Make_sample_search_transaction.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "from json import dumps, loads\n",
    "from requests import get, post, put\n",
    "from IPython.display import display, Markdown\n",
    "from pathlib import Path\n",
    "import urllib.parse"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# open SDOH Resource\n",
    "example_path = r'/Users/ehaas/Documents/FHIR/US-Core-R4/input/examples/hunger-question-example.json'\n",
    "\n",
    "path = Path(example_path)\n",
    "path"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# get example\n",
    "r = loads(path.read_text())\n",
    "r"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# post to server\n",
    "#fhir_test_server = 'http://hapi.fhir.org/baseR4'\n",
    "#fhir_test_server = 'http://test.fhir.org/r4'\n",
    "fhir_test_server = 'http://wildfhir4.aegis.net/fhir4-0-1'\n",
    "#r = get(f'{fhir_test_server}/Patient', headers = headers) # test server\n",
    "r = put(f\"{fhir_test_server}/{r['resourceType']}/{r['id']}\", headers = headers, data = dumps(r))\n",
    "\n",
    "display(Markdown(f'<h1>Put Response</h1><p><strong>Transaction Status</strong> = {r.status_code}\\\n",
    "\\nraw output :</p><code>{dumps(r.json(),indent=3)}</code>'))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "http://wildfhir4.aegis.net/fhir4-0-1\n"
     ]
    }
   ],
   "source": [
    "s_type = 'Observation'\n",
    "s_id = 'hunger-question-example'\n",
    "params =  {\n",
    "    'patient':'Patient/example',\n",
    "    'category':'LG41762-2',\n",
    "    #'_id': 'hunger-question-example'\n",
    "}\n",
    "print(fhir_test_server)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/markdown": [
       "Transaction Status</strong> = 200</p>"
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "**Request**\n",
      "\n",
      "Request url using GET\n",
      "\n",
      "GET `http://wildfhir4.aegis.net/fhir4-0-1/Observation?patient=Patient/example&category=LG41762-2`\n",
      "\n",
      "Request Headers\n",
      "~~~\n",
      "User-Agent: python-requests/2.25.1\n",
      "Accept-Encoding: gzip, deflate\n",
      "Accept: application/fhir+json\n",
      "Connection: keep-alive\n",
      "Content-Type: application/fhir+json\n",
      "~~~\n",
      "**Response**\n",
      "\n",
      "200 OK\n",
      "\n",
      "Response Headers\n",
      "~~~\n",
      "Connection: keep-alive\n",
      "Content-Location: http://wildfhir4.aegis.net/fhir4-0-1/Observation?patient=Patient%2Fexample&category=LG41762-2\n",
      "Content-Type: application/fhir+json;charset=utf-8\n",
      "Content-Length: 4112\n",
      "Date: Sun, 21 Nov 2021 03:35:24 GMT\n",
      "~~~\n",
      "Response Body\n",
      "~~~\n",
      "{\n",
      "  \"resourceType\": \"Bundle\",\n",
      "  \"id\": \"c674b736-0ea3-4938-99e6-6d995d15bd84\",\n",
      "  \"meta\": {\n",
      "    \"versionId\": \"1\",\n",
      "    \"lastUpdated\": \"2021-11-20T22:35:24.010-05:00\"\n",
      "  },\n",
      "  \"type\": \"searchset\",\n",
      "  \"total\": 1,\n",
      "  \"link\": [\n",
      "    {\n",
      "      \"relation\": \"self\",\n",
      "      \"url\": \"http://wildfhir4.aegis.net/fhir4-0-1/Observation?patient=Patient%2Fexample&category=LG41762-2\"\n",
      "    }\n",
      "  ],\n",
      "  \"entry\": [\n",
      "    {\n",
      "      \"fullUrl\": \"http://wildfhir4.aegis.net/fhir4-0-1/Observation/hunger-question-example\",\n",
      "      \"resource\": {\n",
      "        \"resourceType\": \"Observation\",\n",
      "        \"id\": \"hunger-question-example\",\n",
      "        \"meta\": {\n",
      "          \"extension\": [\n",
      "            {\n",
      "              \"url\": \"http://hl7.org/fhir/StructureDefinition/instance-name\",\n",
      "              \"valueString\": \"Hunger Question Example\"\n",
      "            },\n",
      "            {\n",
      "              \"url\": \"http://hl7.org/fhir/StructureDefinition/instance-description\",\n",
      "              \"valueMarkdown\": \"This is a Hunger Question Example for the *US Core Screening Response Observation Profile*.\"\n",
      "            }\n",
      "          ],\n",
      "          \"versionId\": \"1\",\n",
      "          \"lastUpdated\": \"2021-11-20T22:13:54.070-05:00\",\n",
      "          \"profile\": [\n",
      "            \"http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-screening-response\"\n",
      "          ]\n",
      "        },\n",
      "        \"text\": {\n",
      "          \"status\": \"generated\",\n",
      "          \"div\": \"<div xmlns=\\\"http://www.w3.org/1999/xhtml\\\"><p><b>Generated Narrative with Details</b></p><p><b>meta</b>:       \\n      </p><p><b>status</b>: FINAL      \\n      </p><p><b>category</b>: SocialDeterminantsOfHealth         \\n        <span style=\\\"background: LightGoldenRodYellow\\\">(Details : {LOINC code 'LG41762-2' = 'LG41762-2', given as 'SocialDeterminantsOfHealth'})</span>, Survey         \\n        <span style=\\\"background: LightGoldenRodYellow\\\">(Details : {http://terminology.hl7.org/CodeSystem/observation-category code 'survey' = 'Survey', given as 'Survey'})</span></p><p><b>code</b>: Within the past 12 months we worried whether our food would run out before we got money to buy more [U.S. FSS]         \\n        <span style=\\\"background: LightGoldenRodYellow\\\">(Details : {LOINC code '88122-7' = 'Within the past 12 months we worried whether our food would run out before we got money to buy more [U.S. FSS]', given as 'Within the past 12 months we worried whether our food would run out before we got money to buy more [U.S. FSS]'})</span></p><p><b>subject</b>:         \\n        <a href=\\\"Patient/example\\\">Patient/example</a></p><p><b>effective</b>: Nov 12, 2021 8:59:15 PM      \\n      </p><p><b>performer</b>:         \\n        <a href=\\\"Patient/example\\\">Patient/example</a></p><p><b>value</b>: Often true         \\n        <span style=\\\"background: LightGoldenRodYellow\\\">(Details : {LOINC code 'LA28397-0' = 'Often true', given as 'Often true'})</span></p><p><b>derivedFrom</b>: Hunger Vital Signs Questionnaire      \\n      </p></div>\"\n",
      "        },\n",
      "        \"status\": \"final\",\n",
      "        \"category\": [\n",
      "          {\n",
      "            \"coding\": [\n",
      "              {\n",
      "                \"system\": \"http://loinc.org\",\n",
      "                \"code\": \"LG41762-2\",\n",
      "                \"display\": \"SocialDeterminantsOfHealth\"\n",
      "              }\n",
      "            ]\n",
      "          },\n",
      "          {\n",
      "            \"coding\": [\n",
      "              {\n",
      "                \"system\": \"http://terminology.hl7.org/CodeSystem/observation-category\",\n",
      "                \"code\": \"survey\",\n",
      "                \"display\": \"Survey\"\n",
      "              }\n",
      "            ]\n",
      "          }\n",
      "        ],\n",
      "        \"code\": {\n",
      "          \"coding\": [\n",
      "            {\n",
      "              \"system\": \"http://loinc.org\",\n",
      "              \"code\": \"88122-7\",\n",
      "              \"display\": \"Within the past 12 months we worried whether our food would run out before we got money to buy more [U.S. FSS]\"\n",
      "            }\n",
      "          ]\n",
      "        },\n",
      "        \"subject\": {\n",
      "          \"reference\": \"Patient/example\"\n",
      "        },\n",
      "        \"effectiveDateTime\": \"2021-11-12T17:59:15-08:00\",\n",
      "        \"performer\": [\n",
      "          {\n",
      "            \"reference\": \"Patient/example\"\n",
      "          }\n",
      "        ],\n",
      "        \"valueCodeableConcept\": {\n",
      "          \"coding\": [\n",
      "            {\n",
      "              \"system\": \"http://loinc.org\",\n",
      "              \"code\": \"LA28397-0\",\n",
      "              \"display\": \"Often true\"\n",
      "            }\n",
      "          ]\n",
      "        },\n",
      "        \"derivedFrom\": [\n",
      "          {\n",
      "            \"display\": \"Hunger Vital Signs Questionnaire\"\n",
      "          }\n",
      "        ]\n",
      "      },\n",
      "      \"search\": {\n",
      "        \"mode\": \"match\",\n",
      "        \"score\": 1\n",
      "      }\n",
      "    }\n",
      "  ]\n",
      "}\n",
      "~~~\n"
     ]
    }
   ],
   "source": [
    "r = get(f'{fhir_test_server}/Observation',params=params, headers=headers)\n",
    "\n",
    "display(Markdown(f'Transaction Status</strong> = {r.status_code}</p>'))\n",
    "my_resource = r.json()\n",
    "#help(r)\n",
    "#print(dumps(my_resource, indent=2))\n",
    "\n",
    "print(\"**Request**\")\n",
    "print()\n",
    "print(\"Request url using GET\")\n",
    "print()\n",
    "print(f\"GET `{urllib.parse.unquote(r.request.url)}`\")\n",
    "print()\n",
    "print(\"Request Headers\")\n",
    "print('~~~')\n",
    "for k,v in r.request.headers.items():\n",
    "    print(f'{k}: {v}')\n",
    "print('~~~')   \n",
    "    \n",
    "# print()\n",
    "# print(\"**Request Body**\")\n",
    "# print('-'*80)\n",
    "# print(r.request.body)\n",
    "print(\"**Response**\")\n",
    "print()\n",
    "print(r.status_code, r.reason)\n",
    "print()\n",
    "print(\"Response Headers\")\n",
    "print('~~~')  \n",
    "for k,v in r.headers.items():\n",
    "    print(f'{k}: {v}')\n",
    "print('~~~') \n",
    "print(\"Response Body\")\n",
    "print('~~~') \n",
    "print(dumps(r.json(), indent=2))\n",
    "print('~~~') "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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