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CLO_import.owl
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<?xml version="1.0"?>
<!DOCTYPE rdf:RDF [
<!ENTITY efo "http://www.ebi.ac.uk/efo/" >
<!ENTITY foaf "http://xmlns.com/foaf/0.1/" >
<!ENTITY owl "http://www.w3.org/2002/07/owl#" >
<!ENTITY cellline "http://www.ebi.ac.uk/cellline/" >
<!ENTITY obo "http://purl.obolibrary.org/obo/" >
<!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
<!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
<!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
<!ENTITY oboInOwl "http://www.geneontology.org/formats/oboInOwl#" >
]>
<rdf:RDF xmlns="&obo;ego/CLO_import.owl#"
xml:base="&obo;ego/CLO_import.owl"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:efo="http://www.ebi.ac.uk/efo/"
xmlns:cellline="http://www.ebi.ac.uk/cellline/">
<owl:Ontology rdf:about="&obo;ego/CLO_import.owl"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000179 -->
<owl:AnnotationProperty rdf:about="&obo;BFO_0000179">
<rdfs:label xml:lang="en">BFO OWL specification label</rdfs:label>
<obo:IAO_0000232 xml:lang="en">Really of interest to developers only</obo:IAO_0000232>
<obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="&rdfs;label"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000180 -->
<owl:AnnotationProperty rdf:about="&obo;BFO_0000180">
<rdfs:label xml:lang="en">BFO CLIF specification label</rdfs:label>
<obo:IAO_0000119>Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">Really of interest to developers only</obo:IAO_0000232>
<obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="&rdfs;label"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000111">
<rdfs:label>editor preferred term</rdfs:label>
<rdfs:label xml:lang="en">editor preferred label</rdfs:label>
<rdfs:label xml:lang="en">editor preferred term</rdfs:label>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">editor preferred label</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">editor preferred term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000112">
<rdfs:label xml:lang="en">example of usage</rdfs:label>
<obo:IAO_0000115 xml:lang="en">A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">example</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">example of usage</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000114">
<rdfs:label xml:lang="en">has curation status</rdfs:label>
<obo:IAO_0000119 xml:lang="en">OBI_0000281</obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">has curation status</obo:IAO_0000111>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000115">
<rdfs:label rdf:datatype="&xsd;string">definition</rdfs:label>
<rdfs:label rdf:datatype="&xsd;string">textual definition</rdfs:label>
<rdfs:label>definition</rdfs:label>
<rdfs:label xml:lang="en">definition</rdfs:label>
<obo:IAO_0000111>definition</obo:IAO_0000111>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000116">
<rdfs:label rdf:datatype="&xsd;string">editor note</rdfs:label>
<rdfs:label xml:lang="en">editor note</rdfs:label>
<oboInOwl:is_metadata_tag rdf:datatype="&xsd;integer">1</oboInOwl:is_metadata_tag>
<oboInOwl:hasDbXref rdf:datatype="&xsd;string">IAO:0000116</oboInOwl:hasDbXref>
<oboInOwl:id rdf:datatype="&xsd;string">editor_note</oboInOwl:id>
<oboInOwl:shorthand rdf:datatype="&xsd;string">editor_note</oboInOwl:shorthand>
<oboInOwl:hasOBONamespace rdf:datatype="&xsd;string">uberon</oboInOwl:hasOBONamespace>
<obo:IAO_0000115 xml:lang="en">An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obfoundry.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000117">
<rdfs:label xml:lang="en">term editor</rdfs:label>
<obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.</obo:IAO_0000116>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000115 xml:lang="en">Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">term editor</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000118">
<rdfs:label xml:lang="en">alternative term</rdfs:label>
<obo:IAO_0000115 xml:lang="en">An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">alternative term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000119">
<rdfs:label xml:lang="en">definition source</rdfs:label>
<obo:IAO_0000119 rdf:datatype="&xsd;string">Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">definition source</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007</obo:IAO_0000115>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000232">
<rdfs:label rdf:datatype="&xsd;string">curator notes</rdfs:label>
<rdfs:label xml:lang="en">curator note</rdfs:label>
<oboInOwl:is_metadata_tag rdf:datatype="&xsd;integer">1</oboInOwl:is_metadata_tag>
<oboInOwl:hasDbXref rdf:datatype="&xsd;string">IAO:0000232</oboInOwl:hasDbXref>
<oboInOwl:id rdf:datatype="&xsd;string">curator_notes</oboInOwl:id>
<oboInOwl:shorthand rdf:datatype="&xsd;string">curator_notes</oboInOwl:shorthand>
<oboInOwl:hasOBONamespace rdf:datatype="&xsd;string">uberon</oboInOwl:hasOBONamespace>
<obo:IAO_0000115 xml:lang="en">An administrative note of use for a curator but of no use for a user</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">curator note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000412">
<rdfs:label>imported from</rdfs:label>
<rdfs:label xml:lang="en">imported from</rdfs:label>
<obo:IAO_0000115 xml:lang="en">For external terms/classes, the ontology from which the term was imported</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">imported from</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000424 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000424"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000600 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000600">
<rdfs:label xml:lang="en">elucidation</rdfs:label>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000601 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000601">
<rdfs:label xml:lang="en">has associated axiom(nl)</rdfs:label>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000602 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000602">
<rdfs:label xml:lang="en">has associated axiom(fol)</rdfs:label>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000001 -->
<owl:AnnotationProperty rdf:about="&obo;UBPROP_0000001">
<rdfs:label rdf:datatype="&xsd;string">external_definition</rdfs:label>
<oboInOwl:is_metadata_tag rdf:datatype="&xsd;integer">1</oboInOwl:is_metadata_tag>
<obo:IAO_0000115 rdf:datatype="&xsd;string">An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class.</obo:IAO_0000115>
<rdfs:comment rdf:datatype="&xsd;string">This annotation property may be replaced with an annotation property from an external ontology such as IAO</rdfs:comment>
<oboInOwl:hasDbXref rdf:datatype="&xsd;string">UBPROP:0000001</oboInOwl:hasDbXref>
<oboInOwl:shorthand rdf:datatype="&xsd;string">external_definition</oboInOwl:shorthand>
<oboInOwl:id rdf:datatype="&xsd;string">external_definition</oboInOwl:id>
<oboInOwl:hasOBONamespace rdf:datatype="&xsd;string">uberon</oboInOwl:hasOBONamespace>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000008 -->
<owl:AnnotationProperty rdf:about="&obo;UBPROP_0000008">
<rdfs:label rdf:datatype="&xsd;string">taxon_notes</rdfs:label>
<oboInOwl:is_metadata_tag rdf:datatype="&xsd;integer">1</oboInOwl:is_metadata_tag>
<obo:IAO_0000115 rdf:datatype="&xsd;string">Notes on the how instances of this class vary across species.</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="&xsd;string">UBPROP:0000008</oboInOwl:hasDbXref>
<oboInOwl:shorthand rdf:datatype="&xsd;string">taxon_notes</oboInOwl:shorthand>
<oboInOwl:id rdf:datatype="&xsd;string">taxon_notes</oboInOwl:id>
<oboInOwl:hasOBONamespace rdf:datatype="&xsd;string">uberon</oboInOwl:hasOBONamespace>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000012 -->
<owl:AnnotationProperty rdf:about="&obo;UBPROP_0000012">
<rdfs:label rdf:datatype="&xsd;string">external_ontology_notes</rdfs:label>
<oboInOwl:is_metadata_tag rdf:datatype="&xsd;integer">1</oboInOwl:is_metadata_tag>
<obo:IAO_0000115 rdf:datatype="&xsd;string">Notes on how similar or equivalent classes are represented in other ontologies.</obo:IAO_0000115>
<obo:IAO_0000116 rdf:datatype="&xsd;string">This annotation property may be replaced with an annotation property from an external ontology such as IAO</obo:IAO_0000116>
<oboInOwl:hasDbXref rdf:datatype="&xsd;string">UBPROP:0000012</oboInOwl:hasDbXref>
<oboInOwl:shorthand rdf:datatype="&xsd;string">external_ontology_notes</oboInOwl:shorthand>
<oboInOwl:id rdf:datatype="&xsd;string">external_ontology_notes</oboInOwl:id>
<oboInOwl:hasOBONamespace rdf:datatype="&xsd;string">uberon</oboInOwl:hasOBONamespace>
</owl:AnnotationProperty>
<!-- http://www.ebi.ac.uk/cellline/definition -->
<owl:AnnotationProperty rdf:about="&cellline;definition"/>
<!-- http://www.ebi.ac.uk/cellline/definition_editor -->
<owl:AnnotationProperty rdf:about="&cellline;definition_editor"/>
<!-- http://www.geneontology.org/formats/oboInOwl#created_by -->
<owl:AnnotationProperty rdf:about="&oboInOwl;created_by"/>
<!-- http://www.geneontology.org/formats/oboInOwl#creation_date -->
<owl:AnnotationProperty rdf:about="&oboInOwl;creation_date"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasBroadSynonym">
<rdfs:label rdf:datatype="&xsd;string">has_broad_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasDbXref">
<rdfs:label rdf:datatype="&xsd;string">database_cross_reference</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasExactSynonym">
<rdfs:label rdf:datatype="&xsd;string">has_exact_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasOBONamespace -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasOBONamespace">
<rdfs:label rdf:datatype="&xsd;string">has_obo_namespace</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasRelatedSynonym">
<rdfs:label rdf:datatype="&xsd;string">has_related_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#id -->
<owl:AnnotationProperty rdf:about="&oboInOwl;id"/>
<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
<owl:AnnotationProperty rdf:about="&oboInOwl;inSubset">
<rdfs:label rdf:datatype="&xsd;string">in_subset</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#is_metadata_tag -->
<owl:AnnotationProperty rdf:about="&oboInOwl;is_metadata_tag"/>
<!-- http://www.geneontology.org/formats/oboInOwl#shorthand -->
<owl:AnnotationProperty rdf:about="&oboInOwl;shorthand">
<rdfs:label rdf:datatype="&xsd;string">shorthand</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<owl:AnnotationProperty rdf:about="&rdfs;label">
<rdfs:label>label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://xmlns.com/foaf/0.1/depicted_by -->
<owl:AnnotationProperty rdf:about="&foaf;depicted_by">
<rdfs:label rdf:datatype="&xsd;string">depicted_by</rdfs:label>
<oboInOwl:is_metadata_tag rdf:datatype="&xsd;integer">1</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand rdf:datatype="&xsd;string">foaf-depicted_by</oboInOwl:shorthand>
<oboInOwl:id rdf:datatype="&xsd;string">foaf-depicted_by</oboInOwl:id>
<oboInOwl:hasOBONamespace rdf:datatype="&xsd;string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:hasDbXref rdf:resource="&foaf;depicted_by"/>
</owl:AnnotationProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000050">
<rdf:type rdf:resource="&owl;TransitiveProperty"/>
<rdfs:label rdf:datatype="&xsd;string">part_of</rdfs:label>
<rdfs:label xml:lang="en">part of</rdfs:label>
<oboInOwl:shorthand rdf:datatype="&xsd;string">part_of</oboInOwl:shorthand>
<obo:IAO_0000412 rdf:resource="&obo;BFO"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000051"/>
<rdfs:subPropertyOf rdf:resource="&obo;RO_0002131"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000051">
<rdf:type rdf:resource="&owl;TransitiveProperty"/>
<rdfs:label xml:lang="en">has part</rdfs:label>
<oboInOwl:shorthand rdf:datatype="&xsd;string">has_part</oboInOwl:shorthand>
<obo:IAO_0000111 xml:lang="en">has part</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">has_part</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="&obo;BFO"/>
<rdfs:subPropertyOf rdf:resource="&obo;RO_0002131"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;uberon.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000052 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000052">
<rdf:type rdf:resource="&owl;FunctionalProperty"/>
<rdfs:label xml:lang="en">inheres in</rdfs:label>
<oboInOwl:shorthand rdf:datatype="&xsd;string">inheres_in</oboInOwl:shorthand>
<owl:inverseOf rdf:resource="&obo;BFO_0000053"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000053 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000053">
<rdfs:label xml:lang="en">bearer of at some time</rdfs:label>
<rdfs:label xml:lang="en">is bearer of</rdfs:label>
<obo:IAO_0000116>Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'bearer of at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'bearer of@en'(x,y,t)</obo:IAO_0000116>
<obo:IAO_0000116>BFO2 Reference: independent continuant that is not a spatial region</obo:IAO_0000116>
<obo:BFO_0000180>bearerOfAt</obo:BFO_0000180>
<obo:IAO_0000602>(iff (bearerOfAt a b t) (and (specificallyDependsOnAt b a t) (IndependentContinuant a) (not (SpatialRegion a)) (existsAt b t))) // axiom label in BFO2 CLIF: [053-004] </obo:IAO_0000602>
<obo:IAO_0000115 xml:lang="en">b bearer_of c at t =Def. c s-depends_on b at t & b is an independent continuant that is not a spatial region. (axiom label in BFO2 Reference: [053-004])</obo:IAO_0000115>
<obo:BFO_0000179>bearer-of_st</obo:BFO_0000179>
<obo:IAO_0000116>BFO2 Reference: specifically dependent continuant</obo:IAO_0000116>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000125"/>
<obo:IAO_0000412 rdf:resource="&obo;bfo.owl"/>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000054 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000054">
<rdfs:label xml:lang="en">is realized by</rdfs:label>
<rdfs:label xml:lang="en">realized in</rdfs:label>
<obo:BFO_0000180>realizedIn</obo:BFO_0000180>
<obo:BFO_0000179>realized-in</obo:BFO_0000179>
<obo:IAO_0000600>[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x y z t) (if (and (RealizableEntity x) (Process y) (realizesAt y x t) (bearerOfAt z x t)) (hasParticipantAt y z t))) // axiom label in BFO2 CLIF: [106-002] </obo:IAO_0000602>
<obo:IAO_0000601 xml:lang="en">if a realizable entity b is realized in a process p, then p stands in the has_participant relation to the bearer of b. (axiom label in BFO2 Reference: [106-002])</obo:IAO_0000601>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000055 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000055">
<rdfs:label xml:lang="en">realizes</rdfs:label>
<obo:IAO_0000602>(forall (x y t) (if (realizesAt x y t) (and (Process x) (or (Disposition y) (Role y)) (exists (z) (and (MaterialEntity z) (hasParticipantAt x z t) (bearerOfAt z y t)))))) // axiom label in BFO2 CLIF: [059-003] </obo:IAO_0000602>
<obo:BFO_0000179>realizes</obo:BFO_0000179>
<obo:BFO_0000180>realizes</obo:BFO_0000180>
<obo:IAO_0000600 xml:lang="en">to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])</obo:IAO_0000600>
<owl:inverseOf rdf:resource="&obo;BFO_0000054"/>
<obo:IAO_0000412 rdf:resource="&obo;bfo.owl"/>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000056 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000056">
<rdfs:label rdf:datatype="&xsd;string">participates_in</rdfs:label>
<rdfs:label xml:lang="en">participates in</rdfs:label>
<oboInOwl:shorthand rdf:datatype="&xsd;string">participates_in</oboInOwl:shorthand>
<obo:IAO_0000111 xml:lang="en">participates in</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">participates_in</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;uberon.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000057 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000057">
<rdfs:label xml:lang="en">has participant</rdfs:label>
<oboInOwl:shorthand rdf:datatype="&xsd;string">has_participant</oboInOwl:shorthand>
<obo:IAO_0000111 xml:lang="en">has participant</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">has_participant</obo:IAO_0000118>
<owl:inverseOf rdf:resource="&obo;BFO_0000056"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="&obo;BFO_0000055"/>
<rdf:Description rdf:about="&obo;BFO_0000052"/>
</owl:propertyChainAxiom>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000125 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000125">
<rdfs:label xml:lang="en">has specific dependent at some time</rdfs:label>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] a shape s-depends_on the shaped object</obo:IAO_0000112>
<obo:BFO_0000179>has-s-dep_st</obo:BFO_0000179>
<obo:IAO_0000600>[copied from inverse property 'specifically depends on at some time'] To say that b s-depends_on a at t is to say that b and c do not share common parts & b is of its nature such that it cannot exist unless c exists & b is not a boundary of c and b is not a site of which c is the host [64</obo:IAO_0000600>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of a process on something: an instance of seeing (a relational process) s-depends_on some organism and on some seen entity, which may be an occurrent or a continuant</obo:IAO_0000112>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] the one-sided dependence of an occurrent on an independent continuant: football match on the players, the ground, the ball</obo:IAO_0000112>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] a gait s-depends_on the walking object. (All at some specific time.)</obo:IAO_0000112>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] A pain s-depends_on the organism that is experiencing the pain</obo:IAO_0000112>
<obo:IAO_0000116>[copied from inverse property 'specifically depends on at some time'] BFO 2 Reference: the relation of s-depends_on does not in every case require simultaneous existence of its relata. Note the difference between such cases and the cases of continuant universals defined historically: the act of answering depends existentially on the prior act of questioning; the human being who was baptized or who answered a question does not himself depend existentially on the prior act of baptism or answering. He would still exist even if these acts had never taken place.</obo:IAO_0000116>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of paying cash to a merchant in exchange for a bag of figs</obo:IAO_0000112>
<obo:IAO_0000116>[copied from inverse property 'specifically depends on at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'specifically depends on at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'specifically depends on@en'(x,y,t)</obo:IAO_0000116>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of hitting a ball with a cricket bat</obo:IAO_0000112>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] the one-sided dependence of an occurrent on an independent continuant: handwave on a hand</obo:IAO_0000112>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] reciprocal s-dependence between occurrents: in a game of chess the process of playing with the white pieces is mutually dependent on the process of playing with the black pieces</obo:IAO_0000112>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] the two-sided reciprocal s-dependence of the roles of husband and wife [20</obo:IAO_0000112>
<obo:IAO_0000116>[copied from inverse property 'specifically depends on at some time'] BFO2 Reference: specifically dependent continuant\; process; process boundary</obo:IAO_0000116>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] the three-sided reciprocal s-dependence of the hue, saturation and brightness of a color [45</obo:IAO_0000112>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] reciprocal s-dependence between occurrents: a process of buying and the associated process of selling</obo:IAO_0000112>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] the three-sided reciprocal s-dependence of the pitch, timbre and volume of a tone [45</obo:IAO_0000112>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] reciprocal s-dependence between occurrents: a process of increasing the volume of a portion of gas while temperature remains constant and the associated process of decreasing the pressure exerted by the gas</obo:IAO_0000112>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of a dependent continuant on an independent continuant: an instance of temperature s-depends_on some organism</obo:IAO_0000112>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of one occurrent on another: a process of obeying a command is dependent on a prior process of issuing a command</obo:IAO_0000112>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of a process on something: a process of cell death s-depends_on a cell</obo:IAO_0000112>
<obo:IAO_0000116>[copied from inverse property 'specifically depends on at some time'] BFO 2 Reference: S-dependence is just one type of dependence among many; it is what, in the literature, is referred to as ‘existential dependence’ [87, 46, 65, 20</obo:IAO_0000116>
<obo:IAO_0000116>[copied from inverse property 'specifically depends on at some time'] BFO 2 Reference: An entity – for example an act of communication or a game of football – can s-depends_on more than one entity. Complex phenomena for example in the psychological and social realms (such as inferring, commanding and requesting) or in the realm of multi-organismal biological processes (such as infection and resistance), will involve multiple families of dependence relations, involving both continuants and occurrents [1, 4, 28</obo:IAO_0000116>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of a dependent continuant on an independent continuant: an instance of headache s-depends_on some head</obo:IAO_0000112>
<obo:IAO_0000112>[copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of one occurrent on another: a process of answering a question is dependent on a prior process of asking a question</obo:IAO_0000112>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/CLO_0000167 -->
<owl:ObjectProperty rdf:about="&obo;CLO_0000167">
<rdfs:label xml:lang="en">has disease</rdfs:label>
<obo:IAO_0000117>Jie Zheng, Yongqun He, Yu Lin, Allen Xiang</obo:IAO_0000117>
<rdfs:domain rdf:resource="&obo;OBI_0100026"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<rdfs:range rdf:resource="&efo;EFO_0000408"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000293 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000293">
<rdfs:label xml:lang="en">has_specified_input</rdfs:label>
<obo:IAO_0000116 rdf:datatype="&xsd;string">8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.</obo:IAO_0000116>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Larry Hunter</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Melanie Coutot</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">has_specified_input</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">see is_input_of example_of_usage</obo:IAO_0000112>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000057"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000295 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000295">
<rdfs:label xml:lang="en">is_specified_input_of</rdfs:label>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">is_specified_input_of</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay</obo:IAO_0000112>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000056"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000299 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000299">
<rdfs:label xml:lang="en">has_specified_output</rdfs:label>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Larry Hunter</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">has_specified_output</obo:IAO_0000111>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000057"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000643 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000643">
<rdfs:label rdf:datatype="&xsd;string">has grain</rdfs:label>
<obo:IAO_0000119 rdf:datatype="&xsd;string">PAPER: Granularity, scale and collectivity: When size does and does not matter, Alan Rector, Jeremy Rogers, Thomas Bittner, Journal of Biomedical Informatics 39 (2006) 333-349</obo:IAO_0000119>
<obo:IAO_0000111 rdf:datatype="&xsd;string">has grain</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="&xsd;string">the relation of the cells in the finger of the skin to the finger, in which an indeterminate number of grains are parts of the whole by virtue of being grains in a collective that is part of the whole, and in which removing one granular part does not nec- essarily damage or diminish the whole. Ontological Whether there is a fixed, or nearly fixed number of parts - e.g. fingers of the hand, chambers of the heart, or wheels of a car - such that there can be a notion of a single one being missing, or whether, by contrast, the number of parts is indeterminate - e.g., cells in the skin of the hand, red cells in blood, or rubber molecules in the tread of the tire of the wheel of the car.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Discussion in Karslruhe with, among others, Alan Rector, Stefan Schulz, Marijke Keet, Melanie Courtot, and Alan Ruttenberg. Definition take from the definition of granular parthood in the cited paper. Needs work to put into standard form</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000051"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001000 -->
<owl:ObjectProperty rdf:about="&obo;RO_0001000">
<rdfs:label rdf:datatype="&xsd;string">derives_from</rdfs:label>
<rdfs:label xml:lang="en">derives from</rdfs:label>
<rdfs:comment>Original def from OBO_REL: instance level derives_from holds between distinct material continuants when one succeeds the other across a temporal divide in such a way that at least a biologically significant portion of the matter of the earlier continuant is inherited by the later</rdfs:comment>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<rdfs:subPropertyOf rdf:resource="&owl;topObjectProperty"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002131 -->
<owl:ObjectProperty rdf:about="&obo;RO_0002131">
<rdfs:label xml:lang="en">overlaps</rdfs:label>
<obo:IAO_0000424>http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)</obo:IAO_0000424>
<obo:IAO_0000115>x overlaps y if and only if there exists some z such that x has part z and z part of y</obo:IAO_0000115>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;uberon.owl"/>
<rdfs:subPropertyOf rdf:resource="&owl;topObjectProperty"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="&obo;BFO_0000051"/>
<rdf:Description rdf:about="&obo;RO_0002131"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="&obo;BFO_0000051"/>
<rdf:Description rdf:about="&obo;BFO_0000050"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="&obo;RO_0002131"/>
<rdf:Description rdf:about="&obo;BFO_0000050"/>
</owl:propertyChainAxiom>
</owl:ObjectProperty>
<!-- http://www.w3.org/2002/07/owl#topObjectProperty -->
<owl:ObjectProperty rdf:about="&owl;topObjectProperty">
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000001 -->
<owl:Class rdf:about="&obo;BFO_0000001">
<rdfs:label xml:lang="en">entity</rdfs:label>
<obo:BFO_0000179>entity</obo:BFO_0000179>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81</obo:IAO_0000116>
<obo:BFO_0000180>Entity</obo:BFO_0000180>
<obo:IAO_0000600 xml:lang="en">An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])</obo:IAO_0000600>
<obo:IAO_0000116 xml:lang="en">Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf</obo:IAO_0000116>
<obo:IAO_0000112 xml:lang="en">Julius Caesar</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">Verdi’s Requiem</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the Second World War</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">your body mass index</obo:IAO_0000112>
<obo:IAO_0000412 rdf:resource="&obo;BFO"/>
<obo:IAO_0000412 rdf:resource="&obo;bfo.owl"/>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000002 -->
<owl:Class rdf:about="&obo;BFO_0000002">
<rdfs:label xml:lang="en">continuant</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000001"/>
<obo:BFO_0000179>continuant</obo:BFO_0000179>
<obo:BFO_0000180>Continuant</obo:BFO_0000180>
<obo:IAO_0000602>(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] </obo:IAO_0000602>
<obo:IAO_0000600 xml:lang="en">A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])</obo:IAO_0000600>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants</obo:IAO_0000116>
<obo:IAO_0000601 xml:lang="en">if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])</obo:IAO_0000601>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000003 -->
<owl:Class rdf:about="&obo;BFO_0000003">
<rdfs:label xml:lang="en">occurrent</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000001"/>
<obo:IAO_0000602>(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] </obo:IAO_0000602>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region</obo:IAO_0000116>
<obo:IAO_0000116>Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.</obo:IAO_0000116>
<obo:IAO_0000602>(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] </obo:IAO_0000602>
<obo:IAO_0000600 xml:lang="en">An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])</obo:IAO_0000600>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.</obo:IAO_0000116>
<obo:BFO_0000180>Occurrent</obo:BFO_0000180>
<obo:IAO_0000116 xml:lang="en">Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.</obo:IAO_0000116>
<obo:IAO_0000601 xml:lang="en">b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])</obo:IAO_0000601>
<obo:BFO_0000179>occurrent</obo:BFO_0000179>
<obo:IAO_0000601 xml:lang="en">Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])</obo:IAO_0000601>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000004 -->
<owl:Class rdf:about="&obo;BFO_0000004">
<rdfs:label xml:lang="en">independent continuant</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000002"/>
<obo:BFO_0000180>IndependentContinuant</obo:BFO_0000180>
<obo:IAO_0000602>(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] </obo:IAO_0000602>
<obo:IAO_0000601 xml:lang="en">For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])</obo:IAO_0000601>
<obo:BFO_0000179>ic</obo:BFO_0000179>
<obo:IAO_0000602>(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] </obo:IAO_0000602>
<obo:IAO_0000601 xml:lang="en">For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])</obo:IAO_0000601>
<obo:IAO_0000112 xml:lang="en">a chair</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a heart</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a leg</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a molecule</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a spatial region</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an atom</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an orchestra.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an organism</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])</obo:IAO_0000115>
<obo:IAO_0000112 xml:lang="en">the bottom right portion of a human torso</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of your mouth</obo:IAO_0000112>
<obo:IAO_0000412 rdf:resource="&obo;bfo.owl"/>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000015 -->
<owl:Class rdf:about="&obo;BFO_0000015">
<rdfs:label xml:lang="en">process</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000003"/>
<obo:BFO_0000180>Process</obo:BFO_0000180>
<obo:IAO_0000602>(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] </obo:IAO_0000602>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)</obo:IAO_0000116>
<obo:IAO_0000112 xml:lang="en">a process of cell-division, \ a beating of the heart</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a process of meiosis</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a process of sleeping</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])</obo:IAO_0000115>
<obo:BFO_0000179>process</obo:BFO_0000179>
<obo:IAO_0000112 xml:lang="en">the course of a disease</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the flight of a bird</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the life of an organism</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">your process of aging.</obo:IAO_0000112>
<obo:IAO_0000412 rdf:resource="&obo;bfo.owl"/>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000016 -->
<owl:Class rdf:about="&obo;BFO_0000016">
<rdfs:label xml:lang="en">disposition</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000017"/>
<obo:IAO_0000602>(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] </obo:IAO_0000602>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.</obo:IAO_0000116>
<obo:BFO_0000180>Disposition</obo:BFO_0000180>
<obo:IAO_0000602>(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] </obo:IAO_0000602>
<obo:BFO_0000179>disposition</obo:BFO_0000179>
<obo:IAO_0000601 xml:lang="en">If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])</obo:IAO_0000601>
<obo:IAO_0000112 xml:lang="en">an atom of element X has the disposition to decay to an atom of element Y</obo:IAO_0000112>
<obo:IAO_0000600 xml:lang="en">b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])</obo:IAO_0000600>
<obo:IAO_0000112 xml:lang="en">certain people have a predisposition to colon cancer</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">children are innately disposed to categorize objects in certain ways.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the cell wall is disposed to filter chemicals in endocytosis and exocytosis</obo:IAO_0000112>
<obo:IAO_0000412 rdf:resource="&obo;bfo.owl"/>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000017 -->
<owl:Class rdf:about="&obo;BFO_0000017">
<rdfs:label xml:lang="en">realizable entity</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000020"/>
<obo:IAO_0000602>(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] </obo:IAO_0000602>
<obo:IAO_0000601 xml:lang="en">All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])</obo:IAO_0000601>
<obo:BFO_0000180>RealizableEntity</obo:BFO_0000180>
<obo:IAO_0000600 xml:lang="en">To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])</obo:IAO_0000600>
<obo:BFO_0000179>realizable</obo:BFO_0000179>
<obo:IAO_0000112 xml:lang="en">the disposition of this piece of metal to conduct electricity.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the disposition of your blood to coagulate</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the function of your reproductive organs</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of being a doctor</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of this boundary to delineate where Utah and Colorado meet</obo:IAO_0000112>
<obo:IAO_0000412 rdf:resource="&obo;bfo.owl"/>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000020 -->
<owl:Class rdf:about="&obo;BFO_0000020">
<rdfs:label xml:lang="en">specifically dependent continuant</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000002"/>
<obo:IAO_0000602>(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] </obo:IAO_0000602>
<obo:IAO_0000602>(iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004] </obo:IAO_0000602>
<obo:BFO_0000180>SpecificallyDependentContinuant</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key</obo:IAO_0000112>
<obo:IAO_0000116 xml:lang="en">Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.</obo:IAO_0000116>
<obo:IAO_0000115 xml:lang="en">b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n &gt; 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i &lt; j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])</obo:IAO_0000115>
<obo:IAO_0000112 xml:lang="en">of one-sided specifically dependent continuants: the mass of this tomato</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.</obo:IAO_0000112>
<obo:BFO_0000179>sdc</obo:BFO_0000179>
<obo:IAO_0000112 xml:lang="en">the disposition of this fish to decay</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the function of this heart: to pump blood</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the mutual dependence of proton donors and acceptors in chemical reactions [79</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the pink color of a medium rare piece of grilled filet mignon at its center</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of being a doctor</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the shape of this hole.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the smell of this portion of mozzarella</obo:IAO_0000112>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000040 -->
<owl:Class rdf:about="&obo;BFO_0000040">
<rdfs:label xml:lang="en">material entity</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000004"/>
<obo:BFO_0000179>material</obo:BFO_0000179>
<obo:IAO_0000602>(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] </obo:IAO_0000602>
<obo:IAO_0000600 xml:lang="en">A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])</obo:IAO_0000600>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.</obo:IAO_0000116>
<obo:IAO_0000601 xml:lang="en">Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])</obo:IAO_0000601>
<obo:BFO_0000180>MaterialEntity</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">a flame</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a forest fire</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a human being</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a hurricane</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a photon</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a puff of smoke</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a sea wave</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a tornado</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an aggregate of human beings.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an energy wave</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an epidemic</obo:IAO_0000112>
<obo:IAO_0000601 xml:lang="en">every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])</obo:IAO_0000601>
<obo:IAO_0000112 xml:lang="en">the undetached arm of a human being</obo:IAO_0000112>
<obo:IAO_0000412 rdf:resource="&obo;BFO"/>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CLO_0000000 -->
<owl:Class rdf:about="&obo;CLO_0000000">
<rdfs:label>cell line cell culturing</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;OBI_0600024"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&obo;OBI_0000293"/>
<owl:someValuesFrom rdf:resource="&obo;CLO_0000031"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="&obo;OBI_0000299"/>
<owl:someValuesFrom rdf:resource="&obo;CLO_0000031"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000117>YH</obo:IAO_0000117>
<obo:IAO_0000115>a maintaining cell culture process that keeps cell line cell alive and actively cultured.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="&obo;clo.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CLO_0000001 -->