v1.3.0

What's Changed

• Add gradient to uniform distribution by @chaozg in #526
• Fix typo (PCN intead of pCN in experimental) in BayesianProblem by @chaozg in #534
• update NUTS acc rate list update by @amal-ghamdi in #536
• fix NUTS acceptance rate by @amal-ghamdi in #539
• add test for counting accepted samples in NUTS by @amal-ghamdi in #540
• Checkpointing nuts by @amal-ghamdi in #530
• Display acc rate on progress bar by @chaozg in #533
• update links in README by @chaozg in #523
• Remove pre_sample, pre_warmup from NUTS and fix warning by @amal-ghamdi in #545
• Add demos for use of truncated Normal by @chaozg in #549
• Add (iid) truncated normal and also add grad to normal by @chaozg in #542
• Add ADMM + parameter reordering FISTA by @jeverink in #553
• creation of a MYULAnew class by @remilaumont in #407
• remove file added by mistake by @amal-ghamdi in #565
• Update repr method in Sampler class by @amal-ghamdi in #566
• Add AffineModel by @siljachr in #486
• fix copy, prior name in MYULA + docs artifacts by @amal-ghamdi in #567
• Add how-to on Image2D by @chaozg in #572
• Regularized Gaussian extension: TV by @jeverink in #564
• Add support for algebra by @nabriis in #583
• Make the interface of restorator more robust by @chaozg in #589
• Add random variable class by @nabriis in #597
• Refine existing solvers by @chaozg in #598
• add implementation of _ProductGeometry by @amal-ghamdi in #593
• Add support for conditioning on random variables by @nabriis in #600
• Use scipy.optimize.lsq_linear in RegularizedLinearRTO for nonnegativity by @chaozg in #602
• Update _geometry.py with correct link to howto on image2d by @nabriis in #590
• Regularized Gaussian: TV with Gibbs by @jeverink in #587
• Add sample method to RV by @nabriis in #603
• Regularized Gaussian: Combined regularized and constraint presets by @jeverink in #612
• Add rv method to Distribution class and update artifact version by @chaozg in #611

New Contributors

• @remilaumont made their first contribution in #407
• @siljachr made their first contribution in #486

Full Changelog: v1.2.0...v1.3.0

v1.2.0

What's Changed

• Ensure constants are stored in densities when reducing to single density in joint distribution by @nabriis in #482
• Replace progressbar2 by tqdm by @chaozg in #502
• Fix plot of 1D geometries by @chaozg in #497
• Add 479 experimental module in bayesian problem by @nabriis in #500
• move tqdm from requirement-dev to requirements by @chaozg in #510
• Improve (hopefully) how HybridGibbs uses samplers state and history by @nabriis in #503
• Update documentation by @chaozg in #508
• Update documentation on experimental mcmc module by @nabriis in #513
• Add prefix to sampling progress by @nabriis in #520
• Update example in HybridGibbs by @nabriis in #521
• Fix issue of invalid proposals being accepted by @chaozg in #518

Full Changelog: v1.1.1...v1.2.0

v1.1.1

What's Changed

• Remove postfix New (only) from sampler names by @chaozg in #477
• update installation instructions and use with vscode by @chaozg in #480
• Fix HybridGibbs using initial point from sampling strategy by @nabriis in #484
• Add repr method for cuqi samples by @chaozg in #472
• Sprint34 add 1D, 2D utility plot function by @amal-ghamdi in #491

Full Changelog: v1.1.0...v1.1.1

v1.1.0

What's Changed

• Sampler rework via MCMC module (experimental module) by @chaozg in #356
• Make progressbar2 dependency not explicit by @nabriis in #385
• Sampler rework ULANew by @chaozg in #380
• Sampler rework: refactor CWMH sampler by @amal-ghamdi in #376
• fix arviz import by @amal-ghamdi in #396
• Sampler rework LinearRTONew and RegularizedLinearRTONew by @chaozg in #382
• Implement get_state, set_state, get_history, set_history in base class. by @nabriis in #390
• Sampler rework: NUTS by @amal-ghamdi in #387
• TEST: Sampler rework ugla 2 by @amal-ghamdi in #411
• Sampler rework UGLA by @chaozg in #405
• reduce time on zexperimental tests by @chaozg in #416
• Let Gaussian accept LinearOperator represented sqrtprec by @chaozg in #420
• Add tune to pCN and rename pCN to PCN by @chaozg in #418
• Allow samplers to be initialized without target by @nabriis in #408
• Add Gibbs sampler by @nabriis in #409
• Add (Hybrid) Gibbs sampler by @nabriis in #425
• Regularized Gaussian extension: ModifiedHalfNormal by @jeverink in #429
• Find valid samplers by @jeverink in #446
• Regularized Gaussian extension: RegularizedUniform and Constraints/Nonnegative Gaussian/GMRF alternatives by @jeverink in #430
• Add SmoothedLaplace by @chaozg in #450
• General grad check in userdefined distribution by @amal-ghamdi in #457
• Improve Conjugacy safety and flexibility by adding more validation by @nabriis in #444
• Conjugacy safety and flexibility by @jeverink in #359
• correct math display error in smoothed Laplace by @chaozg in #459

Full Changelog: v1.0.0...v1.1.0

v1.0.0

What's Changed

• Allow lazy import of arviz by @nabriis in #327
• Refactor GMRF and remove physical dim parameter by @nabriis in #333
• Fix missing cookie png by @nabriis in #336
• update plot_ci to make it more general by @amal-ghamdi in #338
• Fix bug in distribution gallery by @chaozg in #340
• Trivial fix to improve FD gradient computation performance by @amal-ghamdi in #353
• Implemented Implicited Regularized Gaussians by @jeverink in #291
• Make Gamma distribution multivariate by @nabriis in #358
• Sprint27 beta grad by @amal-ghamdi in #363
• Distributions: Disable conditioning on mutable variables if not conditioning variable by @nabriis in #361

New Contributors

• @jeverink made their first contribution in #291

Full Changelog: v0.8.0...v1.0.0

v0.8.0

What's Changed

• rename precision from Laplace distribution to scale by @chaozg in #308
• Add feature request template by @nabriis in #315
• Add bug report template by @nabriis in #311

Full Changelog: v0.7.0...v0.8.0

v0.7.0

What's Changed

• change developers to maintainers by @chaozg in #288
• change get_components to regular method by @chaozg in #302
• Bump minimum supported python version, add latest python versions to testing and update maintainers in toml by @nabriis in #306
• fix get_indirect_variables as suggested in issue #289 by @chaozg in #309
• update demos/demo35_FD_gradient.py to test NUTS and ULA with FD approximated gradients by @chaozg in #307

Full Changelog: v0.6.0...v0.7.0

v0.6.0

What's Changed

• Sprint20 fix warnings by @amal-ghamdi in #270
• add ability to store run diagnostics for inspection (NUTS sampler) by @amal-ghamdi in #260
• Sprint20 fix geom multiplot by @amal-ghamdi in #271
• Add cookie phantom and update Deconvolution2D to use cuqi.data by @nabriis in #275
• rename Linear_RTO to LinearRTO by @amal-ghamdi in #284
• Fix 277 update readme and landing page by @nabriis in #285
• Add list of developers by @chaozg in #287

New Contributors

• @chaozg made their first contribution in #287

Full Changelog: v0.5.0...v0.6.0

v0.5.0

What's Changed

• Sprint19 time sol pde by @amal-ghamdi in #224
• Update failing unit tests by @nabriis in #252
• Sprint20 fix detect cond dist by @nabriis in #249
• Use geometry to define shape of distributions by @nabriis in #246
• Sprint19 plot variance (generalize to more geometries) by @amal-ghamdi in #214
• Sprint20 uq plot by @amal-ghamdi in #256
• Sprint20 update cont2d geom by @amal-ghamdi in #257
• Sprint20 enable nb in uq by @amal-ghamdi in #263
• fix output of model by @amal-ghamdi in #265

Full Changelog: v0.4.0...v0.5.0

v0.4.0

What's Changed

• Add Cauchy Distribution by @nabriis in #199
• Use scipy minimize solver for most problems solving for MAP by @nabriis in #201
• Rename Unadjusted Laplace Approximation sampler to UGLA by @nabriis in #217
• Add exact keyword to plot trace by @nabriis in #218
• fixed fail 2 issue number 181 by @Karl-JT in #220
• Update printing by @amal-ghamdi in #222
• Add links to plugins in CUQIpy documentation by @amal-ghamdi in #221
• Add Jacobian matrix option to Model by @nabriis in #216
• Rename diff distributions to MRF by @nabriis in #229
• Rename _1D naming scheme to just 1D by @nabriis in #240
• Rename MetropolisHasting to MH by @nabriis in #230

New Contributors

• @Karl-JT made their first contribution in #220

Full Changelog: v0.3.0...v0.4.0