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testOutputParsed.txt
129 lines (126 loc) · 5.99 KB
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testOutputParsed.txt
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>RS008811|BA000002.2/445649-445320|Aeropyrum pernix K1|RNaseP_arch
External loop : 0
Interior loop ( 1,120 ) UG; ( 3,119 ) CG: 230
Interior loop ( 3,119 ) CG; ( 4,118 ) GC: -240
Interior loop ( 4,118 ) GC; ( 5,117 ) GC: -330
Interior loop ( 5,117 ) GC; ( 6,116 ) CG: -340
Interior loop ( 6,116 ) CG; ( 7,115 ) GC: -240
Interior loop ( 7,115 ) GC; ( 8,114 ) GC: -330
Interior loop ( 8,114 ) GC; ( 9,113 ) UG: -250
Interior loop ( 12,68 ) UA; ( 14,66 ) GC: 110
Interior loop ( 14,66 ) GC; ( 15,65 ) CG: -340
Interior loop ( 15,65 ) CG; ( 16,63 ) GC: 140
Interior loop ( 16,63 ) GC; ( 17,62 ) GC: -330
Interior loop ( 17,62 ) GC; ( 18,61 ) CG: -340
Interior loop ( 18,61 ) CG; ( 19,60 ) GC: -240
Interior loop ( 19,60 ) GC; ( 20,59 ) GC: -330
Interior loop ( 20,59 ) GC; ( 21,58 ) GC: -330
Interior loop ( 21,58 ) GC; ( 23,55 ) UA: 160
Interior loop ( 23,55 ) UA; ( 25,53 ) AU: 170
Interior loop ( 25,53 ) AU; ( 26,52 ) CG: -220
Interior loop ( 26,52 ) CG; ( 29,49 ) CG: 110
Interior loop ( 29,49 ) CG; ( 30,48 ) CG: -330
Interior loop ( 30,48 ) CG; ( 31,47 ) GC: -240
Interior loop ( 31,47 ) GC; ( 32,46 ) GC: -330
Interior loop ( 32,46 ) GC; ( 33,43 ) UA: 330
Interior loop ( 33,43 ) UA; ( 34,42 ) CG: -240
Hairpin loop ( 34,42 ) CG : 450
Interior loop ( 69,110 ) UG; ( 70,109 ) CG: -150
Interior loop ( 70,109 ) CG; ( 71,108 ) CG: -330
Interior loop ( 71,108 ) CG; ( 72,107 ) CG: -330
Interior loop ( 72,107 ) CG; ( 73,106 ) GC: -240
Interior loop ( 73,106 ) GC; ( 74,105 ) GC: -330
Interior loop ( 74,105 ) GC; ( 75,104 ) UG: -250
Interior loop ( 75,104 ) UG; ( 78,103 ) UA: 380
Interior loop ( 78,103 ) UA; ( 80,101 ) CG: 110
Interior loop ( 80,101 ) CG; ( 81,100 ) UG: -210
Interior loop ( 81,100 ) UG; ( 82,98 ) GC: 240
Interior loop ( 82,98 ) GC; ( 84,97 ) CG: 40
Interior loop ( 84,97 ) CG; ( 85,96 ) CG: -330
Interior loop ( 85,96 ) CG; ( 86,95 ) UG: -210
Interior loop ( 86,95 ) UG; ( 87,94 ) CG: -150
Interior loop ( 87,94 ) CG; ( 88,93 ) CG: -330
Hairpin loop ( 88,93 ) CG : 190
Multi loop ( 9,113 ) UG : 370
>RS000324|X00501.1/7-121|Escherichia coli|5S_rRNA
External loop : -110
Interior loop ( 1,113 ) CG; ( 2,112 ) UA: -210
Interior loop ( 2,112 ) UA; ( 3,111 ) GC: -210
Interior loop ( 3,111 ) GC; ( 4,110 ) GC: -330
Interior loop ( 4,110 ) GC; ( 5,109 ) CG: -340
Interior loop ( 5,109 ) CG; ( 6,108 ) GU: -140
Interior loop ( 6,108 ) GU; ( 7,107 ) GC: -210
Interior loop ( 7,107 ) GC; ( 9,104 ) CG: 230
Interior loop ( 11,66 ) UG; ( 13,65 ) GC: 240
Interior loop ( 13,65 ) GC; ( 14,64 ) CG: -340
Interior loop ( 14,64 ) CG; ( 15,62 ) GU: 240
Interior loop ( 15,62 ) GU; ( 16,61 ) CG: -250
Interior loop ( 16,61 ) CG; ( 17,60 ) GC: -240
Interior loop ( 17,60 ) GC; ( 18,59 ) GC: -330
Interior loop ( 18,59 ) GC; ( 19,58 ) UG: -250
Interior loop ( 19,58 ) UG; ( 20,57 ) GC: -140
Interior loop ( 20,57 ) GC; ( 22,54 ) UA: 250
Interior loop ( 22,54 ) UA; ( 23,53 ) CG: -240
Interior loop ( 23,53 ) CG; ( 25,51 ) CG: 50
Interior loop ( 25,51 ) CG; ( 28,48 ) CG: 110
Interior loop ( 28,48 ) CG; ( 29,47 ) UA: -210
Interior loop ( 29,47 ) UA; ( 30,46 ) GC: -210
Interior loop ( 30,46 ) GC; ( 31,45 ) AU: -240
Interior loop ( 31,45 ) AU; ( 33,41 ) CG: 340
Hairpin loop ( 33,41 ) CG : 500
Interior loop ( 67,103 ) CG; ( 68,102 ) CG: -330
Interior loop ( 68,102 ) CG; ( 70,100 ) AU: 110
Interior loop ( 70,100 ) AU; ( 71,99 ) UG: -140
Interior loop ( 71,99 ) UG; ( 74,97 ) UG: 190
Interior loop ( 74,97 ) UG; ( 75,92 ) AU: 460
Interior loop ( 75,92 ) AU; ( 78,90 ) GC: 480
Interior loop ( 78,90 ) GC; ( 80,89 ) GC: 50
Interior loop ( 80,89 ) GC; ( 81,88 ) GC: -330
Interior loop ( 81,88 ) GC; ( 82,87 ) GC: -330
Hairpin loop ( 82,87 ) GC : 440
Multi loop ( 9,104 ) CG : 120
>RS000502|X71804.1/109-227|Mus musculus ( house mouse )|5S_rRNA
External loop : -120
Interior loop ( 1,118 ) GC; ( 2,117 ) UG: -250
Interior loop ( 2,117 ) UG; ( 3,116 ) CG: -150
Interior loop ( 3,116 ) CG; ( 4,115 ) UA: -210
Interior loop ( 4,115 ) UA; ( 5,114 ) AU: -130
Interior loop ( 5,114 ) AU; ( 6,113 ) CG: -220
Interior loop ( 6,113 ) CG; ( 7,112 ) GU: -140
Interior loop ( 7,112 ) GU; ( 8,111 ) GC: -210
Interior loop ( 8,111 ) GC; ( 9,110 ) CG: -340
Interior loop ( 14,65 ) CG; ( 15,64 ) CG: -330
Interior loop ( 15,64 ) CG; ( 16,62 ) AU: 170
Interior loop ( 16,62 ) AU; ( 17,61 ) CG: -220
Interior loop ( 17,61 ) CG; ( 18,60 ) CG: -330
Interior loop ( 18,60 ) CG; ( 19,59 ) CG: -330
Interior loop ( 19,59 ) CG; ( 20,58 ) UA: -210
Interior loop ( 20,58 ) UA; ( 21,57 ) GC: -210
Interior loop ( 21,57 ) GC; ( 23,53 ) AU: 230
Interior loop ( 23,53 ) AU; ( 25,52 ) GC: 170
Interior loop ( 25,52 ) GC; ( 26,51 ) CG: -340
Interior loop ( 26,51 ) CG; ( 29,48 ) CG: 70
Interior loop ( 29,48 ) CG; ( 30,47 ) CG: -330
Interior loop ( 30,47 ) CG; ( 31,46 ) GC: -240
Interior loop ( 31,46 ) GC; ( 32,45 ) AU: -240
Interior loop ( 32,45 ) AU; ( 33,42 ) UA: 380
Interior loop ( 33,42 ) UA; ( 34,41 ) CG: -240
Hairpin loop ( 34,41 ) CG : 340
Interior loop ( 66,109 ) GU; ( 67,108 ) CG: -250
Interior loop ( 67,108 ) CG; ( 68,107 ) CG: -330
Interior loop ( 68,107 ) CG; ( 69,106 ) UG: -210
Interior loop ( 69,106 ) UG; ( 70,105 ) GC: -140
Interior loop ( 70,105 ) GC; ( 71,104 ) GC: -330
Interior loop ( 71,104 ) GC; ( 72,103 ) UA: -220
Interior loop ( 72,103 ) UA; ( 75,102 ) GU: 380
Interior loop ( 75,102 ) GU; ( 76,101 ) UA: -140
Interior loop ( 76,101 ) UA; ( 78,99 ) CG: 110
Interior loop ( 78,99 ) CG; ( 79,98 ) UG: -210
Interior loop ( 79,98 ) UG; ( 80,97 ) UG: -50
Interior loop ( 80,97 ) UG; ( 81,96 ) GU: 30
Interior loop ( 81,96 ) GU; ( 82,95 ) GC: -210
Interior loop ( 82,95 ) GC; ( 84,93 ) UG: 110
Interior loop ( 84,93 ) UG; ( 85,92 ) GC: -140
Interior loop ( 85,92 ) GC; ( 86,91 ) GC: -330
Hairpin loop ( 86,91 ) GC : 20
Multi loop ( 9,110 ) CG : 140