setup.py

#!/usr/bin/env python
# -*- coding: utf-8 -*-


try:
    from setuptools import setup
except ImportError:
    from distutils.core import setup


with open("README.rst") as readme_file:
    readme = readme_file.read()

with open("HISTORY.rst") as history_file:
    history = history_file.read().replace(".. :changelog:", "")

requirements = [
    "tensorflow",
    "Biopython",
    "pandas",
    "pysam",
]

test_requirements = [
    "pytest",
]

setup(
    name="kyos",
    version="0.2.0",
    description="Tools for haploid variant calling with Deep Neural Networks.",
    long_description=readme + "\n\n" + history,
    author="Nathan Xue",
    author_email="xue.nathanv1.0@gmail.com",
    url="https://github.com/CFSAN-Biostatistics/kyos",
    packages=[
        "kyos",
    ],
    package_dir={"kyos": "kyos"},
    include_package_data=True,
    install_requires=requirements,
    license="BSD",
    zip_safe=False,
    keywords=["bioinformatics", "NGS", "kyos"],
    classifiers=[
        "Development Status :: 2 - Pre-Alpha",
        "Intended Audience :: Developers",
        "License :: OSI Approved :: BSD License",
        "Natural Language :: English",
        "Programming Language :: Python :: 2",
        "Programming Language :: Python :: 2.7",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.4",
        "Programming Language :: Python :: 3.5",
        "Programming Language :: Python :: 3.6",
    ],
    entry_points={"console_scripts": ["kyos = kyos.cli:main"]},
    setup_requires=["pytest-runner"],
    tests_require=test_requirements,
)