calc-coverage.yml

on: [push, pull_request]

name: calc-coverage

jobs:
  calc-coverage:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
         # - {os: windows-latest, r: 'release'}
         # - {os: macOS-latest, r: 'release'}
          - {os: ubuntu-18.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
         # - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: ${{ matrix.config.rspm }}

    steps:
      - uses: actions/checkout@v2

      - uses: r-lib/actions/setup-r@master
        with:
          r-version: ${{ matrix.config.r }}

      - uses: r-lib/actions/setup-pandoc@v1

      - name: Get admb and put in path
        run: |
          wget https://github.com/admb-project/admb/releases/download/admb-12.2/admb-12.2-linux.zip
          sudo unzip admb-12.2-linux.zip -d /usr/local/bin
          sudo chmod 755 /usr/local/bin/admb-12.2/bin/admb
          rm admb-12.2-linux.zip
          echo "/usr/local/bin/admb-12.2/bin" >> $GITHUB_PATH

# for some reason need a comment here to pass syntax check

      - name: Query dependencies
        run: |
         install.packages('remotes')
          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

      - name: Cache R packages
        if: runner.os != 'Windows'
        uses: actions/cache@v2
        with:
         path: ${{ env.R_LIBS_USER }}
         key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
         restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

      - name: Install system dependencies
        if: runner.os == 'Linux'
        run: |
          while read -r cmd
          do
            eval sudo $cmd
          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "18.04"))')
#

      - name: Install dependencies
        run: |
          remotes::install_deps(dependencies = TRUE)
          remotes::install_cran("covr")
        shell: Rscript {0}

      - name: Test coverage
        run: covr::codecov()
        shell: Rscript {0}