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GEOS-IT 5.29.4-p3 still missing stuff (1) #215

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rtodling opened this issue Sep 29, 2022 · 9 comments
Open

GEOS-IT 5.29.4-p3 still missing stuff (1) #215

rtodling opened this issue Sep 29, 2022 · 9 comments
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@elakkraoui @rlucches

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@rtodling
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rtodling commented Sep 29, 2022 •
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I am attempting to collect all know issues in a single place. We now have emails that have talking about items that are troubled in that tag, but the emails are scattered, disconnected from each other at times, and items are redundantly numbered.

Note that addressing some of these involve changes to repos other than the GEOSadas fixture. Whenever addressed, those repos should refer to this issue in GEOSadas.

I am copying and pasting from exchanges w/ Rob.

  1. same as 16

  2. I see inconsistencies in the gocart settings that I thought we had handled in the tag

  3. same as 13

  4. I see inconsistencies in the gaas obsys file that I thought we had resolved

  5. I see a change in the obsys.rc that I don’t understand associate w/ AMSRE

  6. ??

  7. ??

  8. ??

  9. Fixed a problem in silo.arc and mstorage.arc:

    ${PESTOROOT}%s/other/Y%y4/M%m2/%s.ctm_tavg_1hr_glo_C180x180x6_v72.%y4-%m2-%d2T%h2%n2Z.nc4
    . ${PESTOROOT}%s/other/Y%y4/M%m2/%s.ctm_inst_1hr_glo_C180x180x6_v72.%y4-%m2-%d2T%h2%n2Z.nc4

  10.   The destination directory should be diag, not other.

  11. Correct AOD_OBSCLASS in FVDAS_Run_Config to add: patmosx_ods,mod04_061_his,myd04_061_his

  12. Correct OBSCLASS in FVDAS_Run_Config to remove geosit_wspd_pre-qc_bufr and geosit_1bssu_bufr.

  13. Correct mhsbufr-metopc line in gsi.rc.tmpl

  14. Modify monthly.yyyymm.pl.tmpl to remove "dastest" from the qos

  15. Remove all C180x180x6 collections from monthly.rc16.

  16. There were garbled lines from GIT (HEAD,develop) at the bottom of the following two files in run:

    run/gmao_ozinfo.db/active.tbl
    run/gmao_ozinfo.db/available.tbl

    Get rid of the GIT marker lines and choose the entry that has 22 levels (for NOAA-19).

  17. Remove AMSRE from the OBSCLASS until Jianjun figures out what is wrong.

  18. For the LWI change in the 4 collections below (in the NOTES), LWI will only be replaced by FRACI AND for convenience, TS. Those two variables, along with the 4 other constant FRACTIONS, can be used to replace the original intent of LWI. The 4 constant variables are in the constants file (and always have been). This is a change to the tagged version of HISTORY.rc.tmpl.

Changes in HISTORY since the last test run:

A) _NCKS tags removed
B) chm_tavg_3hr_glo_L576x361_slv collection:  change LWI to FRLAND, FRLANDICE, FRLAKE, FROCEAN, FRACI
C) chm_tavg_3hr_glo_C180x180x6_slv collection:  change LWI to FRLAND, FRLANDICE, FRLAKE, FROCEAN, FRACI
D) aer_inst_3hr_glo_L576x361_v72 collection:  change LWI to FRLAND, FRLANDICE, FRLAKE, FROCEAN, FRACI
E) aer_inst_3hr_glo_C180x180x6_v72 collection:  change LWI to FRLAND, FRLANDICE, FRLAKE, FROCEAN, FRACI
  1. GEOS-IT is using an incorrect gsi_sens.rc.tmpl - though this is not an issue since FSOI not running, I recommend it to get changed for constancy. This need to way for the new path.
  2. Model group reports on a few unit errors in history put out by FVdycoreCubed_GridComp
@elakkraoui
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  • Items 2 and 4 are not issues.
  • item 11 should be: add "patmosx_ods,mod04_061_flk,myd04_061_flk"
  • items 1 and 16 are the same. Unless the issue you noticed is really in sat.db not oz.db.
  • item 17 would be addressed with Jianjun's PR.

@rtodling
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rtodling commented Oct 3, 2022 •
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  1. Fixed in Various small fixes for GEOS-IT  GEOSana_GridComp#109
  2. turned out not to be the case
  3. Fixed in Various small fixes for GEOS-IT  GEOSana_GridComp#109
  4. n/a
  5. Fixed in Various small fixes for GEOS-IT  GEOSana_GridComp#109 (no need to change obeys.rc)
  6. n/a
  7. n/a
  8. n/a
  9. Fixed in minor fixes for GEOSIT - one fix for FP (EnKF) #217
  10. Fixed in minor fixes for GEOSIT - one fix for FP (EnKF) #217
  11. Fixed in minor fixes for GEOSIT - one fix for FP (EnKF) #217
  12. Fixed in minor fixes for GEOSIT - one fix for FP (EnKF) #217
  13. See 3
  14. Fixed in minor fixes for GEOSIT - one fix for FP (EnKF) #217
  15. Fixed in minor fixes for GEOSIT - one fix for FP (EnKF) #217
  16. See 1
  17. Same as 5
  18. Fixed in @GEOSgcm_App v1.5.6.2
  19. Fixed in Various small fixes for GEOS-IT  GEOSana_GridComp#109
  20. Fixed in v1.2.15.1 (from prior v1.2.15)

@rtodling
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rtodling commented Oct 3, 2022 •
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Also included:

GEOS-ESM/GEOSana_GridComp#110

In @GEOSgcm_App:
modified: AGCM.rc.tmpl - update version of solar file: NRLSSI2
modified: HISTORY_FP.rc.21z.tmpl - bkg_clcv stream, had incorrect (old) label
modified: HISTORY_GEOSIT.rc.tmpl - revise Fraction of land/ice/etc output in a few of com collections (per item 18 above)

@rtodling rtodling mentioned this issue Oct 3, 2022
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@elakkraoui
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Ricardo, can I add one last item to the list (it came up at our reanalysis meeting today)?

21- Add historical gmi version 7 to obsys.rc with a transition to NRT files in 20220101

BEGIN geosit_gmi_bufr => gmi.%y4%m2%d2.t%h2z.bufr
20140401_00z-20211231_18z 060000 /discover/nobackup/projects/gmao/input/dao_ops/ops/reanalysis/gmi_v7/bufr/Y%y4/M%m2/gmi_v7_L1CR.%y4%m2%d2.t%h2z.bufr
20220101_00z-21001231_18z 060000 /discover/nobackup/projects/gmao/input/dao_ops/ops/flk/gmi/bufr/gmi/Y%y4/M%m2/gmi_L1CR.%y4%m2%d2.t%h2z.bufr
END

@rtodling
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rtodling commented Oct 3, 2022

I'll do it Amal, but it still blows my mind what GEOS IT is carrying GMI - it's assimilated, and even as passive it has questionable use ... anyway.

@elakkraoui
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elakkraoui commented Oct 4, 2022 •
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Ricardo, GEOSIT is not assimilating GMI, it is to be monitored only. Also, Yanqiu and Jianjun are updating us regularly on the issues with GMI assimilation which we hope can be resolved in time for R21C.

@rtodling
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rtodling commented Oct 5, 2022

Still more:

I forgot that Rob has a modified GEOSadas.csm in the run dir ... I have now included that in a tag.

@rtodling
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rtodling commented Oct 5, 2022

Ricardo, GEOSIT is not assimilating GMI, it is to be monitored only. Also, Yanqiu and Jianjun are updating us regularly on the issues with GMI assimilation which we hope can be resolved in time for R21C.

Amal, I know the run is not assimilating GMI - I was the one who removed the date from the 3dvar to begin with; I'm just not sure about the value of using it for monitoring but so be it ...

@rlucches
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rlucches commented Oct 5, 2022 via email

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