diff --git a/docs/software-packages/specfem3d.md b/docs/software-packages/specfem3d.md deleted file mode 100644 index b9007609..00000000 --- a/docs/software-packages/specfem3d.md +++ /dev/null @@ -1,55 +0,0 @@ -# SPECFEM3D Cartesian - -[SPECFEM3D Cartesian](https://geodynamics.org/cig/software/specfem3d/), -simulates acoustic (fluid), elastic (solid), coupled acoustic/elastic, -poroelastic or seismic wave propagation in any type of conforming mesh -of hexahedra (structured or not.) It can, for instance, model seismic -waves propagating in sedimentary basins or any other regional geological -model following earthquakes. It can also be used for non-destructive -testing or for ocean acoustics. - -## Useful Links - -- [SPECFEM3D User - Resources](https://geodynamics.org/cig/software/specfem3d/#users/) -- [SPECFEM3D - Wiki](https://wiki.geodynamics.org/software:specfem3d:start) - -## Using SPECFEM3D Cartesian on Cirrus - -SPECFEM3D Cartesian is freely available to all Cirrus users. - -Running parallel SPECFEM3D Cartesian jobs ----------------------------------------- - -SPECFEM3D can exploit multiple nodes on Cirrus and will generally be run -in exclusive mode over more than one node. Furthermore, it can be run on -the GPU nodes. - -For example, the following script will run a SPECFEM3D job using 4 nodes -(144 cores) with pure MPI. - - #!/bin/bash --login - - # Slurm job options (name, compute nodes, job time) - #SBATCH --job-name=SPECFEM3D_Example - #SBATCH --time=1:0:0 - #SBATCH --exclusive - #SBATCH --nodes=4 - #SBATCH --tasks-per-node=36 - #SBATCH --cpus-per-task=1 - - - # Replace [budget code] below with your project code (e.g. t01) - #SBATCH --account=[budget code] - # Replace [partition name] below with your partition name (e.g. standard,gpu) - #SBATCH --partition=[partition name] - # Replace [qos name] below with your qos name (e.g. standard,long,gpu) - #SBATCH --qos=[qos name] - - - # Load SPECFEM3D module - module load specfem3d - - # Run using input in input.namd - srun xspecfem3D diff --git a/mkdocs.yml b/mkdocs.yml index d36b2efa..2cfaeaaa 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -63,7 +63,6 @@ nav: - "Quantum Espresso (QE)": software-packages/qe.md - "STAR-CCM+": software-packages/starccm+.md - "VASP": software-packages/vasp.md - - "SPECFEM3D Cartesian": software-packages/specfem3d.md - "Software Libraries": - "Intel MKL: BLAS, LAPACK, ScaLAPACK": software-libraries/intel_mkl.md - "HDF5": software-libraries/hdf5.md @@ -72,9 +71,3 @@ nav: - "Profiling using Scalasca": software-tools/scalasca.md - "Intel VTune": software-tools/intel-vtune.md - "References and further reading": user-guide/reading.md - - - - - -