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k-mer length greater than 31 #51

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zulal-b opened this issue Jan 28, 2025 · 0 comments
Open

k-mer length greater than 31 #51

zulal-b opened this issue Jan 28, 2025 · 0 comments

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@zulal-b
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zulal-b commented Jan 28, 2025

Hello,
Is it possible to build indexes with k-mer length greater than 31?
Twopaco allows building graphs with k-mer length greater than 31 by modifying "MAX_CAPACITY" defined in the header "vertexenumerator.h"
But pufferfish uses compact_vector package in graphdump, which gives an error sourcing from compact_vector.hpp::361

I was wondering if there is a workaround to make this possible.

best

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