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<!DOCTYPE html>
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<title>Nagarajan Lab @ Genome Institute of Singapore</title>
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<li><a href="computational_genomics.html">Computational Genomics</a></li>
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<li><b>Niranjan Nagarajan (Principal Investigator)</b></li>
<li>B.A. in Computer Sci. & Mathematics (<a href="http://www.owu.edu">Ohio Wesleyan</a>, 2000)</li>
<li>Ph.D. in <a href="http://www.cs.cornell.edu">Comp. Sci.</a> (<a href="http://www.cornell.edu">Cornell Univ.</a>, 2006; Advisor: <a href="http://www.maths.usyd.edu.au/u/uri/">Uri Keich</a>)</li>
<li>Postdoctoral Fellowship in <a href="http://www.cbcb.umd.edu">CBCB</a> (UMD, Advisor: <a href="http://www.cbcb.umd.edu/~mpop/">Mihai Pop</a>)</li>
<li>Profiles: <a href="https://scholar.google.com/citations?user=s65iHisAAAAJ&hl=en">Google Scholar</a>, <a href="https://sg.linkedin.com/in/niranjan-nagarajan-765151ba">LinkedIn</a></li>
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<img src="img/people/denis.jpg" height="140" width="140" class="pull-left" alt="" />
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<li><b>Denis Bertrand (Staff Scientist)</b></li>
<li>M.S. in Computer Sci. (<a href="http://www.fdsweb.univ-montp2.fr/">UM2</a>, 2002)</li>
<li>Ph.D. in <a href="http://www.lirmm.fr/lirmm_eng">Comp. Biol.</a> (<a href="http://www.fdsweb.univ-montp2.fr">UM2</a>, 2005; Advisor: <a href="https://research.pasteur.fr/en/member/olivier-gascuel/">Olivier Gascuel</a>)</li>
<li>Postdoctoral Fellowship in <a href="http://en.diro.umontreal.ca/home/">DIRO</a> (<a href="http://www.umontreal.ca/english/index.html">UDM</a>, Advisor: <a href="http://www.iro.umontreal.ca/~mabrouk/index-anglais.html">Nadia El-Mabrouk</a>)</li>
<li>Profiles: <a href="https://scholar.google.fr/citations?hl=fr&user=s31gtXkAAAAJ&sortby=pubdate">Google Scholar</a></li>
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<li><b>Davide Verzotto (Post-doctoral Fellow)</b></li>
<li>B.S. and M.S. in Computer. Sci. & Eng. (<a href="http://www.unipd.it">Univ. of Padova</a>, 2006 and 2008)</li>
<li>Ph.D. in <a href="http://www.dei.unipd.it">Information Eng.</a> (<a href="http://www.unipd.it">Univ. of Padova</a>, 2012; Advisor: <a href="http://www.dei.unipd.it/~ciompin">Matteo Comin</a>)</li>
<li>Profiles: <a href="https://scholar.google.com.sg/citations?user=QBQR50sAAAAJ&hl=en">Google Scholar</a>, <a href="https://www.linkedin.com/in/davideverzotto">LinkedIn</a>, <a href="https://twitter.com/davideverzotto">Twitter</a></li>
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<img src="img/people/tarini.jpg" height="140" width="140" class="pull-left" alt="" />
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<li><b>Tarini Ghosh (Post-doctoral Fellow)</b> </li>
<li>B. Tech in Biotechnology (<a href="http://www.iitkgp.ac.in/">IIT, Kharagpur</a>, 2004)</li>
<li>M. Tech in Biological Sciences</a> (<a href="http://www.iitk.ac.in/">IIT, Kanpur</a>, 2007)</li>
<li>Ph.D in Biotechnology and Bioinformatics</a> (<a href="http://www.uohyd.ac.in/">University of Hyderabad</a>, 2014)</li>
<li>Profiles: <a href="https://scholar.google.com.sg/citations?user=bAUS2DsAAAAJ&hl=en">Google Scholar</a></li>
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<img src="img/people/chenhao.jpg" height="140" width="140" class="pull-left" alt="" />
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<li><b>Li Chenhao (Graduate Student)</b></li>
<li>B.S. (Hons.) in Comp. Biol. (<a href="http://www.nus.edu.sg/">NUS</a>, 2014)</li>
<li>Ph.D. in Computer Sci., (<a href="http://www.comp.nus.edu.sg/">NUS SoC</a>, 2015-present)</li>
</ul>
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<img src="img/people/nok.jpg" height="140" width="140" class="pull-left" alt="" />
<ul style="list-style-type:none">
<li><b>Suphavilai Chayaporn (Graduate Student)</b></li>
<li>B.S. in Computer Sci. (<a href="http://www.ku.ac.th/">Kasetsart University</a>, 2011)</li>
<li>M.S. in Computer Sci. (<a href="http://cs.iupui.edu/">Purdue University</a>, 2014)</li>
<li>Ph.D. in Computer Sci. (<a href="http://www.comp.nus.edu.sg/">NUS SoC</a>, 2015-present) </li>
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<img src="img/people/amanda.jpg" height="140" width="140" class="pull-left" alt="" />
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<li><b>Ng Hui Qi Amanda (Research Officer)</b><li>
<li>B.S. (Hons.) in Biological Sci. (<a href="http://www.ntu.edu.sg/Pages/home.aspx">NTU</a>, 2013)</li>
</ul>
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<img src="img/people/esther.png" height="140" width="140" class="pull-left" alt="" />
<ul style="list-style-type:none">
<li><b>Boey Jia Hui Esther (Research Officer)</b><li>
<li>B.S. in Biochemistry & Microbiology (<a href=”http://www.bsc.unimelb.edu.au”>University of Melbourne</a>, 2009)</li>
<li>B.S. (Hons.) in Biochemistry & Molecular Biology (<a href=”http://www.bsc.unimelb.edu.au/biochemistry-molecular-biology”>University of Melbourne</a>, 2010)</li>
<li>Profiles: <a href=”https://www.linkedin.com/in/esther-boey-278b4751”>LinkedIn</a>, <a href=”https://www.researchgate.net/profile/Esther_Boey”>ResearchGate</a></li>
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<img src="img/people/jayce.jpg" height="140" width="140" class="pull-left" alt="" />
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<li><b>Koh Jia Yu Jayce (Bioinformatics Analyst)</b></li>
<li>B.Eng. in Bioengineering (<a href="http://www.nus.edu.sg/">NUS</a>, 2010)</li>
<li>M.S. in Statistics (<a href="http://www.nus.edu.sg">NUS</a>, 2013)</li>
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<li><b>Gao Song (Graduate Student)</b></li>
<li>Current Position: <a href="https://www.sahmri.com/our-research/themes/heart-health/theme/our-team/dr-song-gao" target="_blank">EMBL Australia post-doctoral researcher</a></li>
</ul>
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<img src="img/people/andreas.jpg" height="100" width="100" class="pull-left" alt="" />
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<li><b>Andreas Wilm (Post-doctoral Fellow)</b></li>
<li>Current Position: <a href="https://scholar.google.com/citations?user=V8Ueo9cAAAAJ" target="_blank">Team Leader (RPD, GIS)</a></li>
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<img src="img/people/scholar.jpg" height="100" width="100" class="pull-left" alt="" />
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<li><b>Chng Kern Rei (Research Fellow)</b><br/></li>
<li>Current Position: MOHH</li>
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<li><b><a href="http://cgs.csail.mit.edu/team/" target="_blank">Grace Yeo</a></b></li>
<li>B.S. in Johns Hopkins; PhD in MIT</li>
</ul>
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<img src="img/people/scholar.jpg" height="70" width="70" class="pull-left">
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<li><b>Sibyl Drissler</b></li>
<li>Univ. of British Columbia</li>
</ul>
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<img src="img/people/ankica.jpg" height="70" width="70" class="pull-left">
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<li><b>Ankica Gogić</b></li>
<li>Univ. of Zagreb</li>
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<img src="img/people/vinutha.jpg" height="70" width="70" class="pull-left">
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<li><b>Vinutha Kukkilaya</b></li>
<li>NTU Masters</li>
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<h6>SPLASH Graphical Abstract (Aw et al, 2016)</h6><img src="img/graphical abstracts/SPLASH graphical abstract.jpg" heigh="400" width="400">
<h6>PARTE Graphical Abstract (Wan et al, 2012)</h6><img src="img/graphical abstracts/PARTE graphical abstract.jpg" heigh="400" width="400">
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<h4>Post-doctoral Fellowship in RNA Structural
Genomics</h4>
We are seeking highly qualified computational
scientists with expertise/interest in RNA structure
and biology. The Nagarajan Lab, in collaboration
with the Wan Lab at the Genome Institute of
Singapore are looking for applicants to direct
collaborative projects involving the development of
new algorithms and the analyis of novel
high-throughput, genome-scale RNA structure
datasets. Successfull candidates will work in a
highly inter-disciplinary environment to apply
cutting edge techniques in computational and
experimental genomics for achieving breakthrough
discoveries that significantly advance human health
and well-being.<br>
<br>RNA structure is fundamental to its function in
almost every cellular process and for understanding
disease biology. We have developed new approaches to
probe RNA secondary and tertiary structure
genome-wide [1-4] and are applying these for a range
of applications including (i) identification of new
targets for developing antibiotics against extremely
drug-resistant pathogens (ii) understanding
host-microbial interactions in diseases and (iii)
identifying structural switches that control gene
regulation during stem-cell differentiation and
oncogenesis. We are seeking exceptional researchers
who will join us in leveraging this unique
opportunity for significant basic and translational
advances in RNA genomics.<br>
<br>
<h6>References</h6>
<ol>
<li>Kertesz M*, Wan Y*, Mazor E, Rinn JL, Nutter RC, Chang HY, Segal E "Genome-wide measurement of RNA secondary structure in yeast." Nature 2010 Sep 2 ; 467(7311) : 103-7</li>
<li>Wan Y, Qu K, Ouyang Z, Kertesz M, Li J, Tibshirani R, Makino DL, Nutter RC, Segal E, Chang HY "Genome-wide measurement of RNA folding energies." Mol Cell 2012 Oct 26 ; 48(2) : 169-81 Epub 2012 Sep 13</li>
<li>Wan Y.*, Qu K.*, Zhang QF, Manor O, Ouyang Z, Zhang J, Snyder MP, Segal E and Chang HY "Landscape and variation of RNA secondary structure across the human transcriptome." Nature 2014 ; 505, 706–709</li>
<li>Aw JG, Shen Y, Wilm A, Sun M, Lim XN, Boon KL, Tapsin S, Chan YS, Tan CP, Sim AY, Zhang T, Susanto TT, Fu Z, Nagarajan N#, Wan Y# "In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation." Mol Cell 2016 May 19 ; 62(4) : 603-17 Epub 2016 May 12</li>
</ol>
<br>
<h6>Qualifications</h6>
<ul>
<li>PhD in Computational Biology/Computer Science/Applied Mathematics/Genomics</li>
<li>Strong analytical and programming skills (C/C++, perl/python, UNIX environment). Candidates with significant experience in RNA structure prediction will be strongly preferred.</li>
</ul>
<br>
<b>How To Apply:</b> E-mail cover letter, research statement, curriculum vitae, and contact details of at least three referees to Niranjan Nagarajan (<a href="mailto:[email protected]">[email protected]</a>) and Wan Yue (<a href="mailto:[email protected]">[email protected]</a>)
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<strong>Nagarajan Lab</strong><br>
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<li><a href="https://www.a-star.edu.sg/gis/our-people/investigator-details.aspx?source=faculty_member&user_id=130">Niranjan Nagarajan's GIS page</a></li>
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<li><a href="https://www.a-star.edu.sg/imb/Research/tid/33/Hair-and-Skin-Health.aspx">Dr. Tom Dawson</a></li>
<li><a href="https://www.a-star.edu.sg/imb/Research/tid/29/Skin-Barrier.aspx">Dr. John Common</a></li>
<li><a href="http://www.pharmacy.nus.edu.sg/staff/phaccye/">Dr. Eric Chan</a></li>
<li><a href="https://www.ttsh.com.sg/patient-guide/find-care/specialists/page.aspx?spid=199">Dr. Barnaby Young</a></li>
<li><a href="https://www.a-star.edu.sg/gis/our-people/investigator-details.aspx?source=gis_fellows&user_id=147">Dr. Yue Wan</a></li>
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