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OBI_import.owl
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<?xml version="1.0"?>
<!DOCTYPE rdf:RDF [
<!ENTITY ns "http://usefulinc.com/ns/" >
<!ENTITY foaf "http://xmlns.com/foaf/0.1/" >
<!ENTITY doap "http://usefulinc.com/ns/doap#" >
<!ENTITY owl "http://www.w3.org/2002/07/owl#" >
<!ENTITY obo "http://purl.obolibrary.org/obo/" >
<!ENTITY dc "http://purl.org/dc/elements/1.1/" >
<!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
<!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
<!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
<!ENTITY obi "http://purl.obolibrary.org/obo/obi/2015-12-07/" >
<!ENTITY protege "http://protege.stanford.edu/plugins/owl/protege#" >
]>
<rdf:RDF xmlns="&obo;obi.owl#"
xml:base="&obo;obi.owl"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:ns="http://usefulinc.com/ns/"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:doap="&ns;doap#"
xmlns:obi="&obo;obi/2015-12-07/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="&obo;obi.owl">
<owl:versionIRI rdf:resource="&obo;obi/2015-12-07/obi.owl"/>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://protege.stanford.edu/plugins/owl/protege#defaultLanguage -->
<owl:AnnotationProperty rdf:about="&protege;defaultLanguage"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000179 -->
<owl:AnnotationProperty rdf:about="&obo;BFO_0000179">
<rdfs:label xml:lang="en">BFO OWL specification label</rdfs:label>
<obo:IAO_0000111 xml:lang="en">BFO OWL specification label</obo:IAO_0000111>
<obo:IAO_0000232 xml:lang="en">Really of interest to developers only</obo:IAO_0000232>
<obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="&rdfs;label"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000180 -->
<owl:AnnotationProperty rdf:about="&obo;BFO_0000180">
<rdfs:label xml:lang="en">BFO CLIF specification label</rdfs:label>
<obo:IAO_0000119>Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000111 xml:lang="en">BFO CLIF specification label</obo:IAO_0000111>
<obo:IAO_0000232 xml:lang="en">Really of interest to developers only</obo:IAO_0000232>
<obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="&rdfs;label"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000111">
<rdfs:label>editor preferred term</rdfs:label>
<rdfs:label>editor preferred term~editor preferred label</rdfs:label>
<rdfs:label xml:lang="en">editor preferred label</rdfs:label>
<rdfs:label xml:lang="en">editor preferred term</rdfs:label>
<obo:IAO_0000111>editor preferred term~editor preferred label</obo:IAO_0000111>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)</obo:IAO_0000115>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000112">
<rdfs:label xml:lang="en">example of usage</rdfs:label>
<obo:IAO_0000115 xml:lang="en">A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">example of usage</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000114">
<rdfs:label xml:lang="en">has curation status</rdfs:label>
<obo:IAO_0000119 xml:lang="en">OBI_0000281</obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">has curation status</obo:IAO_0000111>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000115">
<rdfs:label rdf:datatype="&xsd;string">definition</rdfs:label>
<rdfs:label rdf:datatype="&xsd;string">textual definition</rdfs:label>
<rdfs:label>definition</rdfs:label>
<rdfs:label xml:lang="en">definition</rdfs:label>
<obo:IAO_0000111>definition</obo:IAO_0000111>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000116">
<rdfs:label xml:lang="en">editor note</rdfs:label>
<obo:IAO_0000115 xml:lang="en">An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obfoundry.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000117">
<rdfs:label xml:lang="en">term editor</rdfs:label>
<obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.</obo:IAO_0000116>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000115 xml:lang="en">Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">term editor</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000118">
<rdfs:label xml:lang="en">alternative term</rdfs:label>
<obo:IAO_0000115 xml:lang="en">An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">alternative term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000119">
<rdfs:label xml:lang="en">definition source</rdfs:label>
<obo:IAO_0000119 rdf:datatype="&xsd;string">Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">definition source</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007</obo:IAO_0000115>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000232">
<rdfs:label xml:lang="en">curator note</rdfs:label>
<obo:IAO_0000115 xml:lang="en">An administrative note of use for a curator but of no use for a user</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">curator note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000412">
<rdfs:label xml:lang="en">imported from</rdfs:label>
<obo:IAO_0000115 xml:lang="en">For external terms/classes, the ontology from which the term was imported</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">imported from</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000600 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000600">
<rdfs:label xml:lang="en">elucidation</rdfs:label>
<obo:IAO_0000119 xml:lang="en">Person:Barry Smith</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms</obo:IAO_0000600>
<obo:IAO_0000111 xml:lang="en">elucidation</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000601 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000601">
<rdfs:label xml:lang="en">has associated axiom(nl)</rdfs:label>
<obo:IAO_0000600 xml:lang="en">An axiom associated with a term expressed using natural language</obo:IAO_0000600>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">has associated axiom(nl)</obo:IAO_0000111>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000602 -->
<owl:AnnotationProperty rdf:about="&obo;IAO_0000602">
<rdfs:label xml:lang="en">has associated axiom(fol)</rdfs:label>
<obo:IAO_0000600 xml:lang="en">An axiom expressed in first order logic using CLIF syntax</obo:IAO_0000600>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">has associated axiom(fol)</obo:IAO_0000111>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0001847 -->
<owl:AnnotationProperty rdf:about="&obo;OBI_0001847">
<rdfs:label xml:lang="en">ISA alternative term</rdfs:label>
<obo:IAO_0000119>ISA tools project (http://isa-tools.org)</obo:IAO_0000119>
<obo:IAO_0000117>Person: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">ISA alternative term</obo:IAO_0000111>
<obo:IAO_0000117>Person: Alejandra Gonzalez-Beltran</obo:IAO_0000117>
<obo:IAO_0000115>An alternative term used by the ISA tools project (http://isa-tools.org).</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="&obo;IAO_0000118"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OBI_9991118 -->
<owl:AnnotationProperty rdf:about="&obo;OBI_9991118">
<rdfs:label rdf:datatype="&xsd;string">IEDB alternative term</rdfs:label>
<obo:IAO_0000115 rdf:datatype="&xsd;string">An alternative term used by the IEDB.</obo:IAO_0000115>
<obo:IAO_0000119 rdf:datatype="&xsd;string">IEDB</obo:IAO_0000119>
<obo:IAO_0000111 rdf:datatype="&xsd;string">IEDB alternative term</obo:IAO_0000111>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON:Randi Vita, Jason Greenbaum, Bjoern Peters</obo:IAO_0000117>
<rdfs:subPropertyOf rdf:resource="&obo;IAO_0000118"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001900 -->
<owl:AnnotationProperty rdf:about="&obo;RO_0001900">
<rdfs:label xml:lang="en">temporal interpretation</rdfs:label>
<foaf:page rdf:datatype="&xsd;anyURI">https://code.google.com/p/obo-relations/wiki/ROAndTime</foaf:page>
<foaf:page rdf:datatype="&xsd;anyURI">https://github.com/oborel/obo-relations/wiki/ROAndTime</foaf:page>
<obo:IAO_0000111 xml:lang="en">temporal interpretation</obo:IAO_0000111>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/contributor -->
<owl:AnnotationProperty rdf:about="&dc;contributor">
<rdfs:label>Contributor</rdfs:label>
<rdfs:label xml:lang="en-us">Contributor</rdfs:label>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/creator -->
<owl:AnnotationProperty rdf:about="&dc;creator">
<rdfs:label>Creator</rdfs:label>
<rdfs:label xml:lang="en-us">Creator</rdfs:label>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/date -->
<owl:AnnotationProperty rdf:about="&dc;date">
<rdfs:label>Date</rdfs:label>
<rdfs:label xml:lang="en-us">Date</rdfs:label>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/description -->
<owl:AnnotationProperty rdf:about="&dc;description">
<rdfs:label>Description</rdfs:label>
<rdfs:label xml:lang="en-us">Description</rdfs:label>
<rdfs:comment xml:lang="en-us">An account of the content of the resource.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/format -->
<owl:AnnotationProperty rdf:about="&dc;format">
<rdfs:label>Format</rdfs:label>
<rdfs:label xml:lang="en-us">Format</rdfs:label>
<rdfs:comment xml:lang="en-us">The physical or digital manifestation of the resource.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/source -->
<owl:AnnotationProperty rdf:about="&dc;source">
<rdfs:label>Source</rdfs:label>
<rdfs:label xml:lang="en-us">Source</rdfs:label>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/subject -->
<owl:AnnotationProperty rdf:about="&dc;subject">
<rdfs:label>Subject and Keywords</rdfs:label>
<rdfs:label xml:lang="en-us">Subject and Keywords</rdfs:label>
<rdfs:comment xml:lang="en-us">The topic of the content of the resource.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/title -->
<owl:AnnotationProperty rdf:about="&dc;title">
<rdfs:label>Title</rdfs:label>
<rdfs:label xml:lang="en-us">Title</rdfs:label>
<rdfs:comment xml:lang="en-us">A name given to the resource.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
</owl:AnnotationProperty>
<!-- http://usefulinc.com/ns/doap#file-release -->
<owl:AnnotationProperty rdf:about="&ns;doap#file-release"/>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<owl:AnnotationProperty rdf:about="&rdfs;label">
<rdfs:label>label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2002/07/owl#versionInfo -->
<owl:AnnotationProperty rdf:about="&owl;versionInfo"/>
<!-- http://xmlns.com/foaf/0.1/page -->
<owl:AnnotationProperty rdf:about="&foaf;page"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000051">
<rdf:type rdf:resource="&owl;TransitiveProperty"/>
<rdfs:label xml:lang="en">has part</rdfs:label>
<obo:IAO_0000116 xml:lang="en">Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
<obo:IAO_0000115 xml:lang="en">a core relation that holds between a whole and its part</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">has part</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">has_part</obo:IAO_0000118>
<obo:IAO_0000112 xml:lang="en">my body has part my brain (continuant parthood, two material entities)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this year has part this day (occurrent parthood)</obo:IAO_0000112>
<obo:RO_0001900 rdf:resource="&obo;RO_0001901"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000054 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000054">
<rdfs:label xml:lang="en">realized in</rdfs:label>
<rdfs:comment>Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process</rdfs:comment>
<obo:IAO_0000600 xml:lang="en">[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])</obo:IAO_0000600>
<obo:IAO_0000118 xml:lang="en">is realized by</obo:IAO_0000118>
<obo:IAO_0000111 xml:lang="en">realized in</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">realized_in</obo:IAO_0000118>
<obo:IAO_0000112 xml:lang="en">this disease is realized in this disease course</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this fragility is realized in this shattering</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this investigator role is realized in this investigation</obo:IAO_0000112>
<rdfs:range rdf:resource="&obo;BFO_0000015"/>
<rdfs:domain rdf:resource="&obo;BFO_0000017"/>
<owl:inverseOf rdf:resource="&obo;BFO_0000055"/>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000055 -->
<owl:ObjectProperty rdf:about="&obo;BFO_0000055">
<rdfs:label xml:lang="en">realizes</rdfs:label>
<rdfs:comment>Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process</rdfs:comment>
<obo:IAO_0000111 xml:lang="en">realizes</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this disease course realizes this disease</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this investigation realizes this investigator role</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this shattering realizes this fragility</obo:IAO_0000112>
<obo:IAO_0000600 xml:lang="en">to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])</obo:IAO_0000600>
<rdfs:domain rdf:resource="&obo;BFO_0000015"/>
<rdfs:range rdf:resource="&obo;BFO_0000017"/>
<rdfs:isDefinedBy rdf:resource="&obo;iao.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000136 -->
<owl:ObjectProperty rdf:about="&obo;IAO_0000136">
<rdfs:label xml:lang="en">is about</rdfs:label>
<obo:IAO_0000119 xml:lang="en">Smith, Ceusters, Ruttenberg, 2000 years of philosophy</obo:IAO_0000119>
<obo:IAO_0000112 xml:lang="en">This document is about information artifacts and their representations</obo:IAO_0000112>
<obo:IAO_0000111 xml:lang="en">is about</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">is_about is a (currently) primitive relation that relates an information artifact to an entity.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:domain rdf:resource="&obo;IAO_0000030"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000125"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000293 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000293">
<rdfs:label xml:lang="en">has_specified_input</rdfs:label>
<obo:IAO_0000116 rdf:datatype="&xsd;string">8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.</obo:IAO_0000116>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Larry Hunter</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Melanie Coutot</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">has_specified_input</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">see is_input_of example_of_usage</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:domain rdf:resource="&obo;OBI_0000011"/>
<owl:inverseOf rdf:resource="&obo;OBI_0000295"/>
<rdfs:subPropertyOf rdf:resource="&obo;RO_0000057"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000295 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000295">
<rdfs:label xml:lang="en">is_specified_input_of</rdfs:label>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">is_specified_input_of</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:range rdf:resource="&obo;OBI_0000011"/>
<rdfs:subPropertyOf rdf:resource="&obo;RO_0000056"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000299 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000299">
<rdfs:label xml:lang="en">has_specified_output</rdfs:label>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Larry Hunter</obo:IAO_0000117>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">has_specified_output</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:domain rdf:resource="&obo;OBI_0000011"/>
<owl:inverseOf rdf:resource="&obo;OBI_0000312"/>
<rdfs:subPropertyOf rdf:resource="&obo;RO_0000057"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000312 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000312">
<rdfs:label xml:lang="en">is_specified_output_of</rdfs:label>
<obo:IAO_0000117 rdf:datatype="&xsd;string">PERSON:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000115 xml:lang="en">A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000111 xml:lang="en">is_specified_output_of</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:range rdf:resource="&obo;OBI_0000011"/>
<rdfs:subPropertyOf rdf:resource="&obo;RO_0000056"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000417 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000417">
<rdfs:label rdf:datatype="&xsd;string">achieves_planned_objective</rdfs:label>
<obo:IAO_0000112 rdf:datatype="&xsd;string">A cell sorting process achieves the objective specification 'material separation objective'</obo:IAO_0000112>
<obo:IAO_0000117 rdf:datatype="&xsd;string">BP, AR, PPPB branch</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="&xsd;string">PPPB branch derived</obo:IAO_0000119>
<obo:IAO_0000115 rdf:datatype="&xsd;string">This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process.</obo:IAO_0000115>
<obo:IAO_0000111 rdf:datatype="&xsd;string">achieves_planned_objective</obo:IAO_0000111>
<obo:IAO_0000232 rdf:datatype="&xsd;string">modified according to email thread from 1/23/09 in accordince with DT and PPPB branch</obo:IAO_0000232>
<rdfs:range rdf:resource="&obo;IAO_0000005"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
<rdfs:domain rdf:resource="&obo;OBI_0000011"/>
<owl:inverseOf rdf:resource="&obo;OBI_0000833"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000643 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000643">
<rdfs:label rdf:datatype="&xsd;string">has grain</rdfs:label>
<obo:IAO_0000119 rdf:datatype="&xsd;string">PAPER: Granularity, scale and collectivity: When size does and does not matter, Alan Rector, Jeremy Rogers, Thomas Bittner, Journal of Biomedical Informatics 39 (2006) 333-349</obo:IAO_0000119>
<obo:IAO_0000111 rdf:datatype="&xsd;string">has grain</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="&xsd;string">the relation of the cells in the finger of the skin to the finger, in which an indeterminate number of grains are parts of the whole by virtue of being grains in a collective that is part of the whole, and in which removing one granular part does not nec- essarily damage or diminish the whole. Ontological Whether there is a fixed, or nearly fixed number of parts - e.g. fingers of the hand, chambers of the heart, or wheels of a car - such that there can be a notion of a single one being missing, or whether, by contrast, the number of parts is indeterminate - e.g., cells in the skin of the hand, red cells in blood, or rubber molecules in the tread of the tire of the wheel of the car.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Discussion in Karslruhe with, among others, Alan Rector, Stefan Schulz, Marijke Keet, Melanie Courtot, and Alan Ruttenberg. Definition take from the definition of granular parthood in the cited paper. Needs work to put into standard form</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000051"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000833 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0000833">
<rdfs:label rdf:datatype="&xsd;string">objective_achieved_by</rdfs:label>
<obo:IAO_0000115 rdf:datatype="&xsd;string">This relation obtains between a a objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process.</obo:IAO_0000115>
<obo:IAO_0000111 rdf:datatype="&xsd;string">objective_achieved_by</obo:IAO_0000111>
<obo:IAO_0000117>OBI</obo:IAO_0000117>
<obo:IAO_0000119>OBI</obo:IAO_0000119>
<rdfs:domain rdf:resource="&obo;IAO_0000005"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000122"/>
<rdfs:range rdf:resource="&obo;OBI_0000011"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0001938 -->
<owl:ObjectProperty rdf:about="&obo;OBI_0001938">
<rdfs:label>has value specification</rdfs:label>
<obo:IAO_0000117>PERSON: James A. Overton</obo:IAO_0000117>
<obo:IAO_0000115>A relation between an information content entity and a value specification that specifies its value.</obo:IAO_0000115>
<obo:IAO_0000119>OBI</obo:IAO_0000119>
<obo:IAO_0000111>has value specification</obo:IAO_0000111>
<rdfs:subPropertyOf rdf:resource="&obo;BFO_0000051"/>
<rdfs:domain rdf:resource="&obo;IAO_0000030"/>
<obo:IAO_0000114 rdf:resource="&obo;IAO_0000120"/>
<rdfs:range rdf:resource="&obo;OBI_0001933"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000052 -->
<owl:ObjectProperty rdf:about="&obo;RO_0000052">
<rdfs:label xml:lang="en">inheres in</rdfs:label>
<obo:IAO_0000116 xml:lang="en">A dependent inheres in its bearer at all times for which the dependent exists.</obo:IAO_0000116>
<obo:IAO_0000115 xml:lang="en">a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">inheres in</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">inheres_in</obo:IAO_0000118>
<obo:IAO_0000112 xml:lang="en">this fragility inheres in this vase</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this red color inheres in this apple</obo:IAO_0000112>
<owl:inverseOf rdf:resource="&obo;RO_0000053"/>
<obo:RO_0001900 rdf:resource="&obo;RO_0001901"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000053 -->
<owl:ObjectProperty rdf:about="&obo;RO_0000053">
<rdfs:label xml:lang="en">bearer of</rdfs:label>
<obo:IAO_0000116 xml:lang="en">A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.</obo:IAO_0000116>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">bearer of</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">bearer_of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">is bearer of</obo:IAO_0000118>
<obo:IAO_0000112 xml:lang="en">this apple is bearer of this red color</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this vase is bearer of this fragility</obo:IAO_0000112>
<rdfs:range rdf:resource="&obo;BFO_0000020"/>
<obo:RO_0001900 rdf:resource="&obo;RO_0001901"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000056 -->
<owl:ObjectProperty rdf:about="&obo;RO_0000056">
<rdfs:label xml:lang="en">participates in</rdfs:label>
<obo:IAO_0000115 xml:lang="en">a relation between a continuant and a process, in which the continuant is somehow involved in the process</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">participates in</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">participates_in</obo:IAO_0000118>
<obo:IAO_0000112 xml:lang="en">this blood clot participates in this blood coagulation</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this input material (or this output material) participates in this process</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this investigator participates in this investigation</obo:IAO_0000112>
<rdfs:domain rdf:resource="&obo;BFO_0000002"/>
<rdfs:range rdf:resource="&obo;BFO_0000003"/>
<owl:inverseOf rdf:resource="&obo;RO_0000057"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000057 -->
<owl:ObjectProperty rdf:about="&obo;RO_0000057">
<rdfs:label xml:lang="en">has participant</rdfs:label>
<obo:IAO_0000116 xml:lang="en">Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.</obo:IAO_0000116>
<obo:IAO_0000115 xml:lang="en">a relation between a process and a continuant, in which the continuant is somehow involved in the process</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">has participant</obo:IAO_0000111>
<dc:source>http://www.obofoundry.org/ro/#OBO_REL:has_participant</dc:source>
<obo:IAO_0000118 xml:lang="en">has_participant</obo:IAO_0000118>
<obo:IAO_0000112 xml:lang="en">this blood coagulation has participant this blood clot</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this investigation has participant this investigator</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this process has participant this input material (or this output material)</obo:IAO_0000112>
<rdfs:range rdf:resource="&obo;BFO_0000002"/>
<rdfs:domain rdf:resource="&obo;BFO_0000003"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000058 -->
<owl:ObjectProperty rdf:about="&obo;RO_0000058">
<rdfs:label xml:lang="en">is concretized as</rdfs:label>
<obo:IAO_0000112 xml:lang="en">A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants.</obo:IAO_0000115>
<obo:IAO_0000112 xml:lang="en">An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).</obo:IAO_0000112>
<obo:IAO_0000111 xml:lang="en">is concretized as</obo:IAO_0000111>
<rdfs:range rdf:resource="&obo;BFO_0000020"/>
<rdfs:domain rdf:resource="&obo;BFO_0000031"/>
<owl:inverseOf rdf:resource="&obo;RO_0000059"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000059 -->
<owl:ObjectProperty rdf:about="&obo;RO_0000059">
<rdfs:label xml:lang="en">concretizes</rdfs:label>
<obo:IAO_0000112 xml:lang="en">A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.</obo:IAO_0000115>
<obo:IAO_0000112 xml:lang="en">An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).</obo:IAO_0000112>
<obo:IAO_0000111 xml:lang="en">concretizes</obo:IAO_0000111>
<rdfs:domain rdf:resource="&obo;BFO_0000020"/>
<rdfs:range rdf:resource="&obo;BFO_0000031"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000079 -->
<owl:ObjectProperty rdf:about="&obo;RO_0000079">
<rdfs:label xml:lang="en">function of</rdfs:label>
<obo:IAO_0000116 xml:lang="en">A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists.</obo:IAO_0000116>
<obo:IAO_0000115 xml:lang="en">a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">function of</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">function_of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">is function of</obo:IAO_0000118>
<obo:IAO_0000112 xml:lang="en">this catalysis function is a function of this enzyme</obo:IAO_0000112>
<rdfs:domain rdf:resource="&obo;BFO_0000034"/>
<rdfs:subPropertyOf rdf:resource="&obo;RO_0000052"/>
<owl:inverseOf rdf:resource="&obo;RO_0000085"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000081 -->
<owl:ObjectProperty rdf:about="&obo;RO_0000081">
<rdfs:label xml:lang="en">role of</rdfs:label>
<obo:IAO_0000116 xml:lang="en">A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.</obo:IAO_0000116>
<obo:IAO_0000115 xml:lang="en">a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">is role of</obo:IAO_0000118>
<obo:IAO_0000111 xml:lang="en">role of</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">role_of</obo:IAO_0000118>
<obo:IAO_0000112 xml:lang="en">this investigator role is a role of this person</obo:IAO_0000112>
<rdfs:subPropertyOf rdf:resource="&obo;RO_0000052"/>
<owl:inverseOf rdf:resource="&obo;RO_0000087"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000085 -->
<owl:ObjectProperty rdf:about="&obo;RO_0000085">
<rdfs:label xml:lang="en">has function</rdfs:label>
<obo:IAO_0000116 xml:lang="en">A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists.</obo:IAO_0000116>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">has function</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">has_function</obo:IAO_0000118>
<obo:IAO_0000112 xml:lang="en">this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)</obo:IAO_0000112>
<rdfs:range rdf:resource="&obo;BFO_0000034"/>
<rdfs:subPropertyOf rdf:resource="&obo;RO_0000053"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000087 -->
<owl:ObjectProperty rdf:about="&obo;RO_0000087">
<rdfs:label xml:lang="en">has role</rdfs:label>
<obo:IAO_0000116 xml:lang="en">A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.</obo:IAO_0000116>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">has role</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">has_role</obo:IAO_0000118>
<obo:IAO_0000112 xml:lang="en">this person has role this investigator role (more colloquially: this person has this role of investigator)</obo:IAO_0000112>
<rdfs:domain rdf:resource="&obo;BFO_0000004"/>
<rdfs:range rdf:resource="&obo;BFO_0000023"/>
<rdfs:subPropertyOf rdf:resource="&obo;RO_0000053"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Data properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://usefulinc.com/ns/doap#revision -->
<owl:DatatypeProperty rdf:about="&ns;doap#revision">
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
<rdfs:isDefinedBy rdf:resource="&ns;doap"/>
</owl:DatatypeProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000001 -->
<owl:Class rdf:about="&obo;BFO_0000001">
<rdfs:label xml:lang="en">entity</rdfs:label>
<obo:BFO_0000179>entity</obo:BFO_0000179>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81</obo:IAO_0000116>
<obo:BFO_0000180>Entity</obo:BFO_0000180>
<obo:IAO_0000600 xml:lang="en">An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])</obo:IAO_0000600>
<obo:IAO_0000116 xml:lang="en">Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf</obo:IAO_0000116>
<obo:IAO_0000112 xml:lang="en">Julius Caesar</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">Verdi’s Requiem</obo:IAO_0000112>
<obo:IAO_0000111 xml:lang="en">entity</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">the Second World War</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">your body mass index</obo:IAO_0000112>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000002 -->
<owl:Class rdf:about="&obo;BFO_0000002">
<rdfs:label xml:lang="en">continuant</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000001"/>
<obo:BFO_0000179>continuant</obo:BFO_0000179>
<obo:BFO_0000180>Continuant</obo:BFO_0000180>
<obo:IAO_0000602>(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] </obo:IAO_0000602>
<obo:IAO_0000600 xml:lang="en">A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])</obo:IAO_0000600>
<obo:IAO_0000115 xml:lang="en">An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants</obo:IAO_0000116>
<obo:IAO_0000111 xml:lang="en">continuant</obo:IAO_0000111>
<obo:IAO_0000601 xml:lang="en">if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])</obo:IAO_0000601>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000003 -->
<owl:Class rdf:about="&obo;BFO_0000003">
<rdfs:label xml:lang="en">occurrent</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000001"/>
<obo:IAO_0000602>(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] </obo:IAO_0000602>
<obo:IAO_0000115 xml:lang="en">An entity that has temporal parts and that happens, unfolds or develops through time.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region</obo:IAO_0000116>
<obo:IAO_0000116>Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.</obo:IAO_0000116>
<obo:IAO_0000602>(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] </obo:IAO_0000602>
<obo:IAO_0000600 xml:lang="en">An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])</obo:IAO_0000600>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.</obo:IAO_0000116>
<obo:BFO_0000180>Occurrent</obo:BFO_0000180>
<obo:BFO_0000179>occurrent</obo:BFO_0000179>
<obo:IAO_0000601 xml:lang="en">Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])</obo:IAO_0000601>
<obo:IAO_0000116 xml:lang="en">Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.</obo:IAO_0000116>
<obo:IAO_0000601 xml:lang="en">b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])</obo:IAO_0000601>
<obo:IAO_0000111 xml:lang="en">occurrent</obo:IAO_0000111>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000004 -->
<owl:Class rdf:about="&obo;BFO_0000004">
<rdfs:label xml:lang="en">independent continuant</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000002"/>
<obo:BFO_0000180>IndependentContinuant</obo:BFO_0000180>
<obo:IAO_0000602>(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] </obo:IAO_0000602>
<obo:IAO_0000602>(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] </obo:IAO_0000602>
<obo:IAO_0000115 xml:lang="en">A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.</obo:IAO_0000115>
<obo:IAO_0000601 xml:lang="en">For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])</obo:IAO_0000601>
<obo:BFO_0000179>ic</obo:BFO_0000179>
<obo:IAO_0000112 xml:lang="en">a chair</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a heart</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a leg</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a molecule</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a spatial region</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an atom</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an orchestra.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an organism</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])</obo:IAO_0000115>
<obo:IAO_0000111 xml:lang="en">independent continuant</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">the bottom right portion of a human torso</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of your mouth</obo:IAO_0000112>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000015 -->
<owl:Class rdf:about="&obo;BFO_0000015">
<rdfs:label xml:lang="en">process</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000003"/>
<obo:BFO_0000180>Process</obo:BFO_0000180>
<obo:IAO_0000602>(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] </obo:IAO_0000602>
<obo:IAO_0000115 xml:lang="en">An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)</obo:IAO_0000116>
<obo:IAO_0000112 xml:lang="en">a process of cell-division, \ a beating of the heart</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a process of meiosis</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a process of sleeping</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])</obo:IAO_0000115>
<obo:BFO_0000179>process</obo:BFO_0000179>
<obo:IAO_0000111 xml:lang="en">process</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">the course of a disease</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the flight of a bird</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the life of an organism</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">your process of aging.</obo:IAO_0000112>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000016 -->
<owl:Class rdf:about="&obo;BFO_0000016">
<rdfs:label xml:lang="en">disposition</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000017"/>
<obo:IAO_0000602>(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] </obo:IAO_0000602>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.</obo:IAO_0000116>
<obo:BFO_0000180>Disposition</obo:BFO_0000180>
<obo:IAO_0000602>(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] </obo:IAO_0000602>
<obo:BFO_0000179>disposition</obo:BFO_0000179>
<obo:IAO_0000601 xml:lang="en">If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])</obo:IAO_0000601>
<obo:IAO_0000112 xml:lang="en">an atom of element X has the disposition to decay to an atom of element Y</obo:IAO_0000112>
<obo:IAO_0000600 xml:lang="en">b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])</obo:IAO_0000600>
<obo:IAO_0000112 xml:lang="en">certain people have a predisposition to colon cancer</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">children are innately disposed to categorize objects in certain ways.</obo:IAO_0000112>
<obo:IAO_0000111 xml:lang="en">disposition</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">the cell wall is disposed to filter chemicals in endocytosis and exocytosis</obo:IAO_0000112>
<rdfs:isDefinedBy rdf:resource="&obo;bfo.owl"/>
<obo:IAO_0000412 rdf:resource="&obo;obi.owl"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000017 -->
<owl:Class rdf:about="&obo;BFO_0000017">
<rdfs:label xml:lang="en">realizable entity</rdfs:label>
<rdfs:subClassOf rdf:resource="&obo;BFO_0000020"/>
<obo:IAO_0000602>(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] </obo:IAO_0000602>
<obo:IAO_0000115 xml:lang="en">A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.</obo:IAO_0000115>