get_coverage.yml

# Calculates new coverage for the base branch and uploads to codecov
name: Coverage
on:
  push:
    branches:
      - master

jobs:
  calc_coverage:
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v4

      - name: "get tags"
        run: |
          git fetch --tags --force # Retrieve annotated tags.

      - uses: mamba-org/setup-micromamba@v1
        with:
          micromamba-version: '1.5.8-0' # versions: https://github.com/mamba-org/micromamba-releases
          environment-file: environment.yml
          init-shell: >-
            bash
            powershell
          cache-environment: true
          post-cleanup: 'all'

      # Not sure why this is needed but it appears to be the case
      - name: fix env
        shell: bash -l {0}
        run: | 
          micromamba shell init --shell bash --root-prefix=~/micromamba
          eval "$(micromamba shell hook --shell bash)"
          micromamba activate dascore

      - name: install dascore
        shell: bash -l {0}
        run: |
          python -m pip install -e .[test]

      - name: run test suite
        shell: bash -l {0}
        run: |
          pytest -s --cov dascore --cov-report=xml

      - uses: codecov/codecov-action@v4
        with:
          fail_ci_if_error: true
          files: ./coverage.xml
          flags: unittests # optional
          name: master_tests # optional
          token: ${{ secrets.CODECOV_TOKEN }} # required