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Transcriptomics Workflow output - making data matrices explicit #50

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proccaserra opened this issue Oct 16, 2019 · 1 comment
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CMMI Issue related to the CMMI maturity model Resolute Issue associated with RESOLUTE project Workflow

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@proccaserra
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issues are:

  • use of compact URI for gene, transcript, exon identifiers
  • use of compact URI for sample identifiers / experimental conditions
  • explicit declaration of quantitation type in the data matrix

@oyadenizbeyan @sgtp
CMMI requirements:
move from free text tab delimited matrix -> self describing data matrix where all data cube dimensions are semantically tagged and the data format explicit

example from a metabolomics use cases (@sedlyarov for future discussion)
https://github.com/proccaserra/rose2018ng-notebook

@FuqiX FuqiX added CMMI Issue related to the CMMI maturity model Resolute Issue associated with RESOLUTE project Workflow labels Jan 8, 2020
@mcourtot
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PRS submitted terms to STATO. Would be nice to have explicit quantitation header and possibly convert to RDF

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CMMI Issue related to the CMMI maturity model Resolute Issue associated with RESOLUTE project Workflow
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