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Biology Meets Programming

My codes of the Coursera's course named "Biology Meets Programming: Bioinformatics for Beginners" are in this repository.

These files are for the first week 😊 :

  • hidden_messages_dictionary.py
  • ReverseComplement.py
  • PatternMatching.py
  • PatternInRegion.py

These files are for the second week 😄 :

  • SymbolArray.py
  • SkewArray.py
  • HammingDistance.py
  • ApproximatePatternMatching.py

These files are for the third week 😬 :

  • Motifs.py
  • Consensus.py
  • Score.py
  • probability.py
  • ProfileMostProbablePattern.py
  • GreedyMotifSearch.py

image_2020-03-26_02-09-28

These files are for the fourth week 😍 :

  • RandomizedMotifSearch.py
  • Motif_Week4.py
  • Normalize.py
  • RandomizedMotifSearch.py
  • ProfileGeneratedString.py
  • RandomMotifs.py
  • GibbsSampler.py

Some additional notes:

Laplace’s Rule of Succession is used for CountWithPseudocounts function.
RandomizedMotifSearch has the advantage of being able to find longer motifs.

Just don't forget to be happy 😉