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compara-proteintrees.rb
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compara-proteintrees.rb
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#Template generated on 2019-10-14 12:42:01 +0100
#Do not edit this file. Modify the relevant config and regenerate
require 'digest'
class ComparaProteintrees < Formula
url 'file://'+File.expand_path(__FILE__)
desc 'Dependencies for the ComparaProteintrees formula'
sha256 Digest::SHA256.file(File.expand_path(__FILE__)).hexdigest
version '11'
depends_on 'r'
depends_on 'ensembl/external/hmmer'
depends_on 'ensembl/external/hmmer2'
depends_on 'ensembl/external/blast'
depends_on 'ensembl/external/mafft'
depends_on 'ensembl/external/kalign'
depends_on 'ensembl/external/muscle'
depends_on 'ensembl/external/clustal-w'
depends_on 'ensembl/external/t-coffee'
depends_on 'ensembl/ensembl/hclustersg'
depends_on 'ensembl/ensembl/treebest'
depends_on 'ensembl/external/quicktree'
depends_on 'ensembl/ensembl/paml43'
depends_on 'ensembl/ensembl/ktreedist'
depends_on 'ensembl/ensembl/raxml-get-patterns'
depends_on 'ensembl/ensembl/noisy'
depends_on 'ensembl/ensembl/notung'
depends_on 'ensembl/external/fasttree'
depends_on 'ensembl/ensembl/prottest3'
depends_on 'ensembl/external/trimal'
depends_on 'ensembl/ensembl/cafe'
depends_on 'ensembl/external/prank'
depends_on 'ensembl/external/cd-hit'
depends_on 'ensembl/ensembl/raxml'
depends_on 'ensembl/ensembl/examl'
depends_on 'ensembl/ensembl/pantherscore'
depends_on 'ensembl/ensembl/bioperl-run-169'
def install
File.open('compara-proteintrees', 'w') { |file|
file.write '#!/bin/sh'+"\n"
deps.each do | dep |
f = dep.to_formula
file.write "echo "+[f.full_name, f.version, f.prefix].join("\t")+"\n"
end
}
bin.install 'compara-proteintrees'
end
end