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Description
Program appears to start working then fails with errors:
INFO:kalasiris.kalasiris:segment from=MyWorkDir/M105939370LE.lev1.cub nl=30000 overlap=0 -pref=$ISISROOT/IsisPreferences
INFO:kalasiris.kalasiris:segment from=MyWorkDir/M1120292097RE.lev1.cub nl=30000 overlap=0 -pref=$ISISROOT/IsisPreferences
INFO:kalasiris.kalasiris:segment from=MyWorkDir/M1342772956LE.lev1.cub nl=30000 overlap=0 -pref=$ISISROOT/IsisPreferences
INFO:kalasiris.kalasiris:segment from=MyWorkDir/M1133330211LE.lev1.cub nl=30000 overlap=0 -pref=$ISISROOT/IsisPreferences
INFO:kalasiris.kalasiris:segment from=MyWorkDir/M1342772956RE.lev1.cub nl=30000 overlap=0 -pref=$ISISROOT/IsisPreferences
INFO:kalasiris.kalasiris:segment from=MyWorkDir/M1130970104LE.lev1.cub nl=30000 overlap=0 -pref=$ISISROOT/IsisPreferences
INFO:kalasiris.kalasiris:segment from=MyWorkDir/M1133330211RE.lev1.cub nl=30000 overlap=0 -pref=$ISISROOT/IsisPreferences
Had an ISIS error:
segment from=MyWorkDir/M1133330211LE.lev1.cub nl=30000 overlap=0 -pref=$ISISROOT/IsisPreferences
**PROGRAMMER ERROR** Isis child process failed to communicate with parent.
Had an ISIS error:
segment from=MyWorkDir/M1133330211RE.lev1.cub nl=30000 overlap=0 -pref=$ISISROOT/IsisPreferences
**PROGRAMMER ERROR** Isis child process failed to communicate with parent.
Had an ISIS error:
segment from=MyWorkDir/M1342772956RE.lev1.cub nl=30000 overlap=0 -pref=$ISISROOT/IsisPreferences
**PROGRAMMER ERROR** Isis child process failed to communicate with parent.
This is repeated for every image in the fromlist, then
Traceback (most recent call last):
File "/usgs/cpkgs/anaconda3_linux/envs/isis9.0.0_RC1/bin/findFeaturesSegment.py", line 447, in <module>
raise e
^^^^^^^
File "/usgs/cpkgs/anaconda3_linux/envs/isis9.0.0_RC1/bin/findFeaturesSegment.py", line 443, in <module>
findFeaturesSegment(ui, workdir)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usgs/cpkgs/anaconda3_linux/envs/isis9.0.0_RC1/bin/findFeaturesSegment.py", line 341, in findFeaturesSegment
output = output.get()
^^^^^^^^^^^^
File "/usgs/cpkgs/isis3/anaconda3_linux/envs/isis9.0.0_RC1/lib/python3.11/multiprocessing/pool.py", line 774, in get
raise self._value
File "/usgs/cpkgs/isis3/anaconda3_linux/envs/isis9.0.0_RC1/lib/python3.11/multiprocessing/pool.py", line 125, in worker
result = (True, func(*args, **kwds))
^^^^^^^^^^^^^^^^^^^
File "/usgs/cpkgs/isis3/anaconda3_linux/envs/isis9.0.0_RC1/lib/python3.11/multiprocessing/pool.py", line 51, in starmapstar
return list(itertools.starmap(args[0], args[1]))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usgs/cpkgs/anaconda3_linux/envs/isis9.0.0_RC1/bin/findFeaturesSegment.py", line 147, in segment
raise err
File "/usgs/cpkgs/anaconda3_linux/envs/isis9.0.0_RC1/bin/findFeaturesSegment.py", line 114, in segment
ret = kisis.segment(work_img, nl=nlines, overlap=0, pref__="$ISISROOT/IsisPreferences")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usgs/cpkgs/isis3/anaconda3_linux/envs/isis9.0.0_RC1/lib/python3.11/site-packages/kalasiris/kalasiris.py", line 195, in isis_fn
return _run_isis_program(cmd, subprocess_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usgs/cpkgs/isis3/anaconda3_linux/envs/isis9.0.0_RC1/lib/python3.11/site-packages/kalasiris/kalasiris.py", line 140, in _run_isis_program
return subprocess.run(cmd, **subprocess_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usgs/cpkgs/isis3/anaconda3_linux/envs/isis9.0.0_RC1/lib/python3.11/subprocess.py", line 571, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['segment', 'from=MyWorkDir/M1133330211LE.lev1.cub', 'nl=30000', 'overlap=0', '-pref=$ISISROOT/IsisPreferences']' returned non-zero exit status 3.
How to reproduce
Running under my work users area Isis3Tests/FFSegmentScript/Git5655/I900RC1/
Note that the match file and all of the images in fromlist exist in the directory below where I am running things. The workdir exists. Running on an astrovm.
My understanding is nothing has changed with the script and this worked before, albeit with some issues (#5655) that have not been addressed (I think, not sure).
The text was updated successfully, but these errors were encountered:
ISIS version(s) affected: 9.0.0-RC1
Description
Program appears to start working then fails with errors:
This is repeated for every image in the fromlist, then
How to reproduce
Running under my work users area Isis3Tests/FFSegmentScript/Git5655/I900RC1/
Command line:
findFeaturesSegment.py algorithm=fast/brief maxthreads=7 workdir=MyWorkDir match=../Lev1/M108313384RE.lev1.cub fromlist=M108313384RE_fromlist_ff.lis fastgeom=true geomtype=camera maxpoints=10000 epitolerance=9.0 ratio=0.9 hmgtolerance=9.0 filter=sobel networkid=M108313384RE pointid='M108313384RE_ff_?????' onet=M108313384RE_ff.net tolist=M108313384RE_cubes_ff.lis tonotmatched=M108313384RE_notmatched_ff.lis description='Create image-image control network' debug=true debuglog=M108313384RE_ff.log
Note that the match file and all of the images in fromlist exist in the directory below where I am running things. The workdir exists. Running on an astrovm.
My understanding is nothing has changed with the script and this worked before, albeit with some issues (#5655) that have not been addressed (I think, not sure).
The text was updated successfully, but these errors were encountered: