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Nice package for doing this.
But in the tutorial, I think you missed the code for calculating the RSS.
Nevertheless, I got an error while I tried to do that:
rrs_df <- calculate_rrs(cellInfo,binary_regulons, cell_type_column = "seuratCluster")
Error in binary_regulons[regulon, ] : incorrect number of dimensions
cellInfo is the metadata table from seurat
Thanks!
The text was updated successfully, but these errors were encountered:
sorry for the very let reply! You are totally right and I did forget to put the code for calculating the rrs. I will add this very soon and add a very short tutorial on how to process results from the new SCENIC nextflow pipeline, as this makes it much easier to produce SCENIC results from single-cell data than the R implementation:
Hi scFunctions Developer,
Nice package for doing this.
But in the tutorial, I think you missed the code for calculating the RSS.
Nevertheless, I got an error while I tried to do that:
rrs_df <- calculate_rrs(cellInfo,binary_regulons, cell_type_column = "seuratCluster")
Error in binary_regulons[regulon, ] : incorrect number of dimensions
cellInfo is the metadata table from seurat
Thanks!
The text was updated successfully, but these errors were encountered: