decompose

#!/usr/bin/env python
# -*- coding: utf-8

# Copyright (C) 2010 - 2012, A. Murat Eren
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free
# Software Foundation; either version 2 of the License, or (at your option)
# any later version.
#
# Please read the COPYING file.

import os
import sys

try:
    import Oligotyping
except ImportError:
    import inspect
    print('''
    Oligotyping package seems to be missing from your PYTHONPATH. Running this may help:
        
        export PYTHONPATH="$PYTHONPATH:%s"

    ''' % (os.path.realpath(os.path.abspath(os.path.split(inspect.getfile(inspect.currentframe()))[0]))))
    sys.exit()

from Oligotyping.lib.decomposer import Decomposer
from Oligotyping.utils.utils import ConfigError
from Oligotyping.utils import parsers


if __name__ == '__main__':
    if '--version' in sys.argv:
        print(parsers.version)
        sys.exit()

    parser = parsers.decomposer()
    decomposer = Decomposer(parser.parse_args())

    try:
        decomposer.decompose()
    except ConfigError as e:
        print(e)
        sys.exit(-1)