Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Phyloflash refernce database aborts during bowtie build #166

Open
whitnersyrena opened this issue Apr 7, 2022 · 0 comments
Open

Phyloflash refernce database aborts during bowtie build #166

whitnersyrena opened this issue Apr 7, 2022 · 0 comments

Comments

@whitnersyrena
Copy link

Hi there,

I'm trying to run phyloflash on a MacOS and having an issue while trying to create the initial database.
It gets through to the bowtie build step and then gives the following error:

running subcommand:
/opt/anaconda3/envs/pf/bin/bowtie-build
./138.1/SILVA_SSU.noLSU.masked.trimmed.NR96.fixed.fasta
./138.1/SILVA_SSU.noLSU.masked.trimmed.NR96.fixed.bt -q
2>tmp.bowtiebuild.log
sh: line 1: 78886 Abort trap: 6 /opt/anaconda3/envs/pf/bin/bowtie-build ./138.1/SILVA_SSU.noLSU.masked.trimmed.NR96.fixed.fasta ./138.1/SILVA_SSU.noLSU.masked.trimmed.NR96.fixed.bt -q 2> tmp.bowtiebuild.log
[14:57:38] FATAL: Tool execution failed!.
Error was 'No such file or directory' and return code '34304'
Check error log file tmp.bowtiebuild.log
Aborting.
[14:57:38] Saving log to file phyloFlash_log_on_error

Here is the information provided in the bowtiebuild.log file:
dyld: Library not loaded: @rpath/libtbb.dylib
Referenced from: /opt/anaconda3/envs/pf/bin/bowtie-build-s
Reason: image not found

If anybody could please advise on how to solve this issue that would be GREATLY appreciated :)

Thanks,
Syrena

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant