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AndreasHeger

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Sep 22, 2015

5fc2cc5 · Sep 22, 2015

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Name		Name	Last commit message	Last commit date
parent directory ..
align_all_vs_all.py		align_all_vs_all.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
align_mali_vs_mali.py		align_mali_vs_mali.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
align_pairs.py		align_pairs.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
align_transcripts.py		align_transcripts.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
analyze_sequences.py		analyze_sequences.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
blast2fasta.py		blast2fasta.py	added files	Sep 22, 2015
codeml2tsv.py		codeml2tsv.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
codemls2tsv.py		codemls2tsv.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
codonbias_acai2tsv.py		codonbias_acai2tsv.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
codonbias_weights2tsv.py		codonbias_weights2tsv.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
correlate_fasta_identifier.py		correlate_fasta_identifier.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
data2phylocontrasts.py		data2phylocontrasts.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gff_ensembl2gbrowser.py		gff_ensembl2gbrowser.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_analyze_predictions.py		gpipe_analyze_predictions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_analyze_queries.py		gpipe_analyze_queries.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_assignments2pairs.py		gpipe_assignments2pairs.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_cluster_genes_by_category.py		gpipe_cluster_genes_by_category.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_compare_predictions.py		gpipe_compare_predictions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_compare_predictions2exons.py		gpipe_compare_predictions2exons.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_create_gbrowser_files.py		gpipe_create_gbrowser_files.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_exonerate2regions.py		gpipe_exonerate2regions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_exonerate_combine_regions.py		gpipe_exonerate_combine_regions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_exons2clusters.py		gpipe_exons2clusters.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_exons2exons.py		gpipe_exons2exons.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_exons2genes.py		gpipe_exons2genes.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_exons2map.py		gpipe_exons2map.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_exons2stats.py		gpipe_exons2stats.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_export_aaa.py		gpipe_export_aaa.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_export_all.py		gpipe_export_all.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_export_code.py		gpipe_export_code.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_export_predictions.py		gpipe_export_predictions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_extract_regions.py		gpipe_extract_regions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_filter_fasta.py		gpipe_filter_fasta.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_gbrowser_clone_devel.py		gpipe_gbrowser_clone_devel.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_gbrowser_delete_features.py		gpipe_gbrowser_delete_features.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_gene2gene.py		gpipe_gene2gene.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_genes2quality.py		gpipe_genes2quality.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_get_genes.py		gpipe_get_genes.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_get_predictions.py		gpipe_get_predictions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_gff2predictions.py		gpipe_gff2predictions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_grep_predictions.py		gpipe_grep_predictions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_gtf2exons.py		gpipe_gtf2exons.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_id2genes.py		gpipe_id2genes.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_liftover_predictions.py		gpipe_liftover_predictions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_list2regions.py		gpipe_list2regions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_pairs2gene_structure.py		gpipe_pairs2gene_structure.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_patch_translations.py		gpipe_patch_translations.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_predict_genes.py		gpipe_predict_genes.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_prediction2pairs.py		gpipe_prediction2pairs.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_predictions2assembly.py		gpipe_predictions2assembly.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_predictions2cds.py		gpipe_predictions2cds.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_predictions2disruptions.py		gpipe_predictions2disruptions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_predictions2genes.py		gpipe_predictions2genes.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_predictions2introns.py		gpipe_predictions2introns.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_predictions2pseudogenes.py		gpipe_predictions2pseudogenes.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_predictions2transcripts.py		gpipe_predictions2transcripts.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_prune_fasta.py		gpipe_prune_fasta.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_select_transcripts.py		gpipe_select_transcripts.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_select_transcripts_per_gene.py		gpipe_select_transcripts_per_gene.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_setup.py		gpipe_setup.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
gpipe_translate_forward2backward.py		gpipe_translate_forward2backward.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
graph2besthits.py		graph2besthits.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
graph2stats.py		graph2stats.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
graph_blast2besthits.py		graph_blast2besthits.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
graph_blast2pairs.py		graph_blast2pairs.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
graph_check.py		graph_check.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
graph_check_transitivity.py		graph_check_transitivity.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
graph_cluster_by_species.py		graph_cluster_by_species.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
graph_combine_links_redundant.py		graph_combine_links_redundant.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
graph_filter_links_redundant.py		graph_filter_links_redundant.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
graph_group_links_by_taxonomy.py		graph_group_links_by_taxonomy.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
graph_links2gdl.py		graph_links2gdl.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
graph_map_links.py		graph_map_links.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
graph_reweight_links.py		graph_reweight_links.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
introns2rates.py		introns2rates.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
jalview.py		jalview.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
links2fasta.py		links2fasta.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali2bootstrap.py		mali2bootstrap.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali2cleaned_mali.py		mali2cleaned_mali.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali2kaks.py		mali2kaks.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali2mali.py		mali2mali.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali2malis.py		mali2malis.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali2predictions.py		mali2predictions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali2rates.py		mali2rates.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali2summary.py		mali2summary.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali2table.py		mali2table.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali_evaluate.py		mali_evaluate.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali_extract.py		mali_extract.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali_phylip2fasta.py		mali_phylip2fasta.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali_plain2aln.py		mali_plain2aln.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
mali_remove_gaps.py		mali_remove_gaps.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
malis2mali.py		malis2mali.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
malis2malis.py		malis2malis.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
malis2masks.py		malis2masks.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
malis2profiles.py		malis2profiles.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
map_residues.py		map_residues.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
matrix2tree.py		matrix2tree.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
nr2table.py		nr2table.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_analyze_cluster_expansion.py		optic_analyze_cluster_expansion.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_analyze_clustering.py		optic_analyze_clustering.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_analyze_duplications.py		optic_analyze_duplications.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_analyze_genes.py		optic_analyze_genes.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_analyze_genetrees.py		optic_analyze_genetrees.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_analyze_multiple_orthologs.py		optic_analyze_multiple_orthologs.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_analyze_orthology.py		optic_analyze_orthology.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_analyze_orthology_multiple.py		optic_analyze_orthology_multiple.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_analyze_orthology_pairwise.py		optic_analyze_orthology_pairwise.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_analyze_ribosomes.py		optic_analyze_ribosomes.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_analyze_sites_slr.py		optic_analyze_sites_slr.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_analyze_synteny.py		optic_analyze_synteny.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_annotate_clusters.py		optic_annotate_clusters.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_cdhit2clusters.py		optic_cdhit2clusters.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_cds2codons.py		optic_cds2codons.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_check_blast_run.py		optic_check_blast_run.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_clade_export.py		optic_clade_export.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_clone_run.py		optic_clone_run.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_compare_projects.py		optic_compare_projects.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_components2clusters.py		optic_components2clusters.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_count_orgs.py		optic_count_orgs.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_diff_gff.py		optic_diff_gff.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_evaluate_bootstrap.py		optic_evaluate_bootstrap.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_evaluate_mali.py		optic_evaluate_mali.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_evaluate_trees.py		optic_evaluate_trees.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_export_clade_data.py		optic_export_clade_data.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_filter_paralogous_links.py		optic_filter_paralogous_links.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_links2exons.py		optic_links2exons.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_orthologs2genes.py		optic_orthologs2genes.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_orthologs2list.py		optic_orthologs2list.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_orthologs2transcripts.py		optic_orthologs2transcripts.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_plot_duplications.py		optic_plot_duplications.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_plot_multiple_synteny.py		optic_plot_multiple_synteny.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_plot_synteny.py		optic_plot_synteny.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_prune_multiple_alignment.py		optic_prune_multiple_alignment.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_regions2gff.py		optic_regions2gff.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_regions2graph.py		optic_regions2graph.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_regions2predictions.py		optic_regions2predictions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_transcripts2links.py		optic_transcripts2links.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_update_blast.py		optic_update_blast.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
optic_update_orthology.py		optic_update_orthology.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
peptides2cds.py		peptides2cds.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
psl2predictions.py		psl2predictions.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
radar.py		radar.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
rates2rates.py		rates2rates.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
sequence2alignment.py		sequence2alignment.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
sequences2graph.py		sequences2graph.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
sequences2mali.py		sequences2mali.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
tree2matrix.py		tree2matrix.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
tree2patterns.py		tree2patterns.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
tree2plot.py		tree2plot.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
tree2stats.py		tree2stats.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
tree2svg.py		tree2svg.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
tree2taxa.py		tree2taxa.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
tree2tree.py		tree2tree.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
tree_collapse_species.py		tree_collapse_species.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
tree_diff.py		tree_diff.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
tree_map_leaves.py		tree_map_leaves.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
tree_species2genes.py		tree_species2genes.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
tree_strain2species.py		tree_strain2species.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
trees2sets.py		trees2sets.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
trees2tree.py		trees2tree.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
trees2trees.py		trees2trees.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
test_scripts.py		test_scripts.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
test_style.py		test_style.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
test_tree_strain2species.py		test_tree_strain2species.py	transfer of files from cgat and CGATPipelines repositories	Sep 8, 2015
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