2393|Drugs|betalactams|Class_A_betalactamases|CTX 3001960 +MEG_333|Drugs|Aminoglycosides|Aminoglycoside_N-acetyltransferases|AAC6-PRIME 3002578 +MEG_3396|Drugs|betalactams|Class_B_betalactamases|IMP 3002205 +MEG_1544|Drugs|betalactams|Class_A_betalactamases|CARB 3002243 +MEG_2429|Drugs|betalactams|Class_A_betalactamases|CTX 3001943 +MEG_5148|Drugs|betalactams|Class_D_betalactamases|OXA 3001555 +MEG_7604|Drugs|Glycopeptides|VanD-type_accessory_protein|VANYD 3002957 +MEG_8253|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004836 diff --git a/argnorm/data/manual_curation/ncbi_curation.tsv b/argnorm/data/manual_curation/ncbi_curation.tsv index 1672582..0ca02a4 100644 --- a/argnorm/data/manual_curation/ncbi_curation.tsv +++ b/argnorm/data/manual_curation/ncbi_curation.tsv @@ -1,234 +1,234 @@ -Original ID ARO Gene Name in CARD -0|NDR16747.1|1|1|sel28|sel28||1|||staphylococcal_enterotoxin_type_28 -100173053|ABF69110.1|1|1|beta-4|beta-4||1|KAPPA|INTIMIN|intimin_type_kappa -100173075|ABF69121.1|1|1|epsilon-2|epsilon-2||1|EPSILON|INTIMIN|intimin_type_epsilon -100173077|ABF69122.1|1|1|alpha-5|alpha-5||1|NU|INTIMIN|intimin_type_nu -1028085756|WP_063844287.1|1|1|cpt|cpt|phosphotransferase|2|CHLORAMPHENICOL|PHENICOL|chloramphenicol_phosphotransferase_CPT 3000249 chloramphenicol phophotransferase -1035517479|BAA82061.2|1|1|merB1|merB1||1|ORGANOMERCURY|MERCURY|organomercurial_lyase_MerB1 -1061414|AAB09624.1|1|1|arsR_R46|arsR_R46||1|ARSENIC|ARSENIC|As(III)-sensing_metalloregulatory_transcriptional_repressor_ArsR -1088258|AAA98293.1|1|1|terE|terE||1|TELLURIUM|TELLURIUM|tellurium_resistance_cAMP_binding_protein_TerE -1122937092|OKT93637.1|1|1|crsA|crsA||1|||CS26_fimbrial_major_subunit_CrsA -1150846|AAA85196.1|1|1|cnf1|cnf1||1|||cytotoxic_necrotizing_factor_CNF1 -11527908|AAG37043.1|1|1|espC|espC||1|||serine_protease_autotransporter_toxin_EspC -115500654|BAF33885.1|1|1|sepA|sepA||1|||serine_protease_autotransporter_toxin_SepA -115514355|ABJ02430.1|1|1|ireA|ireA||1|||TonB-dependent_siderophore_receptor_IreA -1159362952|OPH66324.1|1|1|lpfA1|lpfA1||1|||long_polar_fimbria_major_subunit_LpfA1 -1212330120|ASF80766.1|1|1|LHR_yfdX2|LHR_yfdX2||1|||heat_resistance_protein_YfdX2 -1212330125|ASF80771.1|1|1|LHR_hsp20B|LHR_hsp20B||1|||small_heat_shock_protein_sHSP20-GI -121308153|CAM11313.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA -121308155|CAM11314.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA -121308173|CAM11323.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA -121308175|CAM11324.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA -1232061|AAA92621.1|1|1|f17g|f17g||1|||F17G_fimbrial_adhesin -123229145|ABM73977.1|1|1|bont_B3|bont_B3||1|||botulinum_neurotoxin_subtype_B3 -124106630|BAF45437.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -124106634|BAF45439.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -124106636|BAF45440.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -124106650|BAF45447.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -124106658|BAF45451.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -124106674|BAF45459.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -12518278|AAG58695.1|1|1|lpfA1|lpfA1||1|||long_polar_fimbria_major_subunit_LpfA1 -1325136444|AUN52700.1|1|1|rmpD|rmpD||1|||mucoid_phenotype_synthesis_protein_RmpD -13310561|AAK18385.1|1|1|sepA|sepA||1|||serine_protease_autotransporter_toxin_SepA -13701623|BAB42916.1|1|1|seo|seo||1|||staphylococcal_enterotoxin_type_O -13774144|BAB43874.1|1|1|cadD|cadD||1|CADMIUM|CADMIUM|cadmium_resistance_transporter_CadD -13811426|AAK40114.1|1|1|hreP|hreP||1|||subtilisin/kexin-like_serine_protease_HreP -139002545|BAF52034.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -139002548|BAF52035.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -139002755|BAF52033.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -139003779|BAF52358.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -139003787|BAF52360.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -139003791|BAF52362.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -139003796|BAF52363.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -139003798|BAF52364.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -139003804|BAF52365.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -139003810|BAF52366.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -139003812|BAF52367.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -139003825|BAF52370.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -139003840|BAF52374.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -139003851|BAF52377.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -143192|AAA83978.1|1|1|merB1|merB1||1|ORGANOMERCURY|MERCURY|organomercurial_lyase_MerB1 -1437352259|SUK66413.1|1|1|sel30|sel30||1|||staphylococcal_enterotoxin_type_30 -144867|AAA23263.1|1|1|bont_F6|bont_F6||1|||botulinum_neurotoxin_subtype_F6 -144928|AAA72120.1|1|1|cpe|cpe||1|||enterotoxin_CPE -14579333|AAK69210.1|1|1|yopD|yopD||1|||type_III_secretion_system_translocon_subunit_YopD -146150132|ABQ02454.1|1|1|rho-1|rho-1||1|RHO|INTIMIN|intimin_type_rho -147830|AAA24632.1|1|1|stxA2f|stxA2f||1|STX2F|STX2|Shiga_toxin_Stx2f_subunit_A -148750667|ABR09934.1|1|1|stxA2c|stxA2c||1|STX2C|STX2|Shiga_toxin_Stx2c_subunit_A -150729|AAA25638.1|1|1|arsC_thio|arsC_thio||1|ARSENATE|ARSENIC|thioredoxin-dependent_arsenate_reductase -151858|AAA21095.1|1|1|arsB_R773|arsB_R773||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB -152520|AAA26403.1|1|1|klaC|klaC||1|TELLURIUM|TELLURIUM|tellurium_resistance_system_protein_klaC -15419713|AAK97135.1|1|1|csaB|csaB||1|||CS4_pilus_major_pilin_CsaB -1545992|AAB42204.1|1|1|arsB_pYV|arsB_pYV||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB -15528433|CAC69250.1|1|1|MerP_Gneg|MerP_Gneg||1|MERCURY|MERCURY|mercury_resistance_system_periplasmic_binding_protein_MerP -155344|AAA27587.1|1|1|arsR_pSX267|arsR_pSX267||1|ARSENIC|ARSENIC|As(III)-sensing_metalloregulatory_transcriptional_repressor_ArsR -155345|AAA27588.1|1|1|arsB_pI258|arsB_pI258||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB -155346|AAA27589.1|1|1|arsC_thio|arsC_thio||1|ARSENATE|ARSENIC|thioredoxin-dependent_arsenate_reductase -157076729|ABV16438.1|1|1|eatA|eatA||1|||serine_protease_autotransporter_toxin_EatA -15723940|AAL06387.1|1|1|espF|espF||1|||type_III_secretion_system_LEE_effector_EspF -157688250|ABQ02442.1|1|1|ehxA|ehxA||1|||enterohemolysin_EhxA -157688252|ABQ02443.1|1|1|ehxA|ehxA||1|||enterohemolysin_EhxA -157688256|ABQ02445.1|1|1|ehxA|ehxA||1|||enterohemolysin_EhxA -159132570|BAF91946.1|1|1|bont_B6|bont_B6||1|||botulinum_neurotoxin_subtype_B6 -159885585|BAF92845.1|1|1|tir|tir||1|||type_III_secretion_system_LEE_translocated_intimin_receptor_Tir -16417609|AAL18821.1|1|1|epeA|epeA||1|||serine_protease_autotransporter_EpeA -164457634|BAF96541.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA -1653492|BAA18405.1|1|1|acr3|acr3||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_Acr3 -166409298|BAG06667.1|1|1|ses|ses||1|||staphylococcal_enterotoxin_type_S -168986470|BAG12001.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -169294941|EDS77074.1|1|1|c3bot2|c3bot2||1|||C3_toxin -170518859|ACB17037.1|1|1|air|air||1|||inverse_autotransporter_adhesin_EaeX/Air -170521958|ACB20136.1|1|1|iha|iha||1|||bifunctional_siderophore_receptor/adhesin_Iha -1753231480|KAA9473339.1|1|1|arsB_Lm|arsB_Lm||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB -1764164|AAC44731.1|1|1|espC|espC||1|||serine_protease_autotransporter_toxin_EspC -1796443971|QHF70768.1|1|1|fanC|fanC||1|||F5_fimbrial_major_subunit_protein_FanC -18147064|BAB83020.1|1|1|stxA2g|stxA2g||1|STX2G|STX2|Shiga_toxin_Stx2g_subunit_A -18147067|BAB83022.1|1|1|stxA1c|stxA1c||1|STX1C|STX1|Shiga_toxin_Stx1c_subunit_A -18462537|AAL72309.1|1|1|sepA|sepA||1|||serine_protease_autotransporter_toxin_SepA -188998312|ACD67884.1|1|1|cpd|cpd||1|||beta-channel_forming_cytolysin_CPD -192758587|ACF05260.1|1|1|agg4A|agg4A||1|||aggregative_adherence_fimbria_4_major_subunit_Agg4A/HdaA -195182801|BAG66379.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -195957566|ACG59676.1|1|1|espA|espA||1|||type_III_secretion_system_LEE_translocon_filament_protein_EspA -196475602|ACG76368.1|1|1|arsP|arsP||1|ORGANOARSENIC|ARSENIC|organoarsenical_efflux_permease_ArsP -198040639|CAR56625.1|1|1|cblA_Bc|cblA_Bc||1|||cable_pilus_major_pilin_CblA -215266044|CAS10463.1|1|1|espC|espC||1|||serine_protease_autotransporter_toxin_EspC -215489834|CAS06720.1|1|1|gamma-2|gamma-2||1|THETA|INTIMIN|intimin_type_theta -215489836|CAS06721.1|1|1|alpha-6|alpha-6||1|ZETA|INTIMIN|intimin_type_zeta -215489840|CAS06723.1|1|1|alpha-6|alpha-6||1|ZETA|INTIMIN|intimin_type_zeta -2159997|BAA20336.1|1|1|MerP_Gneg|MerP_Gneg||1|MERCURY|MERCURY|mercury_resistance_system_periplasmic_binding_protein_MerP -21636536|AAM70045.1|1|1|stxA2a|stxA2a||1|STX2A|STX2|Shiga_toxin_Stx2a_subunit_A -218349792|CAQ87187.1|1|1|iroN|iroN||1|||siderophore_salmochelin_receptor_IroN -218428762|CAR09703.2|1|1|ireA|ireA||1|||TonB-dependent_siderophore_receptor_IreA -218434398|CAR15326.1|1|1|air|air||1|||inverse_autotransporter_adhesin_EaeX/Air -22003413|AAM88668.1|1|1|cueA|cueA||1|COPPER|COPPER|copper_resistance_metal-translocating_P1-type_ATPase_CueA -221361465|CAX18635.1|1|1|espF|espF||1|||type_III_secretion_system_LEE_effector_EspF -222708689|ACM67146.1|1|1|alpha-2|alpha-2||1|ALPHA|INTIMIN|intimin_type_alpha -222708701|ACM67152.1|1|1|beta-2|beta-2||1|BETA|INTIMIN|intimin_type_beta -222708703|ACM67153.1|1|1|lambda-2|lambda-2||1|LAMBDA|INTIMIN|intimin_type_lambda -222708705|ACM67154.1|1|1|gamma-6|gamma-6||1|GAMMA|INTIMIN|intimin_type_gamma -222708707|ACM67155.1|1|1|epsilon-8|epsilon-8||1|EPSILON|INTIMIN|intimin_type_epsilon -222708709|ACM67156.1|1|1|epsilon-8|epsilon-8||1|EPSILON|INTIMIN|intimin_type_epsilon -222708713|ACM67158.1|1|1|epsilon-6|epsilon-6||1|EPSILON|INTIMIN|intimin_type_epsilon -222708719|ACM67161.1|1|1|beta-2|beta-2||1|BETA|INTIMIN|intimin_type_beta -222708721|ACM67162.1|1|1|gamma-4|gamma-4||1|GAMMA|INTIMIN|intimin_type_gamma -222708723|ACM67163.1|1|1|rho-3|rho-3||1|RHO|INTIMIN|intimin_type_rho -222708727|ACM67165.1|1|1|gamma-3|gamma-3||1|GAMMA|INTIMIN|intimin_type_gamma -222708731|ACM67167.1|1|1|epsilon-6|epsilon-6||1|EPSILON|INTIMIN|intimin_type_epsilon -224612960|CAQ77251.1|1|1|hlyA-alpha|hlyA-alpha||1|||RTX_toxin_hemolysin_HlyA -22652647|AAN03785.1|1|1|cnf1|cnf1||1|||cytotoxic_necrotizing_factor_CNF1 -22652649|AAN03786.1|1|1|cnf1|cnf1||1|||cytotoxic_necrotizing_factor_CNF1 -22759881|BAC10987.1|1|1|stxA1a|stxA1a||1|STX1A|STX1|Shiga_toxin_Stx1a_subunit_A -229260169|ACQ51206.1|1|1|bont_B5|bont_B5||1|||botulinum_neurotoxin_subtype_B5 -238549598|BAH65949.1|1|1|iroN|iroN||1|||siderophore_salmochelin_receptor_IroN -24137633|BAC22064.1|1|1|bont_B2|bont_B2||1|||botulinum_neurotoxin_subtype_B2 -24984576|AAN68576.1|1|1|mrdH|mrdH||1|COPPER/NICKEL|COPPER/NICKEL|Ni(II)/Co(II)_efflux_transporter_permease_subunit_MrdH -254939479|BAH86759.1|1|1|stxA2f|stxA2f||1|STX2F|STX2|Shiga_toxin_Stx2f_subunit_A -2576413|AAB82330.1|1|1|aafA|aafA||1|||aggregative_adherence_fimbria_II_major_subunit_AafA -257759657|BAI31154.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -257766024|BAI37519.1|1|1|espF|espF||1|||type_III_secretion_system_LEE_effector_EspF -2588785|BAA23166.1|1|1|merG|merG||1|PHENYLMERCURY|MERCURY|phenylmercury_resistance_protein_MerG -25987939|AAN76093.1|1|1|iroN|iroN||1|||siderophore_salmochelin_receptor_IroN -260213855|CBE05858.1|1|1|bin_CdtB|bin_CdtB||1|||ADP-ribosylating_binary_toxin_binding_subunit_CdtB -260279121|BAI44131.1|1|1|agg5A|agg5A||1|||aggregative_adherence_fimbria_V_major_subunit_Agg5A -26107524|AAN79707.1|1|1|iroN|iroN||1|||siderophore_salmochelin_receptor_IroN -26111414|AAN83596.1|1|1|ireA|ireA||1|||TonB-dependent_siderophore_receptor_IreA -270269184|ACZ66176.1|1|1|sel31|sel31||1|||staphylococcal_enterotoxin_type_31 -2765304|CAA73668.1|1|1|lukD|lukD||1|||bi-component_leukocidin_LukED_subunit_D -281603818|ADA76801.1|1|1|sepA|sepA||1|||serine_protease_autotransporter_toxin_SepA -282160579|ADA79569.1|1|1|bont_F4|bont_F4||1|||botulinum_neurotoxin_subtype_F4 -282948281|CBG87859.1|1|1|nleB|nleB||1|||type_III_secretion_system_effector_arginine_glycosyltransferase_NleB -282950079|CBG89712.1|1|1|espA|espA||1|||type_III_secretion_system_LEE_translocon_filament_protein_EspA -284924615|CBG27798.1|1|1|aafD|aafD||1|||aggregative_adherence_fimbria_II_chaperone_AafD -2853151|CAA11820.1|1|1|cfsA|cfsA||1|||CS5_fimbrial_major_subunit_CsfA -2865302|AAC38394.1|1|1|espA|espA||1|||type_III_secretion_system_LEE_translocon_filament_protein_EspA -2865304|AAC38396.1|1|1|espB|espB||1|||type_III_secretion_system_LEE_translocon_pore-forming_subunit_EspB -2865308|AAC38400.1|1|1|espF|espF||1|||type_III_secretion_system_LEE_effector_EspF -2879920|BAA24823.1|1|1|arsB_pKW301|arsB_pKW301||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB -290432|AAA23737.1|1|1|f17a|f17a||1|||F17A_fimbrial_adhesin -2947088|AAC38232.1|1|1|MerP_Gneg|MerP_Gneg||1|MERCURY|MERCURY|mercury_resistance_system_periplasmic_binding_protein_MerP -295060061|ADF64798.1|1|1|ncrC|ncrC||1|COPPER/NICKEL|COPPER/NICKEL|Ni(II)/Co(II)_efflux_transporter_permease_subunit_NcrC -297592330|ADI47068.1|1|1|iha|iha||1|||bifunctional_siderophore_receptor/adhesin_Iha -29895498|AAP08785.1|1|1|nheC|nheC||1|||non-hemolytic_enterotoxin_NHE_subunit_C -29896770|AAP10048.1|1|1|hblC|hblC||1|||hemolytic_enterotoxin_HBL_lytic_component_L2 -30043229|AAP18950.1|1|1|lpfA-O113|lpfA-O113||1|||long_polar_fimbria_major_subunit_LpfA-O113 -302333605|ADL23798.1|1|1|scn|scn||1|||complement_inhibitor_SCIN-A -3095184|AAC26634.1|1|1|pet|pet||1|||serine_protease_autotransporter_toxin_Pet -3115184|CAA73506.1|1|1|espA|espA||1|||type_III_secretion_system_LEE_translocon_filament_protein_EspA -325048858|BAJ79293.1|1|1|aafA|aafA||1|||aggregative_adherence_fimbria_II_major_subunit_AafA -325048862|BAJ79295.1|1|1|aafA|aafA||1|||aggregative_adherence_fimbria_II_major_subunit_AafA -332312684|EGJ25779.1|1|1|arsD_like|arsD_like||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_metallochaperone_ArsD-related_protein -332312690|EGJ25785.1|1|1|arsB_Lm|arsB_Lm||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB -332312691|EGJ25786.1|1|1|arsB_Lm|arsB_Lm||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB -3337077|BAA31836.1|1|1|espP|espP||1|||serine_protease_autotransporter_EspP -33469479|AAQ19775.1|1|1|csdA|csdA||1|||CS19_fimbria_major_subunit_CsdA -3372542|AAC78590.1|1|1|sej|sej||1|||staphylococcal_enterotoxin_type_J -3417251|CAA12346.1|1|1|espA|espA||1|||type_III_secretion_system_LEE_translocon_filament_protein_EspA -3513658|AAC33908.1|1|1|merC|merC||1|ORGANOMERCURY|MERCURY|organomercurial_transporter_MerC -354855824|EHF16297.1|1|1|aggB|aggB||1|||aggregative_adherence_fimbria_I_minor_subunit_AggB -354855825|EHF16298.1|1|1|aggA|aggA||1|||aggregative_adherence_fimbria_I_major_subunit_AggA -356484840|AET11941.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA -356484899|AET11995.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA -356484913|AET12008.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA -371976459|EHO93748.1|1|1|aur|aur||1|||zinc_metalloproteinase_aureolysin -374343131|BAL46940.1|1|1|alpha|alpha||1|ALPHA|INTIMIN|intimin_type_alpha -374343133|BAL46941.1|1|1|epsilon-2|epsilon-2||1|EPSILON|INTIMIN|intimin_type_epsilon -374343515|BAL47132.1|1|1|epsilon-4|epsilon-4||1|EPSILON|INTIMIN|intimin_type_epsilon -374343603|BAL47176.1|1|1|rho-2|rho-2||1|YPSILON|INTIMIN|intimin_type_ypsilon -374343609|BAL47179.1|1|1|epsilon-2|epsilon-2||1|EPSILON|INTIMIN|intimin_type_epsilon -374343613|BAL47181.1|1|1|alpha|alpha||1|ALPHA|INTIMIN|intimin_type_alpha -380005626|AFD29291.1|1|1|aalE|aalE||1|||CS23_fimbrial_major_subunit_AalE -380248692|CBW53086.1|1|1|iha|iha||1|||bifunctional_siderophore_receptor/adhesin_Iha -38194523|AAR13270.1|1|1|iroN|iroN||1|||siderophore_salmochelin_receptor_IroN -389595513|AFK88558.1|1|1|sat_auto|sat_auto||1|||serine_protease_autotransporter_toxin_Sat -390980685|AFM31243.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 -394333411|AFN27480.1|1|1|bonA|bonA||1|||bongkrekic_acid_type_I_polyketide_synthase_BonA -395406670|AFN61309.1|1|1|bont_B8|bont_B8||1|||botulinum_neurotoxin_subtype_B8 -403299|CAA50007.1|1|1|cnf1|cnf1||1|||cytotoxic_necrotizing_factor_CNF1 -406780449|AFS59871.1|1|1|sepA|sepA||1|||serine_protease_autotransporter_toxin_SepA -414655|CAA51960.1|1|1|ibp|ibp||1|||ADP-ribosylating_binary_toxin_iota_binding_subunit_Ib -42529|CAA43558.1|1|1|papG-III|papG-III||1|||P_fimbria_tip_G-adhesin_PapG-III -4335912|AAD17513.1|1|1|f17g|f17g||1|||F17G_fimbrial_adhesin -4335914|AAD17514.1|1|1|f17g|f17g||1|||F17G_fimbrial_adhesin -46369880|AAS89773.1|1|1|cosA|cosA||1|||PCF071_fimbrial_major_subunit_CosA -46369885|AAS89777.1|1|1|csbA|csbA||1|||CS17_fimbrial_major_subunit_CsbA -46949087|AAT07441.1|1|1|cooA|cooA||1|||CS1_fimbrial_major_subunit_CooA -472420551|EMS03085.1|1|1|aggA|aggA||1|||aggregative_adherence_fimbria_I_major_subunit_AggA -47600653|CAE55775.1|1|1|sat_auto|sat_auto||1|||serine_protease_autotransporter_toxin_Sat -50956507|AAT90756.1|1|1|tcbA|tcbA||1|||Tc_family_toxin_subunit_TcbA -51949833|AAU14850.1|1|1|cpb2|cpb2||1|||beta-2_toxin_CPB2 -52854784|AAU88264.1|1|1|cdtB|cdtB||1|||cytolethal_distending_toxin_nuclease_subunit_CdtB -531398|AAA57452.1|1|1|aggC|aggC||1|||aggregative_adherence_fimbria_I_usher_protein_AggC -534988|CAA85366.1|1|1|stxA1a|stxA1a||1|STX1A|STX1|Shiga_toxin_Stx1a_subunit_A -535089|CAA85370.1|1|1|stxA1c|stxA1c||1|STX1C|STX1|Shiga_toxin_Stx1c_subunit_A -535625057|EQX61716.1|1|1|aggA|aggA||1|||aggregative_adherence_fimbria_I_major_subunit_AggA -53850832|AAU95470.1|1|1|nleB|nleB||1|||type_III_secretion_system_effector_arginine_glycosyltransferase_NleB -54311626|CAG17541.1|1|1|espA|espA||1|||type_III_secretion_system_LEE_translocon_filament_protein_EspA -545581792|AGW33874.1|1|1|lukS-PV|lukS-PV||1|||Panton-Valentine_bi-component_leukocidin_subunit_S -550423|CAA57277.1|1|1|hlgC|hlgC||1|||bi-component_gamma-hemolysin_HlgCB_subunit_C -57434439|CAI43856.1|1|1|espF|espF||1|||type_III_secretion_system_LEE_effector_EspF -586640776|AHJ80155.1|1|1|stxA1e|stxA1e||1|STX1E|STX1|Shiga_toxin_Stx1e_subunit_A -61652455|AAX47730.1|1|1|tir|tir||1|||type_III_secretion_system_LEE_translocated_intimin_receptor_Tir -619130|CAA58527.1|1|1|pcoC|pcoC||1|COPPER|COPPER|copper_resistance_system_metallochaperone_PcoC -62085706|AAX63245.1|1|1|fedF|fedF||1|||F18_fimbrial_adhesin_subunit_FedF -62085734|AAX63259.1|1|1|fedF|fedF||1|||F18_fimbrial_adhesin_subunit_FedF -6470209|AAF13663.1|1|1|capB|capB||1|||capsule_biosynthesis_protein_CapB -663201|CAA54115.1|1|1|nfaE|nfaE||1|||Dr_family_non-fimbrial_adhesin_I_chaperone_NfaE -6687466|CAB64953.1|1|1|stxA2f|stxA2f||1|STX2F|STX2|Shiga_toxin_Stx2f_subunit_A -674651835|CDY80020.1|1|1|LHR_hsp20A|LHR_hsp20A||1|||small_heat_shock_protein_sHSP20 -73476899|AAZ76514.1|1|1|espP|espP||1|||serine_protease_autotransporter_EspP -755408432|AJJ21446.1|1|1|yopM|yopM||1|||type_III_secretion_system_effector_YopM -760237696|AJP10335.1|1|1|tcdR|tcdR||1|||glycosylating_toxin_sigma_factor_TcdR -760237700|AJP10339.1|1|1|tcdA|tcdA||1|||glycosylating_toxin_TcdA -812239686|CNC65351.1|1|1|yadA|yadA||1|||trimeric_autotransporter_adhesin_YadA -81240477|ABB61187.1|1|1|iroN|iroN||1|||siderophore_salmochelin_receptor_IroN -817048098|AKF16652.1|1|1|netF|netF||1|||necrotizing_enteritis_toxin_NetF -821787072|KLB41245.1|1|1|copL|copL||1|COPPER|COPPER|transcriptional_regulator_CopL -83308567|CAI79539.1|1|1|eatA|eatA||1|||serine_protease_autotransporter_toxin_EatA -844574223|AKN09807.1|1|1|yopJ_gen|yopJ_gen||1|||YopJ/YopP_family_T3SS_effector_serine/threonine_acetyltransferase -85676543|BAE77793.1|1|1|arsR_K-12|arsR_K-12||1|ARSENIC|ARSENIC|As(III)-sensing_metalloregulatory_transcriptional_repressor_ArsR -86753172|ABD14714.1|1|1|cesD|cesD||1|||cereulide_export_ABC_transporter_permease_subunit_CesD -886953|CAA88252.1|1|1|sepA|sepA||1|||serine_protease_autotransporter_toxin_SepA -91075443|ABE10324.1|1|1|cnf1|cnf1||1|||cytotoxic_necrotizing_factor_CNF1 -94480755|CAK02719.1|1|1|cnf1|cnf1||1|||cytotoxic_necrotizing_factor_CNF1 -991872253|AMG40538.1|1|1|sel|sel||1|||staphylococcal_enterotoxin_type_L -997194215|CXT91862.1|1|1|sel33|sel33||1|||staphylococcal_enterotoxin_type_33 +Original ID ARO Gene Name in CARD Description +0|NDR16747.1|1|1|sel28|sel28||1|||staphylococcal_enterotoxin_type_28 General stress response/Virulence gene +100173053|ABF69110.1|1|1|beta-4|beta-4||1|KAPPA|INTIMIN|intimin_type_kappa General stress response/Virulence gene +100173075|ABF69121.1|1|1|epsilon-2|epsilon-2||1|EPSILON|INTIMIN|intimin_type_epsilon General stress response/Virulence gene +100173077|ABF69122.1|1|1|alpha-5|alpha-5||1|NU|INTIMIN|intimin_type_nu General stress response/Virulence gene +1028085756|WP_063844287.1|1|1|cpt|cpt|phosphotransferase|2|CHLORAMPHENICOL|PHENICOL|chloramphenicol_phosphotransferase_CPT 3000249 chloramphenicol phophotransferase +1035517479|BAA82061.2|1|1|merB1|merB1||1|ORGANOMERCURY|MERCURY|organomercurial_lyase_MerB1 Metal resistance gene +1061414|AAB09624.1|1|1|arsR_R46|arsR_R46||1|ARSENIC|ARSENIC|As(III)-sensing_metalloregulatory_transcriptional_repressor_ArsR Metal resistance gene +1088258|AAA98293.1|1|1|terE|terE||1|TELLURIUM|TELLURIUM|tellurium_resistance_cAMP_binding_protein_TerE Metal resistance gene +1122937092|OKT93637.1|1|1|crsA|crsA||1|||CS26_fimbrial_major_subunit_CrsA General stress response/Virulence gene +1150846|AAA85196.1|1|1|cnf1|cnf1||1|||cytotoxic_necrotizing_factor_CNF1 General stress response/Virulence gene +11527908|AAG37043.1|1|1|espC|espC||1|||serine_protease_autotransporter_toxin_EspC General stress response/Virulence gene +115500654|BAF33885.1|1|1|sepA|sepA||1|||serine_protease_autotransporter_toxin_SepA General stress response/Virulence gene +115514355|ABJ02430.1|1|1|ireA|ireA||1|||TonB-dependent_siderophore_receptor_IreA General stress response/Virulence gene +1159362952|OPH66324.1|1|1|lpfA1|lpfA1||1|||long_polar_fimbria_major_subunit_LpfA1 General stress response/Virulence gene +1212330120|ASF80766.1|1|1|LHR_yfdX2|LHR_yfdX2||1|||heat_resistance_protein_YfdX2 General stress response/Virulence gene +1212330125|ASF80771.1|1|1|LHR_hsp20B|LHR_hsp20B||1|||small_heat_shock_protein_sHSP20-GI General stress response/Virulence gene +121308153|CAM11313.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA General stress response/Virulence gene +121308155|CAM11314.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA General stress response/Virulence gene +121308173|CAM11323.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA General stress response/Virulence gene +121308175|CAM11324.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA General stress response/Virulence gene +1232061|AAA92621.1|1|1|f17g|f17g||1|||F17G_fimbrial_adhesin General stress response/Virulence gene +123229145|ABM73977.1|1|1|bont_B3|bont_B3||1|||botulinum_neurotoxin_subtype_B3 General stress response/Virulence gene +124106630|BAF45437.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +124106634|BAF45439.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +124106636|BAF45440.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +124106650|BAF45447.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +124106658|BAF45451.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +124106674|BAF45459.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +12518278|AAG58695.1|1|1|lpfA1|lpfA1||1|||long_polar_fimbria_major_subunit_LpfA1 General stress response/Virulence gene +1325136444|AUN52700.1|1|1|rmpD|rmpD||1|||mucoid_phenotype_synthesis_protein_RmpD General stress response/Virulence gene +13310561|AAK18385.1|1|1|sepA|sepA||1|||serine_protease_autotransporter_toxin_SepA General stress response/Virulence gene +13701623|BAB42916.1|1|1|seo|seo||1|||staphylococcal_enterotoxin_type_O General stress response/Virulence gene +13774144|BAB43874.1|1|1|cadD|cadD||1|CADMIUM|CADMIUM|cadmium_resistance_transporter_CadD Metal resistance gene +13811426|AAK40114.1|1|1|hreP|hreP||1|||subtilisin/kexin-like_serine_protease_HreP General stress response/Virulence gene +139002545|BAF52034.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +139002548|BAF52035.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +139002755|BAF52033.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +139003779|BAF52358.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +139003787|BAF52360.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +139003791|BAF52362.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +139003796|BAF52363.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +139003798|BAF52364.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +139003804|BAF52365.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +139003810|BAF52366.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +139003812|BAF52367.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +139003825|BAF52370.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +139003840|BAF52374.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +139003851|BAF52377.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +143192|AAA83978.1|1|1|merB1|merB1||1|ORGANOMERCURY|MERCURY|organomercurial_lyase_MerB1 Metal resistance gene +1437352259|SUK66413.1|1|1|sel30|sel30||1|||staphylococcal_enterotoxin_type_30 General stress response/Virulence gene +144867|AAA23263.1|1|1|bont_F6|bont_F6||1|||botulinum_neurotoxin_subtype_F6 General stress response/Virulence gene +144928|AAA72120.1|1|1|cpe|cpe||1|||enterotoxin_CPE General stress response/Virulence gene +14579333|AAK69210.1|1|1|yopD|yopD||1|||type_III_secretion_system_translocon_subunit_YopD gne +146150132|ABQ02454.1|1|1|rho-1|rho-1||1|RHO|INTIMIN|intimin_type_rho General stress response/Virulence gene +147830|AAA24632.1|1|1|stxA2f|stxA2f||1|STX2F|STX2|Shiga_toxin_Stx2f_subunit_A General stress response/Virulence gene +148750667|ABR09934.1|1|1|stxA2c|stxA2c||1|STX2C|STX2|Shiga_toxin_Stx2c_subunit_A General stress response/Virulence gene +150729|AAA25638.1|1|1|arsC_thio|arsC_thio||1|ARSENATE|ARSENIC|thioredoxin-dependent_arsenate_reductase Metal resistance gene +151858|AAA21095.1|1|1|arsB_R773|arsB_R773||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB Metal resistance gene +152520|AAA26403.1|1|1|klaC|klaC||1|TELLURIUM|TELLURIUM|tellurium_resistance_system_protein_klaC Metal resistance gene +15419713|AAK97135.1|1|1|csaB|csaB||1|||CS4_pilus_major_pilin_CsaB General stress response/Virulence gene +1545992|AAB42204.1|1|1|arsB_pYV|arsB_pYV||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB Metal resistance gene +15528433|CAC69250.1|1|1|MerP_Gneg|MerP_Gneg||1|MERCURY|MERCURY|mercury_resistance_system_periplasmic_binding_protein_MerP Metal resistance gene +155344|AAA27587.1|1|1|arsR_pSX267|arsR_pSX267||1|ARSENIC|ARSENIC|As(III)-sensing_metalloregulatory_transcriptional_repressor_ArsR Metal resistance gene +155345|AAA27588.1|1|1|arsB_pI258|arsB_pI258||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB Metal resistance gene +155346|AAA27589.1|1|1|arsC_thio|arsC_thio||1|ARSENATE|ARSENIC|thioredoxin-dependent_arsenate_reductase Metal resistance gene +157076729|ABV16438.1|1|1|eatA|eatA||1|||serine_protease_autotransporter_toxin_EatA General stress response/Virulence gene +15723940|AAL06387.1|1|1|espF|espF||1|||type_III_secretion_system_LEE_effector_EspF General stress response/Virulence gene +157688250|ABQ02442.1|1|1|ehxA|ehxA||1|||enterohemolysin_EhxA General stress response/Virulence gene +157688252|ABQ02443.1|1|1|ehxA|ehxA||1|||enterohemolysin_EhxA General stress response/Virulence gene +157688256|ABQ02445.1|1|1|ehxA|ehxA||1|||enterohemolysin_EhxA General stress response/Virulence gene +159132570|BAF91946.1|1|1|bont_B6|bont_B6||1|||botulinum_neurotoxin_subtype_B6 General stress response/Virulence gene +159885585|BAF92845.1|1|1|tir|tir||1|||type_III_secretion_system_LEE_translocated_intimin_receptor_Tir General stress response/Virulence gene +16417609|AAL18821.1|1|1|epeA|epeA||1|||serine_protease_autotransporter_EpeA General stress response/Virulence gene +164457634|BAF96541.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA General stress response/Virulence gene +1653492|BAA18405.1|1|1|acr3|acr3||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_Acr3 Metal resistance gene +166409298|BAG06667.1|1|1|ses|ses||1|||staphylococcal_enterotoxin_type_S General stress response/Virulence gene +168986470|BAG12001.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +169294941|EDS77074.1|1|1|c3bot2|c3bot2||1|||C3_toxin General stress response/Virulence gene +170518859|ACB17037.1|1|1|air|air||1|||inverse_autotransporter_adhesin_EaeX/Air General stress response/Virulence gene +170521958|ACB20136.1|1|1|iha|iha||1|||bifunctional_siderophore_receptor/adhesin_Iha General stress response/Virulence gene +1753231480|KAA9473339.1|1|1|arsB_Lm|arsB_Lm||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB Metal resistance gene +1764164|AAC44731.1|1|1|espC|espC||1|||serine_protease_autotransporter_toxin_EspC General stress response/Virulence gene +1796443971|QHF70768.1|1|1|fanC|fanC||1|||F5_fimbrial_major_subunit_protein_FanC General stress response/Virulence gene +18147064|BAB83020.1|1|1|stxA2g|stxA2g||1|STX2G|STX2|Shiga_toxin_Stx2g_subunit_A General stress response/Virulence gene +18147067|BAB83022.1|1|1|stxA1c|stxA1c||1|STX1C|STX1|Shiga_toxin_Stx1c_subunit_A General stress response/Virulence gene +18462537|AAL72309.1|1|1|sepA|sepA||1|||serine_protease_autotransporter_toxin_SepA General stress response/Virulence gene +188998312|ACD67884.1|1|1|cpd|cpd||1|||beta-channel_forming_cytolysin_CPD General stress response/Virulence gene +192758587|ACF05260.1|1|1|agg4A|agg4A||1|||aggregative_adherence_fimbria_4_major_subunit_Agg4A/HdaA General stress response/Virulence gene +195182801|BAG66379.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +195957566|ACG59676.1|1|1|espA|espA||1|||type_III_secretion_system_LEE_translocon_filament_protein_EspA General stress response/Virulence gene +196475602|ACG76368.1|1|1|arsP|arsP||1|ORGANOARSENIC|ARSENIC|organoarsenical_efflux_permease_ArsP Metal resistance gene +198040639|CAR56625.1|1|1|cblA_Bc|cblA_Bc||1|||cable_pilus_major_pilin_CblA General stress response/Virulence gene +215266044|CAS10463.1|1|1|espC|espC||1|||serine_protease_autotransporter_toxin_EspC General stress response/Virulence gene +215489834|CAS06720.1|1|1|gamma-2|gamma-2||1|THETA|INTIMIN|intimin_type_theta General stress response/Virulence gene +215489836|CAS06721.1|1|1|alpha-6|alpha-6||1|ZETA|INTIMIN|intimin_type_zeta General stress response/Virulence gene +215489840|CAS06723.1|1|1|alpha-6|alpha-6||1|ZETA|INTIMIN|intimin_type_zeta General stress response/Virulence gene +2159997|BAA20336.1|1|1|MerP_Gneg|MerP_Gneg||1|MERCURY|MERCURY|mercury_resistance_system_periplasmic_binding_protein_MerP Metal resistance gene +21636536|AAM70045.1|1|1|stxA2a|stxA2a||1|STX2A|STX2|Shiga_toxin_Stx2a_subunit_A General stress response/Virulence gene +218349792|CAQ87187.1|1|1|iroN|iroN||1|||siderophore_salmochelin_receptor_IroN General stress response/Virulence gene +218428762|CAR09703.2|1|1|ireA|ireA||1|||TonB-dependent_siderophore_receptor_IreA General stress response/Virulence gene +218434398|CAR15326.1|1|1|air|air||1|||inverse_autotransporter_adhesin_EaeX/Air General stress response/Virulence gene +22003413|AAM88668.1|1|1|cueA|cueA||1|COPPER|COPPER|copper_resistance_metal-translocating_P1-type_ATPase_CueA Metal resistance gene +221361465|CAX18635.1|1|1|espF|espF||1|||type_III_secretion_system_LEE_effector_EspF General stress response/Virulence gene +222708689|ACM67146.1|1|1|alpha-2|alpha-2||1|ALPHA|INTIMIN|intimin_type_alpha General stress response/Virulence gene +222708701|ACM67152.1|1|1|beta-2|beta-2||1|BETA|INTIMIN|intimin_type_beta General stress response/Virulence gene +222708703|ACM67153.1|1|1|lambda-2|lambda-2||1|LAMBDA|INTIMIN|intimin_type_lambda General stress response/Virulence gene +222708705|ACM67154.1|1|1|gamma-6|gamma-6||1|GAMMA|INTIMIN|intimin_type_gamma General stress response/Virulence gene +222708707|ACM67155.1|1|1|epsilon-8|epsilon-8||1|EPSILON|INTIMIN|intimin_type_epsilon General stress response/Virulence gene +222708709|ACM67156.1|1|1|epsilon-8|epsilon-8||1|EPSILON|INTIMIN|intimin_type_epsilon General stress response/Virulence gene +222708713|ACM67158.1|1|1|epsilon-6|epsilon-6||1|EPSILON|INTIMIN|intimin_type_epsilon General stress response/Virulence gene +222708719|ACM67161.1|1|1|beta-2|beta-2||1|BETA|INTIMIN|intimin_type_beta General stress response/Virulence gene +222708721|ACM67162.1|1|1|gamma-4|gamma-4||1|GAMMA|INTIMIN|intimin_type_gamma General stress response/Virulence gene +222708723|ACM67163.1|1|1|rho-3|rho-3||1|RHO|INTIMIN|intimin_type_rho General stress response/Virulence gene +222708727|ACM67165.1|1|1|gamma-3|gamma-3||1|GAMMA|INTIMIN|intimin_type_gamma General stress response/Virulence gene +222708731|ACM67167.1|1|1|epsilon-6|epsilon-6||1|EPSILON|INTIMIN|intimin_type_epsilon General stress response/Virulence gene +224612960|CAQ77251.1|1|1|hlyA-alpha|hlyA-alpha||1|||RTX_toxin_hemolysin_HlyA General stress response/Virulence gene +22652647|AAN03785.1|1|1|cnf1|cnf1||1|||cytotoxic_necrotizing_factor_CNF1 General stress response/Virulence gene +22652649|AAN03786.1|1|1|cnf1|cnf1||1|||cytotoxic_necrotizing_factor_CNF1 General stress response/Virulence gene +22759881|BAC10987.1|1|1|stxA1a|stxA1a||1|STX1A|STX1|Shiga_toxin_Stx1a_subunit_A General stress response/Virulence gene +229260169|ACQ51206.1|1|1|bont_B5|bont_B5||1|||botulinum_neurotoxin_subtype_B5 General stress response/Virulence gene +238549598|BAH65949.1|1|1|iroN|iroN||1|||siderophore_salmochelin_receptor_IroN General stress response/Virulence gene +24137633|BAC22064.1|1|1|bont_B2|bont_B2||1|||botulinum_neurotoxin_subtype_B2 General stress response/Virulence gene +24984576|AAN68576.1|1|1|mrdH|mrdH||1|COPPER/NICKEL|COPPER/NICKEL|Ni(II)/Co(II)_efflux_transporter_permease_subunit_MrdH Metal resistance gene +254939479|BAH86759.1|1|1|stxA2f|stxA2f||1|STX2F|STX2|Shiga_toxin_Stx2f_subunit_A General stress response/Virulence gene +2576413|AAB82330.1|1|1|aafA|aafA||1|||aggregative_adherence_fimbria_II_major_subunit_AafA General stress response/Virulence gene +257759657|BAI31154.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +257766024|BAI37519.1|1|1|espF|espF||1|||type_III_secretion_system_LEE_effector_EspF General stress response/Virulence gene +2588785|BAA23166.1|1|1|merG|merG||1|PHENYLMERCURY|MERCURY|phenylmercury_resistance_protein_MerG Metal resistance gene +25987939|AAN76093.1|1|1|iroN|iroN||1|||siderophore_salmochelin_receptor_IroN General stress response/Virulence gene +260213855|CBE05858.1|1|1|bin_CdtB|bin_CdtB||1|||ADP-ribosylating_binary_toxin_binding_subunit_CdtB General stress response/Virulence gene +260279121|BAI44131.1|1|1|agg5A|agg5A||1|||aggregative_adherence_fimbria_V_major_subunit_Agg5A General stress response/Virulence gene +26107524|AAN79707.1|1|1|iroN|iroN||1|||siderophore_salmochelin_receptor_IroN General stress response/Virulence gene +26111414|AAN83596.1|1|1|ireA|ireA||1|||TonB-dependent_siderophore_receptor_IreA General stress response/Virulence gene +270269184|ACZ66176.1|1|1|sel31|sel31||1|||staphylococcal_enterotoxin_type_31 General stress response/Virulence gene +2765304|CAA73668.1|1|1|lukD|lukD||1|||bi-component_leukocidin_LukED_subunit_D General stress response/Virulence gene +281603818|ADA76801.1|1|1|sepA|sepA||1|||serine_protease_autotransporter_toxin_SepA General stress response/Virulence gene +282160579|ADA79569.1|1|1|bont_F4|bont_F4||1|||botulinum_neurotoxin_subtype_F4 General stress response/Virulence gene +282948281|CBG87859.1|1|1|nleB|nleB||1|||type_III_secretion_system_effector_arginine_glycosyltransferase_NleB General stress response/Virulence gene +282950079|CBG89712.1|1|1|espA|espA||1|||type_III_secretion_system_LEE_translocon_filament_protein_EspA General stress response/Virulence gene +284924615|CBG27798.1|1|1|aafD|aafD||1|||aggregative_adherence_fimbria_II_chaperone_AafD General stress response/Virulence gene +2853151|CAA11820.1|1|1|cfsA|cfsA||1|||CS5_fimbrial_major_subunit_CsfA General stress response/Virulence gene +2865302|AAC38394.1|1|1|espA|espA||1|||type_III_secretion_system_LEE_translocon_filament_protein_EspA General stress response/Virulence gene +2865304|AAC38396.1|1|1|espB|espB||1|||type_III_secretion_system_LEE_translocon_pore-forming_subunit_EspB General stress response/Virulence gene +2865308|AAC38400.1|1|1|espF|espF||1|||type_III_secretion_system_LEE_effector_EspF General stress response/Virulence gene +2879920|BAA24823.1|1|1|arsB_pKW301|arsB_pKW301||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB Metal resistance gene +290432|AAA23737.1|1|1|f17a|f17a||1|||F17A_fimbrial_adhesin General stress response/Virulence gene +2947088|AAC38232.1|1|1|MerP_Gneg|MerP_Gneg||1|MERCURY|MERCURY|mercury_resistance_system_periplasmic_binding_protein_MerP Metal resistance gene +295060061|ADF64798.1|1|1|ncrC|ncrC||1|COPPER/NICKEL|COPPER/NICKEL|Ni(II)/Co(II)_efflux_transporter_permease_subunit_NcrC General stress response/Virulence gene +297592330|ADI47068.1|1|1|iha|iha||1|||bifunctional_siderophore_receptor/adhesin_Iha General stress response/Virulence gene +29895498|AAP08785.1|1|1|nheC|nheC||1|||non-hemolytic_enterotoxin_NHE_subunit_C General stress response/Virulence gene +29896770|AAP10048.1|1|1|hblC|hblC||1|||hemolytic_enterotoxin_HBL_lytic_component_L2 General stress response/Virulence gene +30043229|AAP18950.1|1|1|lpfA-O113|lpfA-O113||1|||long_polar_fimbria_major_subunit_LpfA-O113 General stress response/Virulence gene +302333605|ADL23798.1|1|1|scn|scn||1|||complement_inhibitor_SCIN-A General stress response/Virulence gene +3095184|AAC26634.1|1|1|pet|pet||1|||serine_protease_autotransporter_toxin_Pet General stress response/Virulence gene +3115184|CAA73506.1|1|1|espA|espA||1|||type_III_secretion_system_LEE_translocon_filament_protein_EspA General stress response/Virulence gene +325048858|BAJ79293.1|1|1|aafA|aafA||1|||aggregative_adherence_fimbria_II_major_subunit_AafA General stress response/Virulence gene +325048862|BAJ79295.1|1|1|aafA|aafA||1|||aggregative_adherence_fimbria_II_major_subunit_AafA General stress response/Virulence gene +332312684|EGJ25779.1|1|1|arsD_like|arsD_like||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_metallochaperone_ArsD-related_protein Metal resistance gene +332312690|EGJ25785.1|1|1|arsB_Lm|arsB_Lm||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB Metal resistance gene +332312691|EGJ25786.1|1|1|arsB_Lm|arsB_Lm||1|ARSENITE|ARSENIC|arsenite_efflux_transporter_membrane_subunit_ArsB Metal resistance gene +3337077|BAA31836.1|1|1|espP|espP||1|||serine_protease_autotransporter_EspP General stress response/Virulence gene +33469479|AAQ19775.1|1|1|csdA|csdA||1|||CS19_fimbria_major_subunit_CsdA General stress response/Virulence gene +3372542|AAC78590.1|1|1|sej|sej||1|||staphylococcal_enterotoxin_type_J General stress response/Virulence gene +3417251|CAA12346.1|1|1|espA|espA||1|||type_III_secretion_system_LEE_translocon_filament_protein_EspA General stress response/Virulence gene +3513658|AAC33908.1|1|1|merC|merC||1|ORGANOMERCURY|MERCURY|organomercurial_transporter_MerC Metal resistance gene +354855824|EHF16297.1|1|1|aggB|aggB||1|||aggregative_adherence_fimbria_I_minor_subunit_AggB General stress response/Virulence gene +354855825|EHF16298.1|1|1|aggA|aggA||1|||aggregative_adherence_fimbria_I_major_subunit_AggA General stress response/Virulence gene +356484840|AET11941.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA General stress response/Virulence gene +356484899|AET11995.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA General stress response/Virulence gene +356484913|AET12008.1|1|1|nleA|nleA||1|||type_III_secretion_system_effector_NleA General stress response/Virulence gene +371976459|EHO93748.1|1|1|aur|aur||1|||zinc_metalloproteinase_aureolysin Metal resistance gene +374343131|BAL46940.1|1|1|alpha|alpha||1|ALPHA|INTIMIN|intimin_type_alpha General stress response/Virulence gene +374343133|BAL46941.1|1|1|epsilon-2|epsilon-2||1|EPSILON|INTIMIN|intimin_type_epsilon General stress response/Virulence gene +374343515|BAL47132.1|1|1|epsilon-4|epsilon-4||1|EPSILON|INTIMIN|intimin_type_epsilon General stress response/Virulence gene +374343603|BAL47176.1|1|1|rho-2|rho-2||1|YPSILON|INTIMIN|intimin_type_ypsilon General stress response/Virulence gene +374343609|BAL47179.1|1|1|epsilon-2|epsilon-2||1|EPSILON|INTIMIN|intimin_type_epsilon General stress response/Virulence gene +374343613|BAL47181.1|1|1|alpha|alpha||1|ALPHA|INTIMIN|intimin_type_alpha General stress response/Virulence gene +380005626|AFD29291.1|1|1|aalE|aalE||1|||CS23_fimbrial_major_subunit_AalE General stress response/Virulence gene +380248692|CBW53086.1|1|1|iha|iha||1|||bifunctional_siderophore_receptor/adhesin_Iha General stress response/Virulence gene +38194523|AAR13270.1|1|1|iroN|iroN||1|||siderophore_salmochelin_receptor_IroN General stress response/Virulence gene +389595513|AFK88558.1|1|1|sat_auto|sat_auto||1|||serine_protease_autotransporter_toxin_Sat General stress response/Virulence gene +390980685|AFM31243.1|1|1|tccP2|tccP2||1|||Tir-cytoskeleton_coupling_protein_TccP2 General stress response/Virulence gene +394333411|AFN27480.1|1|1|bonA|bonA||1|||bongkrekic_acid_type_I_polyketide_synthase_BonA General stress response/Virulence gene +395406670|AFN61309.1|1|1|bont_B8|bont_B8||1|||botulinum_neurotoxin_subtype_B8 General stress response/Virulence gene +403299|CAA50007.1|1|1|cnf1|cnf1||1|||cytotoxic_necrotizing_factor_CNF1 General stress response/Virulence gene +406780449|AFS59871.1|1|1|sepA|sepA||1|||serine_protease_autotransporter_toxin_SepA General stress response/Virulence gene +414655|CAA51960.1|1|1|ibp|ibp||1|||ADP-ribosylating_binary_toxin_iota_binding_subunit_Ib General stress response/Virulence gene +42529|CAA43558.1|1|1|papG-III|papG-III||1|||P_fimbria_tip_G-adhesin_PapG-III General stress response/Virulence gene +4335912|AAD17513.1|1|1|f17g|f17g||1|||F17G_fimbrial_adhesin General stress response/Virulence gene +4335914|AAD17514.1|1|1|f17g|f17g||1|||F17G_fimbrial_adhesin General stress response/Virulence gene +46369880|AAS89773.1|1|1|cosA|cosA||1|||PCF071_fimbrial_major_subunit_CosA General stress response/Virulence gene +46369885|AAS89777.1|1|1|csbA|csbA||1|||CS17_fimbrial_major_subunit_CsbA General stress response/Virulence gene +46949087|AAT07441.1|1|1|cooA|cooA||1|||CS1_fimbrial_major_subunit_CooA General stress response/Virulence gene +472420551|EMS03085.1|1|1|aggA|aggA||1|||aggregative_adherence_fimbria_I_major_subunit_AggA General stress response/Virulence gene +47600653|CAE55775.1|1|1|sat_auto|sat_auto||1|||serine_protease_autotransporter_toxin_Sat General stress response/Virulence gene +50956507|AAT90756.1|1|1|tcbA|tcbA||1|||Tc_family_toxin_subunit_TcbA General stress response/Virulence gene +51949833|AAU14850.1|1|1|cpb2|cpb2||1|||beta-2_toxin_CPB2 General stress response/Virulence gene +52854784|AAU88264.1|1|1|cdtB|cdtB||1|||cytolethal_distending_toxin_nuclease_subunit_CdtB General stress response/Virulence gene +531398|AAA57452.1|1|1|aggC|aggC||1|||aggregative_adherence_fimbria_I_usher_protein_AggC General stress response/Virulence gene +534988|CAA85366.1|1|1|stxA1a|stxA1a||1|STX1A|STX1|Shiga_toxin_Stx1a_subunit_A General stress response/Virulence gene +535089|CAA85370.1|1|1|stxA1c|stxA1c||1|STX1C|STX1|Shiga_toxin_Stx1c_subunit_A General stress response/Virulence gene +535625057|EQX61716.1|1|1|aggA|aggA||1|||aggregative_adherence_fimbria_I_major_subunit_AggA General stress response/Virulence gene +53850832|AAU95470.1|1|1|nleB|nleB||1|||type_III_secretion_system_effector_arginine_glycosyltransferase_NleB General stress response/Virulence gene +54311626|CAG17541.1|1|1|espA|espA||1|||type_III_secretion_system_LEE_translocon_filament_protein_EspA General stress response/Virulence gene +545581792|AGW33874.1|1|1|lukS-PV|lukS-PV||1|||Panton-Valentine_bi-component_leukocidin_subunit_S General stress response/Virulence gene +550423|CAA57277.1|1|1|hlgC|hlgC||1|||bi-component_gamma-hemolysin_HlgCB_subunit_C General stress response/Virulence gene +57434439|CAI43856.1|1|1|espF|espF||1|||type_III_secretion_system_LEE_effector_EspF General stress response/Virulence gene +586640776|AHJ80155.1|1|1|stxA1e|stxA1e||1|STX1E|STX1|Shiga_toxin_Stx1e_subunit_A General stress response/Virulence gene +61652455|AAX47730.1|1|1|tir|tir||1|||type_III_secretion_system_LEE_translocated_intimin_receptor_Tir General stress response/Virulence gene +619130|CAA58527.1|1|1|pcoC|pcoC||1|COPPER|COPPER|copper_resistance_system_metallochaperone_PcoC Metal resistance gene +62085706|AAX63245.1|1|1|fedF|fedF||1|||F18_fimbrial_adhesin_subunit_FedF General stress response/Virulence gene +62085734|AAX63259.1|1|1|fedF|fedF||1|||F18_fimbrial_adhesin_subunit_FedF General stress response/Virulence gene +6470209|AAF13663.1|1|1|capB|capB||1|||capsule_biosynthesis_protein_CapB General stress response/Virulence gene +663201|CAA54115.1|1|1|nfaE|nfaE||1|||Dr_family_non-fimbrial_adhesin_I_chaperone_NfaE General stress response/Virulence gene +6687466|CAB64953.1|1|1|stxA2f|stxA2f||1|STX2F|STX2|Shiga_toxin_Stx2f_subunit_A General stress response/Virulence gene +674651835|CDY80020.1|1|1|LHR_hsp20A|LHR_hsp20A||1|||small_heat_shock_protein_sHSP20 General stress response/Virulence gene +73476899|AAZ76514.1|1|1|espP|espP||1|||serine_protease_autotransporter_EspP General stress response/Virulence gene +755408432|AJJ21446.1|1|1|yopM|yopM||1|||type_III_secretion_system_effector_YopM General stress response/Virulence gene +760237696|AJP10335.1|1|1|tcdR|tcdR||1|||glycosylating_toxin_sigma_factor_TcdR General stress response/Virulence gene +760237700|AJP10339.1|1|1|tcdA|tcdA||1|||glycosylating_toxin_TcdA General stress response/Virulence gene +812239686|CNC65351.1|1|1|yadA|yadA||1|||trimeric_autotransporter_adhesin_YadA General stress response/Virulence gene +81240477|ABB61187.1|1|1|iroN|iroN||1|||siderophore_salmochelin_receptor_IroN General stress response/Virulence gene +817048098|AKF16652.1|1|1|netF|netF||1|||necrotizing_enteritis_toxin_NetF General stress response/Virulence gene +821787072|KLB41245.1|1|1|copL|copL||1|COPPER|COPPER|transcriptional_regulator_CopL Metal resistance gene +83308567|CAI79539.1|1|1|eatA|eatA||1|||serine_protease_autotransporter_toxin_EatA General stress response/Virulence gene +844574223|AKN09807.1|1|1|yopJ_gen|yopJ_gen||1|||YopJ/YopP_family_T3SS_effector_serine/threonine_acetyltransferase General stress response/Virulence gene +85676543|BAE77793.1|1|1|arsR_K-12|arsR_K-12||1|ARSENIC|ARSENIC|As(III)-sensing_metalloregulatory_transcriptional_repressor_ArsR Metal resistance gene +86753172|ABD14714.1|1|1|cesD|cesD||1|||cereulide_export_ABC_transporter_permease_subunit_CesD General stress response/Virulence gene +886953|CAA88252.1|1|1|sepA|sepA||1|||serine_protease_autotransporter_toxin_SepA General stress response/Virulence gene +91075443|ABE10324.1|1|1|cnf1|cnf1||1|||cytotoxic_necrotizing_factor_CNF1 General stress response/Virulence gene +94480755|CAK02719.1|1|1|cnf1|cnf1||1|||cytotoxic_necrotizing_factor_CNF1 General stress response/Virulence gene +991872253|AMG40538.1|1|1|sel|sel||1|||staphylococcal_enterotoxin_type_L General stress response/Virulence gene +997194215|CXT91862.1|1|1|sel33|sel33||1|||staphylococcal_enterotoxin_type_33 General stress response/Virulence gene diff --git a/argnorm/data/manual_curation/resfinder_curation.tsv b/argnorm/data/manual_curation/resfinder_curation.tsv index ad9c9cd..9629319 100644 --- a/argnorm/data/manual_curation/resfinder_curation.tsv +++ b/argnorm/data/manual_curation/resfinder_curation.tsv @@ -1,50 +1,50 @@ -Original ID Gene Name in CARD ARO Origin Position in Cluster Description -VanHAX_1_FJ866609 glycopeptide resistance gene cluster VanA 3000236 https://www.ncbi.nlm.nih.gov/nuccore/M97297.1?report=fasta 6018-8624 "Part of VanA cluster (ARO:3000236). Contains: ARO:3002942, ARO:3000010, and ARO:3002949 " -VanHAX_2_M97297 glycopeptide resistance gene cluster VanA 3000236 https://www.ncbi.nlm.nih.gov/nuccore/FJ866609?report=fasta 3762-6368 "Part of VanA cluster (ARO:3000236). Contains: ARO:3002942 and ARO:3002949. The vanA gene (ARO:3002949) is modified, 1 G substituded with 1 T " -VanHMX_1_FJ349556 glycopeptide resistance gene cluster VanM 3000256 https://www.ncbi.nlm.nih.gov/nuccore/FJ349556.1?report=fasta 3884-6502 "Part of VanM cluster (ARO:3000256). Contains: ARO: ARO:3002947, ARO:3002911, and ARO:3002953" -vanM_1_FJ349556 glycopeptide resistance gene cluster VanM 3000256 https://www.ncbi.nlm.nih.gov/nuccore/FJ349556.1?report=fasta Whole Cluster "full vanM cluster, ARO:3000256" -VanC1XY_1_AF162694 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/AF162694.1?report=fasta 1411-3011 "Part of VanC cluster (ARO:3000246). Contains: ARO:3000368, ARO:3002966" -VanC1XY_2_DQ022190 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/DQ022190.1?report=fasta 205-1805 Part of VanC cluster (ARO:3000246). -VanC2XY_1_EU151754 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151754.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) -VanHAX_PT_1_DQ018710 glycopeptide resistance gene cluster VanA 3000236 https://www.ncbi.nlm.nih.gov/nuccore/DQ018710.1 5109-7715 Part of VanA cluster (ARO:3000236) -VanHAX_PA_1_DQ018711 glycopeptide resistance gene cluster VanA 3000236 https://www.ncbi.nlm.nih.gov/nuccore/DQ018711.1?report=fasta 3168-5750 Part of VanA cluster (ARO:3000236) -VanHAX_PT_2_AY926880 glycopeptide resistance gene cluster VanA 3000236 https://www.ncbi.nlm.nih.gov/nuccore/AY926880.2?report=fasta 2771-5377 Part of VanA cluster (ARO:3000236) -dldHA2X_1_AL939117 https://www.ncbi.nlm.nih.gov/nuccore/AL939117.1 53343-56013 Gene not in CARD -VanHBX_1_AF192329 glycopeptide resistance gene cluster VanB 3000238 https://www.ncbi.nlm.nih.gov/nuccore/AF192329 27871-30477 Part of VanB cluster (ARO:3000238) -VanHBX_2_U35369 glycopeptide resistance gene cluster VanB 3000238 https://www.ncbi.nlm.nih.gov/nuccore/U35369.1?report=fasta 4007-6613 "Part of VanB cluster (ARO:3000238). Contains ARO:3002943, ARO:3002950" -VanC4XY_1_EU151752 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151752.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) -VanC4XY_2_EU151753 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151753.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) -VanC2XY_2_EU151755 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151755.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) -VanC4XY_3_EU151756 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151756.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) -VanC2XY_3_EU151757 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151757.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) -VanC2XY_4_EU151758 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151758.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) -VanC3XY_2_EU151759 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151759.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) -VanC2XY_5_EU151760 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151760.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) -VanHDX_6_DQ172830 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/DQ172830.1?report=fasta 3019-5628 Part of VanD cluster (ARO:3000253) -VanHDX_7_AB242319 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/AB242319.1?report=fasta 3045-5654 Part of VanD cluster (ARO:3000253) -VanHDX_3_AF175293 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/AF175293.1?report=fasta 3115-5724 Part of VanD cluster (ARO:3000253) -VanHDX_4_AY082011 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/AY082011.1?report=fasta 4937-7546 "Part of VanD cluster (ARO:3000253). Contains ARO:3002944, ARO:3000005, ARO:3003070" -VanHDX_5_AY489045 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/AY489045.1?report=fasta 3046-5655 Part of VanD cluster (ARO:3000253) -VanHDX_1_AF130997 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/AF130997.1?report=fasta 3122-5728 Part of VanD cluster (ARO:3000253) -VanHDX_2_EU999036 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/EU999036.1?report=fasta 3044-5653 Part of VanD cluster (ARO:3000253) -VanHFX_1_AF155139 glycopeptide resistance gene cluster VanF 3000255 https://www.ncbi.nlm.nih.gov/nuccore/AF155139.2?report=fasta 4979-7648 "Part of VanF cluster (ARO:3000255). Contains ARO:3002945, ARO:3002908, ARO:3002952" -VanEXY_1_FJ872411 glycopeptide resistance gene cluster VanE 3000259 https://www.ncbi.nlm.nih.gov/nuccore/FJ872411.1?report=fasta 39736-41347 "Part of VanE cluster (ARO:3000259). Contains ARO:3002907, ARO:3002967" -VanGXY_1_AY271782 glycopeptide resistance gene cluster VanG 3000257 https://www.ncbi.nlm.nih.gov/nuccore/AY271782.1?report=fasta 21049-22859 "Part of VanG cluster (ARO:3000257). Contains ARO:3002909, ARO:3003069" -VanG2XY_1_FJ872410 glycopeptide resistance gene cluster VanG 3000257 https://www.ncbi.nlm.nih.gov/nuccore/FJ872410 39328-41138 Part of VanG cluster (ARO:3000257) -VanLXY_1_EU250284 glycopeptide resistance gene cluster VanL 3000260 https://www.ncbi.nlm.nih.gov/nuccore/EU250284.1?report=fasta 955-2578 "Part of VanL cluster (ARO:3000260). Contains ARO:3002910, ARO:3002968" -VanNXY_1_JF802084 glycopeptide resistance gene cluster VanN 3002917 https://www.ncbi.nlm.nih.gov/nuccore/JF802084.2?report=fasta 560-2165 "Part of VanN cluster (ARO:3002917). Contains ARO:3002912, ARO:3002969" -VanHOX_1_KF478993 glycopeptide resistance gene cluster VanO 3002918 https://www.ncbi.nlm.nih.gov/nuccore/KF478993.1?report=fasta 491-3185 "Part of VanO cluster (ARO:3002918). Contains ARO:3002948, ARO:3002954" -vanXmurFvanWI_1_CP001336 glycopeptide resistance gene cluster VanI 3003722 https://www.ncbi.nlm.nih.gov/nuccore/CP001336.1?report=fasta 1776504-1780580 Part of VanI cluster (ARO:300372). Origin has both VanI cluster and VanB cluster. Contains ARO:3003725 -vanXmurFvanKWI_1_NZAGAF01000127 glycopeptide resistance gene cluster VanI 3003722 https://www.ncbi.nlm.nih.gov/nuccore/NZ_AGAF01000127.1?report=fasta 3324-8562 Part of VanI cluster (ARO:300372). CDS in origin is in reverse complement form. -vanXmurFvanKWI_2_AP008230 glycopeptide resistance gene cluster VanI 3003722 https://www.ncbi.nlm.nih.gov/nuccore/AP008230.1?report=fasta 4202889-4208186 Part of VanI cluster (ARO:300372). Contains ARO:3003727 -mph(D)_1_AB048591 macrolide phosphotransferase (MPH) 3000333 https://www.ncbi.nlm.nih.gov/nuccore/AB048591.1?report=fasta 4-840 Gene not in CARD. Parent ARO used. -aac(3)-Xa_1_AB028210 AAC(3)-Xa 3002544 Reverse complement in resfinder db. -blaBKC-1_1_KP689347 BKC-1 3004757 Reverse complement in resfinder db. -mph(A)_1_D16251 mphA 3000316 Reverse complement in resfinder db. -qepA1_1_AB263754 QepA2 3004103 Reverse complement in resfinder db. -tet(43)_1_GQ244501 tet(43) 3000573 Reverse complement in resfinder db. -blaSPG-1_1_KP109680 SPG-1 3003720 -blaBIM-1_1_CP016446 BlaB 3004201 -grdA_1_QJX10702 -aac(3)-I_1_AJ877225 AAC(3)-I 3007384 -EstDL136_1_JN242251 +Original ID Gene Name in CARD ARO Origin Position in Cluster Description +VanHAX_1_FJ866609 glycopeptide resistance gene cluster VanA 3000236 https://www.ncbi.nlm.nih.gov/nuccore/M97297.1?report=fasta 6018-8624 "Part of VanA cluster (ARO:3000236). Contains: ARO:3002942, ARO:3000010, and ARO:3002949 " +VanHAX_2_M97297 glycopeptide resistance gene cluster VanA 3000236 https://www.ncbi.nlm.nih.gov/nuccore/FJ866609?report=fasta 3762-6368 "Part of VanA cluster (ARO:3000236). Contains: ARO:3002942 and ARO:3002949. The vanA gene (ARO:3002949) is modified, 1 G substituded with 1 T " +VanHMX_1_FJ349556 glycopeptide resistance gene cluster VanM 3000256 https://www.ncbi.nlm.nih.gov/nuccore/FJ349556.1?report=fasta 3884-6502 "Part of VanM cluster (ARO:3000256). Contains: ARO: ARO:3002947, ARO:3002911, and ARO:3002953" +vanM_1_FJ349556 glycopeptide resistance gene cluster VanM 3000256 https://www.ncbi.nlm.nih.gov/nuccore/FJ349556.1?report=fasta Whole Cluster "full vanM cluster, ARO:3000256" +VanC1XY_1_AF162694 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/AF162694.1?report=fasta 1411-3011 "Part of VanC cluster (ARO:3000246). Contains: ARO:3000368, ARO:3002966" +VanC1XY_2_DQ022190 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/DQ022190.1?report=fasta 205-1805 Part of VanC cluster (ARO:3000246). +VanC2XY_1_EU151754 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151754.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) +VanHAX_PT_1_DQ018710 glycopeptide resistance gene cluster VanA 3000236 https://www.ncbi.nlm.nih.gov/nuccore/DQ018710.1 5109-7715 Part of VanA cluster (ARO:3000236) +VanHAX_PA_1_DQ018711 glycopeptide resistance gene cluster VanA 3000236 https://www.ncbi.nlm.nih.gov/nuccore/DQ018711.1?report=fasta 3168-5750 Part of VanA cluster (ARO:3000236) +VanHAX_PT_2_AY926880 glycopeptide resistance gene cluster VanA 3000236 https://www.ncbi.nlm.nih.gov/nuccore/AY926880.2?report=fasta 2771-5377 Part of VanA cluster (ARO:3000236) +dldHA2X_1_AL939117 D-Ala-D-Ala ligase 3003970 https://www.ncbi.nlm.nih.gov/nuccore/AL939117.1 53343-56013 +VanHBX_1_AF192329 glycopeptide resistance gene cluster VanB 3000238 https://www.ncbi.nlm.nih.gov/nuccore/AF192329 27871-30477 Part of VanB cluster (ARO:3000238) +VanHBX_2_U35369 glycopeptide resistance gene cluster VanB 3000238 https://www.ncbi.nlm.nih.gov/nuccore/U35369.1?report=fasta 4007-6613 "Part of VanB cluster (ARO:3000238). Contains ARO:3002943, ARO:3002950" +VanC4XY_1_EU151752 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151752.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) +VanC4XY_2_EU151753 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151753.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) +VanC2XY_2_EU151755 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151755.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) +VanC4XY_3_EU151756 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151756.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) +VanC2XY_3_EU151757 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151757.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) +VanC2XY_4_EU151758 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151758.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) +VanC3XY_2_EU151759 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151759.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) +VanC2XY_5_EU151760 glycopeptide resistance gene cluster VanC 3000246 https://www.ncbi.nlm.nih.gov/nuccore/EU151760.1?report=fasta 29-1650 Part of VanC cluster (ARO:3000246) +VanHDX_6_DQ172830 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/DQ172830.1?report=fasta 3019-5628 Part of VanD cluster (ARO:3000253) +VanHDX_7_AB242319 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/AB242319.1?report=fasta 3045-5654 Part of VanD cluster (ARO:3000253) +VanHDX_3_AF175293 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/AF175293.1?report=fasta 3115-5724 Part of VanD cluster (ARO:3000253) +VanHDX_4_AY082011 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/AY082011.1?report=fasta 4937-7546 "Part of VanD cluster (ARO:3000253). Contains ARO:3002944, ARO:3000005, ARO:3003070" +VanHDX_5_AY489045 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/AY489045.1?report=fasta 3046-5655 Part of VanD cluster (ARO:3000253) +VanHDX_1_AF130997 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/AF130997.1?report=fasta 3122-5728 Part of VanD cluster (ARO:3000253) +VanHDX_2_EU999036 glycopeptide resistance gene cluster VanD 3000253 https://www.ncbi.nlm.nih.gov/nuccore/EU999036.1?report=fasta 3044-5653 Part of VanD cluster (ARO:3000253) +VanHFX_1_AF155139 glycopeptide resistance gene cluster VanF 3000255 https://www.ncbi.nlm.nih.gov/nuccore/AF155139.2?report=fasta 4979-7648 "Part of VanF cluster (ARO:3000255). Contains ARO:3002945, ARO:3002908, ARO:3002952" +VanEXY_1_FJ872411 glycopeptide resistance gene cluster VanE 3000259 https://www.ncbi.nlm.nih.gov/nuccore/FJ872411.1?report=fasta 39736-41347 "Part of VanE cluster (ARO:3000259). Contains ARO:3002907, ARO:3002967" +VanGXY_1_AY271782 glycopeptide resistance gene cluster VanG 3000257 https://www.ncbi.nlm.nih.gov/nuccore/AY271782.1?report=fasta 21049-22859 "Part of VanG cluster (ARO:3000257). Contains ARO:3002909, ARO:3003069" +VanG2XY_1_FJ872410 glycopeptide resistance gene cluster VanG 3000257 https://www.ncbi.nlm.nih.gov/nuccore/FJ872410 39328-41138 Part of VanG cluster (ARO:3000257) +VanLXY_1_EU250284 glycopeptide resistance gene cluster VanL 3000260 https://www.ncbi.nlm.nih.gov/nuccore/EU250284.1?report=fasta 955-2578 "Part of VanL cluster (ARO:3000260). Contains ARO:3002910, ARO:3002968" +VanNXY_1_JF802084 glycopeptide resistance gene cluster VanN 3002917 https://www.ncbi.nlm.nih.gov/nuccore/JF802084.2?report=fasta 560-2165 "Part of VanN cluster (ARO:3002917). Contains ARO:3002912, ARO:3002969" +VanHOX_1_KF478993 glycopeptide resistance gene cluster VanO 3002918 https://www.ncbi.nlm.nih.gov/nuccore/KF478993.1?report=fasta 491-3185 "Part of VanO cluster (ARO:3002918). Contains ARO:3002948, ARO:3002954" +vanXmurFvanWI_1_CP001336 glycopeptide resistance gene cluster VanI 3003722 https://www.ncbi.nlm.nih.gov/nuccore/CP001336.1?report=fasta 1776504-1780580 Part of VanI cluster (ARO:300372). Origin has both VanI cluster and VanB cluster. Contains ARO:3003725 +vanXmurFvanKWI_1_NZAGAF01000127 glycopeptide resistance gene cluster VanI 3003722 https://www.ncbi.nlm.nih.gov/nuccore/NZ_AGAF01000127.1?report=fasta 3324-8562 Part of VanI cluster (ARO:300372). CDS in origin is in reverse complement form. +vanXmurFvanKWI_2_AP008230 glycopeptide resistance gene cluster VanI 3003722 https://www.ncbi.nlm.nih.gov/nuccore/AP008230.1?report=fasta 4202889-4208186 Part of VanI cluster (ARO:300372). Contains ARO:3003727 +mph(D)_1_AB048591 macrolide phosphotransferase (MPH) 3000333 https://www.ncbi.nlm.nih.gov/nuccore/AB048591.1?report=fasta 4-840 Gene not in CARD. Parent ARO used. +aac(3)-Xa_1_AB028210 AAC(3)-Xa 3002544 Reverse complement in resfinder db. +blaBKC-1_1_KP689347 BKC-1 3004757 Reverse complement in resfinder db. +mph(A)_1_D16251 mphA 3000316 Reverse complement in resfinder db. +qepA1_1_AB263754 QepA2 3004103 Reverse complement in resfinder db. +tet(43)_1_GQ244501 tet(43) 3000573 Reverse complement in resfinder db. +blaSPG-1_1_KP109680 SPG-1 3003720 +blaBIM-1_1_CP016446 BlaB 3004201 +grdA_1_QJX10702 3007382 Parent ARO mapping +aac(3)-I_1_AJ877225 AAC(3)-I 3007384 +EstDL136_1_JN242251 3000387 Parent ARO mapping diff --git a/argnorm/data/manual_curation/resfinderfg_curation.tsv b/argnorm/data/manual_curation/resfinderfg_curation.tsv index 5369938..2aa446c 100644 --- a/argnorm/data/manual_curation/resfinderfg_curation.tsv +++ b/argnorm/data/manual_curation/resfinderfg_curation.tsv @@ -1,2 +1,2 @@ Original ID ARO Gene Name in CARD -UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase|KF629588.1|pediatric_fecal_sample|CYC +UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase|KF629588.1|pediatric_fecal_sample|CYC 3003970 D-Ala-D-Ala ligase diff --git a/argnorm/data/manual_curation/sarg_curation.tsv b/argnorm/data/manual_curation/sarg_curation.tsv index cd3e7e9..953cd02 100644 --- a/argnorm/data/manual_curation/sarg_curation.tsv +++ b/argnorm/data/manual_curation/sarg_curation.tsv @@ -1,3 +1,3 @@ Original ID ARO Gene Name in CARD gb|AAG57600.1|ARO:3000318|mphB 3000318 mphB -AM180355.1.gene2260.p01 +AM180355.1.gene2260.p01 3000250 ErmC diff --git a/outputs/hamronized/abricate.argannot.tsv b/outputs/hamronized/abricate.argannot.tsv index fdf4ed2..617b202 100644 --- a/outputs/hamronized/abricate.argannot.tsv +++ b/outputs/hamronized/abricate.argannot.tsv @@ -164,7 +164,7 @@ GMGC10.018_598_687.YYAR GMGC10.95nr_block_0010 (AGly)satA (AGly)satA argannot 20 GMGC10.018_660_446.FOLA GMGC10.95nr_block_0010 (Tmt)dfrI (Tmt)dfrI argannot 2021-Mar-27 NG_047757:101-676 abricate abricate 1.0.1 100.0 1 498 + 86.46 ARO:3004645 ARO:3000188 ARO:3000171 GMGC10.019_134_686.UNKNOWN GMGC10.95nr_block_0010 (AGly)AAC(6')-Isa (AGly)AAC(6')-Isa argannot 2021-Mar-27 NG_047311:101-574 abricate abricate 1.0.1 81.73 109 522 + 86.92 ARO:3002563 ARO:0000007,ARO:0000013,ARO:0000035,ARO:0000038,ARO:0000052,ARO:3007378,ARO:3007379 ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016 GMGC10.020_078_505.YYAR GMGC10.95nr_block_0010 (AGly)satA (AGly)satA argannot 2021-Mar-27 NG_064662:101_622 abricate abricate 1.0.1 80.27 1 522 + 100.0 ARO:3002897 ARO:0000012 ARO:3000034 -GMGC10.020_791_682.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 85.14 1 518 + 96.46 +GMGC10.020_791_682.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 85.14 1 518 + 96.46 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.020_836_424.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 80.65 2 522 + 97.93 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.022_233_330.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 82.38 1 522 + 98.31 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.024_353_370.YYAR GMGC10.95nr_block_0010 (AGly)satA (AGly)satA argannot 2021-Mar-27 NG_064662:101_622 abricate abricate 1.0.1 87.17 1 522 + 100.0 ARO:3002897 ARO:0000012 ARO:3000034 @@ -172,17 +172,17 @@ GMGC10.025_332_229.YYAR GMGC10.95nr_block_0010 (AGly)satA (AGly)satA argannot 20 GMGC10.025_390_872.YYAR GMGC10.95nr_block_0010 (AGly)satA (AGly)satA argannot 2021-Mar-27 NG_064662:101_622 abricate abricate 1.0.1 95.78 1 522 + 100.0 ARO:3002897 ARO:0000012 ARO:3000034 GMGC10.025_631_197.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 83.4 2 507 + 95.29 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.025_670_095.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 81.19 2 522 + 98.12 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 -GMGC10.025_709_579.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 85.91 1 517 + 96.09 +GMGC10.025_709_579.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 85.91 1 517 + 96.09 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.027_497_619.UNKNOWN GMGC10.95nr_block_0010 (AGly)aac6-32 (AGly)aac6-32 argannot 2021-Mar-27 EF614235:2247-2801 abricate abricate 1.0.1 84.94 1 498 + 89.73 ARO:3002586 ARO:0000013,ARO:0000052,ARO:3007382 ARO:0000016,ARO:0000016,ARO:3000707 GMGC10.027_733_176.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 80.53 2 522 + 97.55 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.028_010_615.UNKNOWN GMGC10.95nr_block_0010 (Gly)VanY_Ng (Gly)VanY_Ng argannot 2021-Mar-27 NG_048515:101-691 abricate abricate 1.0.1 86.54 3 522 + 87.99 ARO:3002956 ARO:3000081 ARO:3000081 GMGC10.029_045_561.YYAR GMGC10.95nr_block_0010 (AGly)satA (AGly)satA argannot 2021-Mar-27 NG_064662:101_622 abricate abricate 1.0.1 82.93 1 492 + 94.25 ARO:3002897 ARO:0000012 ARO:3000034 -GMGC10.029_134_237.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 81.75 1 511 + 94.41 +GMGC10.029_134_237.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 81.75 1 511 + 94.41 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.030_014_762.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 87.17 1 522 + 98.31 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.031_625_533.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 81.98 2 506 + 95.1 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.033_301_139.FOLA GMGC10.95nr_block_0010 (Tmt)dfr22 (Tmt)dfr22 argannot 2021-Mar-27 AJ628423:325-822 abricate abricate 1.0.1 100.0 1 498 + 100.0 ARO:3005354 ARO:3000188 ARO:3000171 GMGC10.034_105_239.FOLA GMGC10.95nr_block_0010 (Tmt)dfrA12 (Tmt)dfrA12 argannot 2021-Mar-27 Z21672:310-807 abricate abricate 1.0.1 99.8 1 498 + 100.0 ARO:3002858 ARO:3000188 ARO:3000171 -GMGC10.034_709_662.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 83.72 1 508 + 94.23 +GMGC10.034_709_662.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 83.72 1 508 + 94.23 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.035_591_932.YYAR GMGC10.95nr_block_0010 (AGly)satA (AGly)satA argannot 2021-Mar-27 NG_064662:101_622 abricate abricate 1.0.1 82.15 1 521 + 99.81 ARO:3002897 ARO:0000012 ARO:3000034 GMGC10.037_053_149.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 81.19 2 522 + 98.12 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.037_526_973.YYAR GMGC10.95nr_block_0010 (AGly)satA (AGly)satA argannot 2021-Mar-27 NG_064662:101_622 abricate abricate 1.0.1 85.06 1 522 + 100.0 ARO:3002897 ARO:0000012 ARO:3000034 @@ -194,7 +194,7 @@ GMGC10.043_148_447.UNKNOWN GMGC10.95nr_block_0010 (AGly)aac (AGly)aac argannot 2 GMGC10.043_410_997.UNKNOWN GMGC10.95nr_block_0010 (Gly)vanZ-A (Gly)vanZ-A argannot 2021-Mar-27 M97297:10116-10601 abricate abricate 1.0.1 87.55 2 491 + 98.35 ARO:3002962 ARO:3000081 ARO:3000081 GMGC10.043_592_843.YYAR GMGC10.95nr_block_0010 (AGly)satA (AGly)satA argannot 2021-Mar-27 NG_064662:101_622 abricate abricate 1.0.1 88.89 1 522 + 100.0 ARO:3002897 ARO:0000012 ARO:3000034 GMGC10.044_008_696.UNKNOWN GMGC10.95nr_block_0010 (Gly)vanZ-A (Gly)vanZ-A argannot 2021-Mar-27 M97297:10116-10601 abricate abricate 1.0.1 87.96 2 491 + 98.35 ARO:3002962 ARO:3000081 ARO:3000081 -GMGC10.045_176_356.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 87.04 1 517 + 96.28 +GMGC10.045_176_356.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 87.04 1 517 + 96.28 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.045_525_957.UNKNOWN GMGC10.95nr_block_0010 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 81.77 2 522 + 98.12 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.046_592_803.FOLA GMGC10.95nr_block_0010 (Tmt)dfrG (Tmt)dfrG argannot 2021-Mar-27 AB205645:1013-1510 abricate abricate 1.0.1 87.96 2 490 + 98.19 ARO:3002868 ARO:3000188 ARO:3000171 GMGC10.001_965_233.UNKNOWN GMGC10.95nr_block_0011 (AGly)aac3-I (AGly)aac3-I argannot 2021-Mar-27 X15852:1250-1783 abricate abricate 1.0.1 99.06 1 534 + 100.0 ARO:3002528 ARO:0000003,ARO:0000035,ARO:3007382 ARO:0000016,ARO:0000016,ARO:3000707 @@ -218,7 +218,7 @@ GMGC10.013_705_585.UNKNOWN GMGC10.95nr_block_0011 (AGly)aac2-Ic (AGly)aac2-Ic ar GMGC10.014_693_864.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 85.85 1 516 + 97.18 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.015_873_452.AAC GMGC10.95nr_block_0011 (AGly)aac2-Ib (AGly)aac2-Ib argannot 2021-Mar-27 U41471:266-822 abricate abricate 1.0.1 85.22 1 548 + 93.2 ARO:3002524 ARO:0000007,ARO:0000038,ARO:0000052,ARO:3007377,ARO:3007382 ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:3000707 GMGC10.016_971_786.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 81.07 13 534 + 98.12 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 -GMGC10.018_532_142.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 100.0 1 525 + 97.77 +GMGC10.018_532_142.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 100.0 1 525 + 97.77 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.018_798_756.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 80.23 14 534 + 98.12 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.018_800_315.UNKNOWN GMGC10.95nr_block_0011 (Gly)VanY_Ng (Gly)VanY_Ng argannot 2021-Mar-27 NG_048515:101-691 abricate abricate 1.0.1 81.14 5 497 + 83.42 ARO:3002956 ARO:3000081 ARO:3000081 GMGC10.018_976_381.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 85.25 10 531 + 98.31 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 @@ -249,7 +249,7 @@ GMGC10.024_180_939.UNKNOWN GMGC10.95nr_block_0011 (AGly)aac2-Ic (AGly)aac2-Ic ar GMGC10.024_184_329.UNKNOWN GMGC10.95nr_block_0011 (AGly)aac2-Ic (AGly)aac2-Ic argannot 2021-Mar-27 U72714:373-918 abricate abricate 1.0.1 80.73 1 545 + 99.82 ARO:3002525 ARO:0000007,ARO:0000038,ARO:0000052,ARO:3007377,ARO:3007382 ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:3000707 GMGC10.024_746_963.UNKNOWN GMGC10.95nr_block_0011 (AGly)aac2-Ic (AGly)aac2-Ic argannot 2021-Mar-27 U72714:373-918 abricate abricate 1.0.1 80.04 16 546 + 97.25 ARO:3002525 ARO:0000007,ARO:0000038,ARO:0000052,ARO:3007377,ARO:3007382 ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:3000707 GMGC10.025_322_717.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 83.14 13 534 + 98.31 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 -GMGC10.025_737_202.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 86.63 1 531 + 98.88 +GMGC10.025_737_202.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 86.63 1 531 + 98.88 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.025_740_757.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 84.1 13 534 + 98.31 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.026_144_179.UNKNOWN GMGC10.95nr_block_0011 (AGly)aac2-Ic (AGly)aac2-Ic argannot 2021-Mar-27 U72714:373-918 abricate abricate 1.0.1 82.56 8 546 + 98.72 ARO:3002525 ARO:0000007,ARO:0000038,ARO:0000052,ARO:3007377,ARO:3007382 ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:3000707 GMGC10.026_797_458.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 80.59 13 521 + 95.67 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 @@ -289,7 +289,7 @@ GMGC10.041_526_753.UNKNOWN GMGC10.95nr_block_0011 (AGly)AAC(6')-Isa (AGly)AAC(6' GMGC10.041_528_269.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 80.65 13 534 + 98.31 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.041_889_873.UNKNOWN GMGC10.95nr_block_0011 (Gly)VanY_Ng (Gly)VanY_Ng argannot 2021-Mar-27 NG_048515:101-691 abricate abricate 1.0.1 85.9 5 542 + 90.86 ARO:3002956 ARO:3000081 ARO:3000081 GMGC10.044_025_220.UNKNOWN GMGC10.95nr_block_0011 (AGly)aac2-Ic (AGly)aac2-Ic argannot 2021-Mar-27 U72714:373-918 abricate abricate 1.0.1 80.73 1 465 + 85.16 ARO:3002525 ARO:0000007,ARO:0000038,ARO:0000052,ARO:3007377,ARO:3007382 ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:3000707 -GMGC10.044_997_712.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 80.94 2 529 + 97.95 +GMGC10.044_997_712.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt_strepv (Phe)cpt_strepv argannot 2021-Mar-27 U09991:1412-1948 abricate abricate 1.0.1 80.94 2 529 + 97.95 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.045_015_770.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 86.06 1 531 + 100.0 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.045_337_825.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 87.76 1 531 + 100.0 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.045_386_229.UNKNOWN GMGC10.95nr_block_0011 (Phe)cpt (Phe)cpt argannot 2021-Mar-27 NG_051909:101-631 abricate abricate 1.0.1 83.53 13 534 + 98.31 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 diff --git a/outputs/hamronized/abricate.megares.tsv b/outputs/hamronized/abricate.megares.tsv index d86d7d5..d3a1b4b 100644 --- a/outputs/hamronized/abricate.megares.tsv +++ b/outputs/hamronized/abricate.megares.tsv @@ -592,7 +592,7 @@ GMGC10.018_660_446.FOLA GMGC10.95nr_block_0010 DFRI Drugs:Trimethoprim:Dihydrofo GMGC10.019_134_686.UNKNOWN GMGC10.95nr_block_0010 AAC6-PRIME Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC6-PRIME megares 2021-Mar-27 MEG_124 abricate abricate 1.0.1 95.49 35 522 + 99.8 ARO:3002563 ARO:0000007,ARO:0000013,ARO:0000035,ARO:0000038,ARO:0000052,ARO:3007378,ARO:3007379 ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016 GMGC10.019_306_601.VANZ GMGC10.95nr_block_0010 VANZA Drugs:Glycopeptides:VanA-type_accessory_protein:VANZA megares 2021-Mar-27 MEG_7615 abricate abricate 1.0.1 87.03 1 509 + 99.8 ARO:3002962 ARO:3000081 ARO:3000081 GMGC10.020_078_505.YYAR GMGC10.95nr_block_0010 SAT Drugs:Nucleosides:Streptothricin_acetyltransferase:SAT megares 2021-Mar-27 MEG_6164 abricate abricate 1.0.1 80.27 1 522 + 100.0 ARO:3002897 ARO:0000012 ARO:3000034 -GMGC10.020_791_682.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 85.14 1 518 + 96.46 +GMGC10.020_791_682.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 85.14 1 518 + 96.46 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.020_836_424.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 80.65 2 522 + 97.93 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.022_233_330.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 82.38 1 522 + 98.31 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.024_353_370.YYAR GMGC10.95nr_block_0010 SAT Drugs:Nucleosides:Streptothricin_acetyltransferase:SAT megares 2021-Mar-27 MEG_6164 abricate abricate 1.0.1 87.17 1 522 + 100.0 ARO:3002897 ARO:0000012 ARO:3000034 @@ -600,18 +600,18 @@ GMGC10.025_332_229.YYAR GMGC10.95nr_block_0010 SAT Drugs:Nucleosides:Streptothri GMGC10.025_390_872.YYAR GMGC10.95nr_block_0010 SAT Drugs:Nucleosides:Streptothricin_acetyltransferase:SAT megares 2021-Mar-27 MEG_6164 abricate abricate 1.0.1 95.78 1 522 + 100.0 ARO:3002897 ARO:0000012 ARO:3000034 GMGC10.025_631_197.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 83.4 2 507 + 95.29 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.025_670_095.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 81.19 2 522 + 98.12 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 -GMGC10.025_709_579.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 85.91 1 517 + 96.09 +GMGC10.025_709_579.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 85.91 1 517 + 96.09 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.027_497_619.UNKNOWN GMGC10.95nr_block_0010 AAC6-PRIME Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC6-PRIME megares 2021-Mar-27 MEG_204 abricate abricate 1.0.1 86.55 1 498 + 89.73 ARO:3002586 ARO:0000013,ARO:0000052,ARO:3007382 ARO:0000016,ARO:0000016,ARO:3000707 GMGC10.027_733_176.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 80.53 2 522 + 97.55 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.028_010_615.UNKNOWN GMGC10.95nr_block_0010 VANYA Drugs:Glycopeptides:VanA-type_accessory_protein:VANYA megares 2021-Mar-27 MEG_7593 abricate abricate 1.0.1 86.54 3 522 + 87.99 ARO:3002956 ARO:3000081 ARO:3000081 GMGC10.029_045_561.YYAR GMGC10.95nr_block_0010 SAT Drugs:Nucleosides:Streptothricin_acetyltransferase:SAT megares 2021-Mar-27 MEG_6164 abricate abricate 1.0.1 82.93 1 492 + 94.25 ARO:3002897 ARO:0000012 ARO:3000034 -GMGC10.029_134_237.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 81.75 1 511 + 94.41 +GMGC10.029_134_237.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 81.75 1 511 + 94.41 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.029_703_019.UNKNOWN GMGC10.95nr_block_0010 CPAA Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:CPAA megares 2021-Mar-27 MEG_2097 abricate abricate 1.0.1 80.81 1 469 + 96.5 ARO:3003994 ARO:3003993 ARO:0000016 GMGC10.030_014_762.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 87.17 1 522 + 98.31 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.031_625_533.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 81.98 2 506 + 95.1 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.033_301_139.FOLA GMGC10.95nr_block_0010 DFRA Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA megares 2021-Mar-27 MEG_2520 abricate abricate 1.0.1 99.8 1 498 + 100.0 ARO:3005354 ARO:3000188 ARO:3000171 GMGC10.034_105_239.FOLA GMGC10.95nr_block_0010 DFRA Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA megares 2021-Mar-27 MEG_2551 abricate abricate 1.0.1 99.8 1 498 + 100.0 ARO:3002858 ARO:3000188 ARO:3000171 -GMGC10.034_709_662.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 83.72 1 508 + 94.23 +GMGC10.034_709_662.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 83.72 1 508 + 94.23 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.035_591_932.YYAR GMGC10.95nr_block_0010 SAT Drugs:Nucleosides:Streptothricin_acetyltransferase:SAT megares 2021-Mar-27 MEG_6164 abricate abricate 1.0.1 82.15 1 521 + 99.81 ARO:3002897 ARO:0000012 ARO:3000034 GMGC10.037_053_149.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 81.19 2 522 + 98.12 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.037_526_973.YYAR GMGC10.95nr_block_0010 SAT Drugs:Nucleosides:Streptothricin_acetyltransferase:SAT megares 2021-Mar-27 MEG_6164 abricate abricate 1.0.1 85.06 1 522 + 100.0 ARO:3002897 ARO:0000012 ARO:3000034 @@ -623,7 +623,7 @@ GMGC10.043_148_447.UNKNOWN GMGC10.95nr_block_0010 AAC6-PRIME Drugs:Aminoglycosid GMGC10.043_410_997.UNKNOWN GMGC10.95nr_block_0010 VANZA Drugs:Glycopeptides:VanA-type_accessory_protein:VANZA megares 2021-Mar-27 MEG_7616 abricate abricate 1.0.1 88.33 1 497 + 99.79 ARO:3002962 ARO:3000081 ARO:3000081 GMGC10.043_592_843.YYAR GMGC10.95nr_block_0010 SAT Drugs:Nucleosides:Streptothricin_acetyltransferase:SAT megares 2021-Mar-27 MEG_6164 abricate abricate 1.0.1 88.89 1 522 + 100.0 ARO:3002897 ARO:0000012 ARO:3000034 GMGC10.044_008_696.UNKNOWN GMGC10.95nr_block_0010 VANZA Drugs:Glycopeptides:VanA-type_accessory_protein:VANZA megares 2021-Mar-27 MEG_7616 abricate abricate 1.0.1 87.83 1 493 + 98.97 ARO:3002962 ARO:3000081 ARO:3000081 -GMGC10.045_176_356.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 87.04 1 517 + 96.28 +GMGC10.045_176_356.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 87.04 1 517 + 96.28 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.045_525_957.UNKNOWN GMGC10.95nr_block_0010 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 81.77 2 522 + 98.12 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.046_592_803.FOLA GMGC10.95nr_block_0010 DFRG Drugs:Trimethoprim:Dihydrofolate_reductase:DFRG megares 2021-Mar-27 MEG_2579 abricate abricate 1.0.1 87.96 2 490 + 98.19 ARO:3002868 ARO:3000188 ARO:3000171 GMGC10.001_965_233.UNKNOWN GMGC10.95nr_block_0011 AAC3 Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC3 megares 2021-Mar-27 MEG_67 abricate abricate 1.0.1 99.06 1 534 + 100.0 ARO:3002528 ARO:0000003,ARO:0000035,ARO:3007382 ARO:0000016,ARO:0000016,ARO:3000707 @@ -680,7 +680,7 @@ GMGC10.017_550_950.YYAR GMGC10.95nr_block_0011 SAT Drugs:Nucleosides:Streptothri GMGC10.017_560_749.UNKNOWN GMGC10.95nr_block_0011 SAT Drugs:Nucleosides:Streptothricin_acetyltransferase:SAT megares 2021-Mar-27 MEG_6158 abricate abricate 1.0.1 91.85 1 552 + 98.38 ARO:3005045 ARO:0000012 ARO:3000034 GMGC10.017_978_296.BLC GMGC10.95nr_block_0011 ACT Drugs:betalactams:Class_C_betalactamases:ACT megares 2021-Mar-27 MEG_497 abricate abricate 1.0.1 81.03 1 232 + 100.0 ARO:3000072 ARO:0000020,ARO:0000032,ARO:0000044,ARO:3000008 ARO:3000007,ARO:3000007,ARO:3000007,ARO:3000007 GMGC10.018_349_814.EMRR GMGC10.95nr_block_0011 EMRR Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR megares 2021-Mar-27 MEG_2734 abricate abricate 1.0.1 83.99 1 506 + 95.29 -GMGC10.018_532_142.UNKNOWN GMGC10.95nr_block_0011 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 100.0 1 525 + 97.77 +GMGC10.018_532_142.UNKNOWN GMGC10.95nr_block_0011 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 100.0 1 525 + 97.77 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.018_756_587.EMRR GMGC10.95nr_block_0011 EMRR Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR megares 2021-Mar-27 MEG_2734 abricate abricate 1.0.1 80.12 1 503 + 94.73 GMGC10.018_798_756.UNKNOWN GMGC10.95nr_block_0011 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 80.23 14 534 + 98.12 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.018_800_315.UNKNOWN GMGC10.95nr_block_0011 VANYA Drugs:Glycopeptides:VanA-type_accessory_protein:VANYA megares 2021-Mar-27 MEG_7593 abricate abricate 1.0.1 81.14 5 497 + 83.42 ARO:3002956 ARO:3000081 ARO:3000081 @@ -729,7 +729,7 @@ GMGC10.025_322_717.UNKNOWN GMGC10.95nr_block_0011 CPT Drugs:Phenicol:Chloramphen GMGC10.025_443_474.YYAR GMGC10.95nr_block_0011 SAT Drugs:Nucleosides:Streptothricin_acetyltransferase:SAT megares 2021-Mar-27 MEG_6158 abricate abricate 1.0.1 94.53 1 548 + 98.74 ARO:3005045 ARO:0000012 ARO:3000034 GMGC10.025_467_012.UNKNOWN GMGC10.95nr_block_0011 AAC6-PRIME Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC6-PRIME megares 2021-Mar-27 MEG_211 abricate abricate 1.0.1 80.25 1 552 + 98.92 ARO:3002556 ARO:0000007,ARO:0000013,ARO:0000035,ARO:0000038,ARO:0000052,ARO:3007378,ARO:3007379 ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016 GMGC10.025_486_118.UNKNOWN GMGC10.95nr_block_0011 AAC6-PRIME Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC6-PRIME megares 2021-Mar-27 MEG_89 abricate abricate 1.0.1 97.24 1 543 + 100.0 ARO:3002589 ARO:0000007,ARO:0000013,ARO:0000035,ARO:0000038,ARO:0000052,ARO:3007378,ARO:3007379 ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016 -GMGC10.025_737_202.UNKNOWN GMGC10.95nr_block_0011 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 86.63 1 531 + 98.88 +GMGC10.025_737_202.UNKNOWN GMGC10.95nr_block_0011 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 86.63 1 531 + 98.88 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.025_740_757.UNKNOWN GMGC10.95nr_block_0011 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 84.1 13 534 + 98.31 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.025_823_708.YYAR GMGC10.95nr_block_0011 SAT Drugs:Nucleosides:Streptothricin_acetyltransferase:SAT megares 2021-Mar-27 MEG_6158 abricate abricate 1.0.1 92.75 1 552 + 98.38 ARO:3005045 ARO:0000012 ARO:3000034 GMGC10.025_825_445.UNKNOWN GMGC10.95nr_block_0011 SAT Drugs:Nucleosides:Streptothricin_acetyltransferase:SAT megares 2021-Mar-27 MEG_6158 abricate abricate 1.0.1 91.85 1 552 + 98.38 ARO:3005045 ARO:0000012 ARO:3000034 @@ -791,7 +791,7 @@ GMGC10.043_478_788.EMRR GMGC10.95nr_block_0011 EMRR Multi-compound:Drug_and_bioc GMGC10.044_025_220.UNKNOWN GMGC10.95nr_block_0011 AAC2-PRIME Drugs:Aminoglycosides:Aminoglycoside_N-acetyltransferases:AAC2-PRIME megares 2021-Mar-27 MEG_13 abricate abricate 1.0.1 80.73 1 465 + 85.16 ARO:3002525 ARO:0000007,ARO:0000038,ARO:0000052,ARO:3007377,ARO:3007382 ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:3000707 GMGC10.044_196_019.BLC GMGC10.95nr_block_0011 ACT Drugs:betalactams:Class_C_betalactamases:ACT megares 2021-Mar-27 MEG_497 abricate abricate 1.0.1 82.89 1 228 + 98.28 ARO:3000072 ARO:0000020,ARO:0000032,ARO:0000044,ARO:3000008 ARO:3000007,ARO:3000007,ARO:3000007,ARO:3000007 GMGC10.044_708_555.EMRR GMGC10.95nr_block_0011 EMRR Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR megares 2021-Mar-27 MEG_2734 abricate abricate 1.0.1 85.11 1 497 + 93.6 -GMGC10.044_997_712.UNKNOWN GMGC10.95nr_block_0011 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 80.94 2 529 + 97.95 +GMGC10.044_997_712.UNKNOWN GMGC10.95nr_block_0011 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2114 abricate abricate 1.0.1 80.94 2 529 + 97.95 ARO:3000249 ARO:3000387 ARO:3000387 GMGC10.045_015_770.UNKNOWN GMGC10.95nr_block_0011 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 86.06 1 531 + 100.0 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.045_337_825.UNKNOWN GMGC10.95nr_block_0011 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 87.76 1 531 + 100.0 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 GMGC10.045_386_229.UNKNOWN GMGC10.95nr_block_0011 CPT Drugs:Phenicol:Chloramphenicol_phosphotransferase:CPT megares 2021-Mar-27 MEG_2113 abricate abricate 1.0.1 83.53 13 534 + 98.31 ARO:3003111 ARO:0000066,ARO:3001317 ARO:0000017,ARO:3000670 diff --git a/outputs/hamronized/abricate.resfinderfg.tsv b/outputs/hamronized/abricate.resfinderfg.tsv index b96d7f0..02023ee 100644 --- a/outputs/hamronized/abricate.resfinderfg.tsv +++ b/outputs/hamronized/abricate.resfinderfg.tsv @@ -3880,7 +3880,7 @@ Unnamed: 0 input_file_name gene_symbol gene_name reference_database_id reference 3878 GMGC10.95nr_block_0291 Streptomycin "Streptomycin 3''-adenylyltransferase""|JN625762.1|chicken_microbiota|SPT" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 99.22 GMGC10.049_395_572.AADA 106 749 + 95.81 ARO:3002630 ARO:0000039 ARO:0000016 3879 GMGC10.95nr_block_0291 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KX125551.1|newborn_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 85.47 GMGC10.146_283_298.DDL 175 1303 + 99.82 ARO:3002909 ARO:3000081 ARO:3000081 3880 GMGC10.95nr_block_0291 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KF629723.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 99.92 GMGC10.179_442_181.DDL 1 1314 + 100.0 ARO:3002909 ARO:3000081 ARO:3000081 -3881 GMGC10.95nr_block_0291 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 89.64 GMGC10.179_580_758.MURF 280 1293 + 100.0 +3881 GMGC10.95nr_block_0291 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 89.64 GMGC10.179_580_758.MURF 280 1293 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 3882 GMGC10.95nr_block_0291 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KX125843.1|human_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 93.03 GMGC10.181_752_585.MURF 19 1305 + 98.77 ARO:3004795 ARO:3000008 ARO:3000007 3883 GMGC10.95nr_block_0291 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KF629561.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 99.92 GMGC10.183_816_143.DDL 103 1287 + 100.0 ARO:3002909 ARO:3000081 ARO:3000081 3884 GMGC10.95nr_block_0291 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KF629178.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 99.24 GMGC10.183_962_656.DDL 1 1314 + 100.0 ARO:3002909 ARO:3000081 ARO:3000081 @@ -3898,7 +3898,7 @@ Unnamed: 0 input_file_name gene_symbol gene_name reference_database_id reference 3896 GMGC10.95nr_block_0292 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KX125757.1|human_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 80.0 GMGC10.203_039_928.MURF 1027 1371 + 100.0 ARO:3006977 ARO:0000020 ARO:3000007 3897 GMGC10.95nr_block_0292 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF630034.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 90.64 GMGC10.203_162_553.MURF 1 342 + 95.0 ARO:3002872 ARO:0000025 ARO:3007149 3898 GMGC10.95nr_block_0292 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KX125757.1|human_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 80.81 GMGC10.203_418_783.MURF 1027 1369 + 99.13 ARO:3006977 ARO:0000020 ARO:3000007 -3899 GMGC10.95nr_block_0292 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 97.83 GMGC10.204_750_403.MURF 328 1341 + 100.0 +3899 GMGC10.95nr_block_0292 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 97.83 GMGC10.204_750_403.MURF 328 1341 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 3900 GMGC10.95nr_block_0292 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF630034.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 91.39 GMGC10.205_660_123.MURF 1 360 + 100.0 ARO:3002872 ARO:0000025 ARO:3007149 3901 GMGC10.95nr_block_0292 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF630034.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 99.44 GMGC10.209_104_130.MURF 1 360 + 100.0 ARO:3002872 ARO:0000025 ARO:3007149 3902 GMGC10.95nr_block_0292 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KX125730.1|human_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 98.79 GMGC10.209_775_950.DDL 271 1344 + 100.0 ARO:3002909 ARO:3000081 ARO:3000081 @@ -3913,25 +3913,25 @@ Unnamed: 0 input_file_name gene_symbol gene_name reference_database_id reference 3911 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629153.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 94.31 GMGC10.050_449_695.MURF 490 1386 + 100.0 3912 GMGC10.95nr_block_0293 tetracycline "tetracycline efflux MFS transporter Tet(L)""|KY686302.1|Cabrales cheese|TET" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 99.85 GMGC10.054_105_342.UNKNOWN 54 1404 + 98.11 ARO:3000179 ARO:0000051 ARO:3000050 3913 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629153.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 95.65 GMGC10.054_822_879.MURF 490 1386 + 100.0 -3914 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 85.19 GMGC10.179_330_062.MURF 376 1388 + 99.9 +3914 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 85.19 GMGC10.179_330_062.MURF 376 1388 + 99.9 ARO:3003970 ARO:0000028 ARO:3000081 3915 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KX125843.1|human_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 87.93 GMGC10.179_577_121.MURF 97 1383 + 98.69 ARO:3004795 ARO:3000008 ARO:3000007 3916 GMGC10.95nr_block_0293 Tetracycline "Tetracycline resistance protein TetO""|KU547432.1|feces|TET" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 98.06 GMGC10.198_504_939.TETP 472 1398 + 90.88 ARO:3000556 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 3917 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629153.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 99.78 GMGC10.202_981_000.MURF 490 1380 + 99.33 -3918 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 98.62 GMGC10.204_783_873.MURF 376 1389 + 100.0 +3918 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 98.62 GMGC10.204_783_873.MURF 376 1389 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 3919 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KX125843.1|human_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 80.44 GMGC10.205_085_731.MURF 97 1383 + 99.0 ARO:3004795 ARO:3000008 ARO:3000007 3920 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629153.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 96.99 GMGC10.207_216_697.MURF 490 1386 + 100.0 -3921 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 90.04 GMGC10.208_363_192.MURF 376 1389 + 100.0 +3921 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 90.04 GMGC10.208_363_192.MURF 376 1389 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 3922 GMGC10.95nr_block_0293 D-alanyl-D-alanine "D-alanyl-D-alanine carboxypeptidase DacB""|KU606669.1|Preterm_infant_stool|AMP" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 83.25 GMGC10.210_887_911.DACB 595 1412 + 97.73 3923 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629153.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 94.54 GMGC10.258_012_039.MURF 490 1386 + 100.0 -3924 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 89.64 GMGC10.299_163_755.MURF 376 1389 + 100.0 +3924 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 89.64 GMGC10.299_163_755.MURF 376 1389 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 3925 GMGC10.95nr_block_0293 D-alanine--D-alanine "D-alanine--D-alanine ligase B""|KX125852.1|human_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 97.67 GMGC10.306_692_193.DDL 523 1422 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 3926 GMGC10.95nr_block_0293 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KX125757.1|human_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 99.42 GMGC10.311_176_114.MURF 1060 1404 + 100.0 ARO:3006977 ARO:0000020 ARO:3000007 -3927 GMGC10.95nr_block_0294 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 98.72 GMGC10.052_057_586.MURF 409 1422 + 100.0 -3928 GMGC10.95nr_block_0294 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 83.74 GMGC10.053_735_693.MURF 433 1443 + 99.61 -3929 GMGC10.95nr_block_0294 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 84.24 GMGC10.053_750_220.MURF 433 1443 + 99.61 +3927 GMGC10.95nr_block_0294 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 98.72 GMGC10.052_057_586.MURF 409 1422 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 +3928 GMGC10.95nr_block_0294 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 83.74 GMGC10.053_735_693.MURF 433 1443 + 99.61 ARO:3003970 ARO:0000028 ARO:3000081 +3929 GMGC10.95nr_block_0294 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 84.24 GMGC10.053_750_220.MURF 433 1443 + 99.61 ARO:3003970 ARO:0000028 ARO:3000081 3930 GMGC10.95nr_block_0294 putative "putative peptidoglycan D%2CD-transpeptidase PenA""|KJ910979.1|feces|CAZ" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 93.98 GMGC10.150_092_164.FTSI 1 1428 + 81.65 ARO:3003937 ARO:0000062,ARO:3000646 ARO:3000007,ARO:3000007 3931 GMGC10.95nr_block_0294 putative "putative peptidoglycan D%2CD-transpeptidase PenA""|KU606462.1|Preterm_infant_stool|CAZ" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 95.74 GMGC10.150_377_408.FTSI 1 1032 + 94.25 ARO:3004446 ARO:0000062,ARO:3000637,ARO:3000644,ARO:3000645,ARO:3000649,ARO:3000650 ARO:3000007,ARO:3000007,ARO:3000007,ARO:3000007,ARO:3000007,ARO:3000007 -3932 GMGC10.95nr_block_0294 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 90.24 GMGC10.179_228_184.MURF 436 1449 + 100.0 +3932 GMGC10.95nr_block_0294 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 90.24 GMGC10.179_228_184.MURF 436 1449 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 3933 GMGC10.95nr_block_0294 D-alanyl-D-alanine "D-alanyl-D-alanine carboxypeptidase DacB""|KU606669.1|Preterm_infant_stool|AMP" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 82.92 GMGC10.179_275_782.DACB 598 1434 + 100.0 3934 GMGC10.95nr_block_0294 Bifunctional "Bifunctional AAC/APH""|KX125861.1|human_gut|GEN" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 99.92 GMGC10.184_987_548.AACA-APHD 235 1452 + 100.0 ARO:3002597 ARO:0000007,ARO:0000013,ARO:0000035,ARO:0000038,ARO:0000049,ARO:0000052,ARO:3004015,ARO:3007378,ARO:3007379 ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016,ARO:3000707 3935 GMGC10.95nr_block_0294 D-alanyl-D-alanine "D-alanyl-D-alanine carboxypeptidase DacB""|KU606669.1|Preterm_infant_stool|AMP" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 80.38 GMGC10.203_624_316.DACB 598 1433 + 99.88 @@ -4150,7 +4150,7 @@ Unnamed: 0 input_file_name gene_symbol gene_name reference_database_id reference 4148 GMGC10.wastewater.95nr_block_0001 D-alanine--D-alanine "D-alanine--D-alanine ligase""|KF630002.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 100.0 GMGC10.180_617_600.DDL 31 891 + 81.77 4149 GMGC10.wastewater.95nr_block_0001 Dihydrofolate "Dihydrofolate reductase""|KF628261.1|pediatric_fecal_sample|TMP" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 97.88 GMGC10.181_363_389.FOLA 1 519 + 100.0 ARO:3002868 ARO:3000188 ARO:3000171 4150 GMGC10.wastewater.95nr_block_0001 Dihydrofolate "Dihydrofolate reductase""|KF629666.1|pediatric_fecal_sample|TMP" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 95.81 GMGC10.181_410_582.FOLA 1 453 + 87.28 ARO:3002868 ARO:3000188 ARO:3000171 -4151 GMGC10.wastewater.95nr_block_0001 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 93.9 GMGC10.181_623_170.MURF 1 852 + 84.02 +4151 GMGC10.wastewater.95nr_block_0001 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 93.9 GMGC10.181_623_170.MURF 1 852 + 84.02 ARO:3003970 ARO:0000028 ARO:3000081 4152 GMGC10.wastewater.95nr_block_0001 D-alanine--D-alanine "D-alanine--D-alanine ligase""|KX125850.1|human_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 98.19 GMGC10.181_688_826.DDL 1 996 + 100.0 ARO:3002909 ARO:3000081 ARO:3000081 4153 GMGC10.wastewater.95nr_block_0001 D-alanine--D-alanine "D-alanine--D-alanine ligase B""|KF629684.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 95.11 GMGC10.181_894_042.DDL 28 948 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 4154 GMGC10.wastewater.95nr_block_0001 D-alanine--D-alanine "D-alanine--D-alanine ligase B""|KF629923.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 98.55 GMGC10.181_943_904.DDL 1 966 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 @@ -4398,7 +4398,7 @@ Unnamed: 0 input_file_name gene_symbol gene_name reference_database_id reference 4396 GMGC10.wastewater.95nr_block_0002 "Beta-lactamase""|GQ343009.1|human" "Beta-lactamase""|GQ343009.1|human fecal matter|AMX" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 97.73 GMGC10.146_639_200.AMPC 37 1182 + 100.0 ARO:3002059 ARO:0000044 ARO:3000007 4397 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase""|KF629844.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 95.97 GMGC10.146_714_893.DDL 1 1092 + 100.0 ARO:3002909 ARO:3000081 ARO:3000081 4398 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase""|KF629272.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 96.01 GMGC10.146_872_252.DDL 1 1053 + 100.0 ARO:3000005 ARO:3000081 ARO:3000081 -4399 GMGC10.wastewater.95nr_block_0002 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 94.36 GMGC10.147_056_277.MURF 1 1011 + 99.7 +4399 GMGC10.wastewater.95nr_block_0002 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 94.36 GMGC10.147_056_277.MURF 1 1011 + 99.7 ARO:3003970 ARO:0000028 ARO:3000081 4400 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase""|KX127868.1|newborn_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 96.85 GMGC10.148_827_073.DDL 1 1047 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 4401 GMGC10.wastewater.95nr_block_0002 Tetracycline "Tetracycline resistance protein%2C class C""|KU544921.1|feces|TET" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 99.83 GMGC10.150_329_216.TETA 1 1191 + 100.0 ARO:3000167 ARO:0000051 ARO:3000050 4402 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase B""|KX125154.1|human_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 86.17 GMGC10.178_555_561.DDL 1 1062 + 99.91 ARO:3003970 ARO:0000028 ARO:3000081 @@ -4417,7 +4417,7 @@ Unnamed: 0 input_file_name gene_symbol gene_name reference_database_id reference 4415 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase""|KF628888.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 99.62 GMGC10.183_723_539.DDL 22 1062 + 100.0 ARO:3000368 ARO:3000081 ARO:3000081 4416 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase B""|KX125154.1|human_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 90.68 GMGC10.183_827_319.DDL 52 1113 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 4417 GMGC10.wastewater.95nr_block_0002 Extended-spectrum "Extended-spectrum beta-lactamase PER-1""|MK935829.1|Human_feces|AMX" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 89.69 GMGC10.183_880_418.UNKNOWN 64 1062 + 99.8 ARO:3003097 ARO:0000044 ARO:3000007 -4418 GMGC10.wastewater.95nr_block_0002 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 90.26 GMGC10.184_024_690.MURF 277 1118 + 83.04 +4418 GMGC10.wastewater.95nr_block_0002 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 90.26 GMGC10.184_024_690.MURF 277 1118 + 83.04 ARO:3003970 ARO:0000028 ARO:3000081 4419 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KX127888.1|newborn_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 99.48 GMGC10.184_084_100.DDL 40 1185 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 4420 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KF628295.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 95.8 GMGC10.184_481_833.DDL 1 1095 + 99.73 ARO:3002909 ARO:3000081 ARO:3000081 4421 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KF628295.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 90.7 GMGC10.184_722_921.DDL 1 1086 + 98.91 ARO:3002909 ARO:3000081 ARO:3000081 @@ -4455,7 +4455,7 @@ Unnamed: 0 input_file_name gene_symbol gene_name reference_database_id reference 4453 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase""|KF628910.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 97.72 GMGC10.206_289_881.DDL 55 1107 + 100.0 ARO:3002909 ARO:3000081 ARO:3000081 4454 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|GQ343080.1|human fecal matter|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 90.46 GMGC10.206_440_676.DDL 1 996 + 100.0 ARO:3002910 ARO:3000081 ARO:3000081 4455 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KF628295.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 90.98 GMGC10.206_494_133.DDL 1 1098 + 100.0 ARO:3002909 ARO:3000081 ARO:3000081 -4456 GMGC10.wastewater.95nr_block_0002 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 93.69 GMGC10.206_642_538.MURF 82 1095 + 100.0 +4456 GMGC10.wastewater.95nr_block_0002 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 93.69 GMGC10.206_642_538.MURF 82 1095 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 4457 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KF628295.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 98.51 GMGC10.206_755_296.DDL 1 1077 + 98.09 ARO:3002909 ARO:3000081 ARO:3000081 4458 GMGC10.wastewater.95nr_block_0002 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KX125757.1|human_gut|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 100.0 GMGC10.206_885_178.MURF 787 1131 + 100.0 ARO:3006977 ARO:0000020 ARO:3000007 4459 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KF628791.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 99.18 GMGC10.207_581_442.DDL 1 1095 + 100.0 ARO:3002909 ARO:3000081 ARO:3000081 @@ -4508,7 +4508,7 @@ Unnamed: 0 input_file_name gene_symbol gene_name reference_database_id reference 4506 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase""|JN086161.1|human fecal matter|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 96.01 GMGC10.292_763_487.DDL 1 1053 + 99.72 ARO:3003970 ARO:0000028 ARO:3000081 4507 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KF628295.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 97.21 GMGC10.292_812_503.DDL 132 1098 + 88.07 ARO:3002909 ARO:3000081 ARO:3000081 4508 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KF628936.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 88.68 GMGC10.293_137_083.DDL 4 1098 + 100.0 ARO:3002909 ARO:3000081 ARO:3000081 -4509 GMGC10.wastewater.95nr_block_0002 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 96.32 GMGC10.293_157_425.MURF 223 1119 + 88.46 +4509 GMGC10.wastewater.95nr_block_0002 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine "UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase""|KF629588.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 96.32 GMGC10.293_157_425.MURF 223 1119 + 88.46 ARO:3003970 ARO:0000028 ARO:3000081 4510 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase A""|KF627901.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 95.45 GMGC10.293_204_114.DDL 1 1077 + 97.82 ARO:3002909 ARO:3000081 ARO:3000081 4511 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase""|KF628888.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 92.31 GMGC10.293_306_929.DDL 1 1041 + 100.0 ARO:3000368 ARO:3000081 ARO:3000081 4512 GMGC10.wastewater.95nr_block_0002 D-alanine--D-alanine "D-alanine--D-alanine ligase""|KF628886.1|pediatric_fecal_sample|CYC" resfinderfg 2021-Oct-18 abricate abricate 1.0.1 97.66 GMGC10.293_319_378.DDL 22 1089 + 100.0 ARO:3003970 ARO:0000028 ARO:3000081 diff --git a/tests/test_lib.py b/tests/test_lib.py index dfbb16a..893b96b 100644 --- a/tests/test_lib.py +++ b/tests/test_lib.py @@ -8,7 +8,8 @@ def test_map_to_aro(): ["MEG_21|Drugs|Aminoglycosides|Aminoglycoside_N-acetyltransferases|AAC3", 'megares'], ["1028085756|WP_063844287.1|1|1|cpt|cpt|phosphotransferase|2|CHLORAMPHENICOL|PHENICOL|chloramphenicol_phosphotransferase_CPT", 'ncbi'], ["gb|AAG57600.1|ARO:3000318|mphB", "sarg"], - ["(Phe)cpt_strepv:U09991:AAB36569:1412-1948:537", "argannot"] + ["(Phe)cpt_strepv:U09991:AAB36569:1412-1948:537", "argannot"], + ["MEG_4060|Metals|Multi-metal_resistance|Multi-metal_resistance_protein|MREA", "megares"] ] ARO = lib.get_aro_ontology() @@ -17,6 +18,7 @@ def test_map_to_aro(): ARO.get_term('ARO:3004623'), ARO.get_term('ARO:3000249'), ARO.get_term('ARO:3000318'), + ARO.get_term('ARO:3000249'), None ]