From 22277a3cea450230df764429cb76acb12d9552c6 Mon Sep 17 00:00:00 2001 From: Thomas Walsh Date: Tue, 24 Sep 2024 18:12:03 +0100 Subject: [PATCH] Add funnel check to BaseAge pipeline --- modules/Bio/EnsEMBL/Compara/PipeConfig/BaseAge_conf.pm | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/modules/Bio/EnsEMBL/Compara/PipeConfig/BaseAge_conf.pm b/modules/Bio/EnsEMBL/Compara/PipeConfig/BaseAge_conf.pm index c12c762d1a8..c863b16105b 100644 --- a/modules/Bio/EnsEMBL/Compara/PipeConfig/BaseAge_conf.pm +++ b/modules/Bio/EnsEMBL/Compara/PipeConfig/BaseAge_conf.pm @@ -126,7 +126,7 @@ sub pipeline_analyses { }, -flow_into => { '2->A' => { 'base_age' => { 'seq_region' => '#name#', }, }, - 'A->1' => [ 'big_bed' ], + 'A->1' => [ 'base_age_funnel_check' ], }, }, @@ -161,6 +161,11 @@ sub pipeline_analyses { }, }, + { -logic_name => 'base_age_funnel_check', + -module => 'Bio::EnsEMBL::Compara::RunnableDB::FunnelCheck', + -flow_into => { 1 => { 'big_bed' => INPUT_PLUS() } }, + }, + { -logic_name => 'big_bed', -module => 'Bio::EnsEMBL::Compara::RunnableDB::BaseAge::BigBed', -parameters => {