From 2ef195284f6c5b7641c953af70789311884166f3 Mon Sep 17 00:00:00 2001 From: Jennings Zhang Date: Thu, 13 Jul 2023 04:58:18 -0400 Subject: [PATCH] Fix left/right in README.md --- README.md | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 2cc80d2..7e62fb6 100644 --- a/README.md +++ b/README.md @@ -40,16 +40,19 @@ On an input dataset containing `input/1.mnc input/2.mnc`, the outputs will be ### Example: Extract Multiple Masks You have a directory of input MINC segmentation files where white matter (WM) is labeled -by 160,4 on the left, and 161,5 on the right. You want to extract left and right WM masks +by 161,5 on the left, and 160,4 on the right\*. You want to extract left and right WM masks to the file names "lh.wm.mnc" and "rh.wm.mnc" respectively: ```shell -apptainer exec docker://fndsc/pl-nums2mask nums2mask -m 'lh.wm.mnc:160,4 rh.wm.mnc:161,5' input/ output/ +apptainer exec docker://fndsc/pl-nums2mask nums2mask -m 'lh.wm.mnc:161,5 rh.wm.mnc:160,4' input/ output/ ``` On an input dataset containing `input/1.mnc input/2.mnc`, the outputs will be `output/1/lh.wm.mnc output/1/rh.wm.mnc output/2/lh.wm.mnc output/2/rh.wm.mnc`. +\*Footnote: example label numbers come from FreeSurfer's +[`FreeSurferColorLUT`](https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/AnatomicalROI/FreeSurferColorLUT). + ## Development ### Build