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vcftools count: AttributeError: 'list' object has no attribute 'split' #10

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manimino opened this issue Aug 31, 2022 · 1 comment
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@manimino
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Traceback (most recent call last):
  File "/home/theo/anaconda3/bin/vcftoolz", line 8, in <module>
    sys.exit(main())
  File "/home/theo/anaconda3/lib/python3.9/site-packages/vcftoolz/cli.py", line 223, in main
    return args.func(args)  # this executes the function previously associated with the subparser with set_defaults
  File "/home/theo/anaconda3/lib/python3.9/site-packages/vcftoolz/cli.py", line 147, in count_command
    vcftoolz.count(args.vcf_path, args.exclude_snps, args.exclude_indels, args.exclude_vars, args.exclude_refs, args.exclude_hetero, args.exclude_filtered, args.exclude_missing)
  File "/home/theo/anaconda3/lib/python3.9/site-packages/vcftoolz/vcftoolz.py", line 938, in count
    filters = filt.split(';')
AttributeError: 'list' object has no attribute 'split'

The vcf file worked fine with vcftoolz compare but vcftoolz count throws that error.

@Elyanes
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Elyanes commented Sep 13, 2023

Hello, I have the same problem, any idea ?

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