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pyproject.toml
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pyproject.toml
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[build-system]
build-backend = "flit_core.buildapi"
requires = [
"flit_core >=3.4,<4",
"setuptools_scm",
"importlib_metadata>=0.7; python_version < '3.8'",
]
[project]
name = "anndata"
description = "Annotated data."
requires-python = ">=3.7"
license = {file = "LICENSE"}
authors = [
{name = "Philipp Angerer"},
{name = "Alex Wolf"},
{name = "Isaac Virshup"},
{name = "Sergei Rybakov"},
]
maintainers = [
{name = "Isaac Virshup", email = "[email protected]"},
{name = "Philipp Angerer", email = "[email protected]"},
{name = "Alex Wolf", email = "[email protected]"},
]
readme = {file = "README.rst", content-type="text/x-rst"}
classifiers = [
"License :: OSI Approved :: BSD License",
"Environment :: Console",
"Framework :: Jupyter",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"Natural Language :: English",
"Operating System :: MacOS :: MacOS X",
"Operating System :: Microsoft :: Windows",
"Operating System :: POSIX :: Linux",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Scientific/Engineering :: Visualization",
]
dependencies = [
"pandas>=1.1.1", # pandas <1.1.1 has pandas/issues/35446
"numpy>=1.16.5", # required by pandas 1.x
"scipy>1.4",
"h5py>=3",
"natsort",
"packaging>=20",
# for getting the stable version
"importlib_metadata>=0.7; python_version < '3.8'",
"typing_extensions; python_version < '3.8'", # Remove once we depend on python > 3.7
]
dynamic = ["version"]
[project.urls]
Documentation = "https://anndata.readthedocs.io/"
Source = "https://github.com/theislab/anndata"
Home-page = "https://github.com/theislab/anndata"
[project.optional-dependencies]
dev = [
# dev version generation
"setuptools_scm",
# static checking
"black>=20.8b1",
"docutils",
]
doc = [
"sphinx>=4.1,<4.2",
"sphinx-rtd-theme",
"sphinx-autodoc-typehints>=1.11.0",
"sphinx_issues",
"nbsphinx",
"scanpydoc>=0.7.3",
"typing_extensions; python_version < '3.8'",
"zarr",
]
test = [
"loompy>=3.0.5",
"pytest>=6.0",
"pytest-cov>=2.10",
"zarr",
"matplotlib",
"sklearn",
"openpyxl",
"joblib",
"boltons",
"scanpy",
"dask[array]",
]
[tool.flit.sdist]
exclude = [
'anndata/tests/test_*.py',
'anndata/tests/data',
]
[tool.coverage.run]
source = ["anndata"]
omit = [
"setup.py",
"versioneer.py",
"anndata/_version.py",
"**/test_*.py",
]
[tool.pytest.ini_options]
addopts = "--doctest-modules"
python_files = "test_*.py"
testpaths = ["anndata", "docs/concatenation.rst"]
filterwarnings = [
'ignore:X\.dtype being converted to np.float32:FutureWarning'
]
# For some reason this effects how logging is shown when tests are run
xfail_strict = true
[tool.black]
line-length = 88
target-version = ["py37"]
exclude = "^/build/.*$"