diff --git a/run_fastsurfer.sh b/run_fastsurfer.sh index ebed4eb2..16cd5726 100755 --- a/run_fastsurfer.sh +++ b/run_fastsurfer.sh @@ -37,6 +37,7 @@ reconsurfdir="$FASTSURFER_HOME/recon_surf" # Regular flags defaults subject="" +sd="$SUBJECTS_DIR" t1="" t2="" merged_segfile=""