From ba093cee1838b0b1df3f57c648bc053d4a354c80 Mon Sep 17 00:00:00 2001
From: Joshua Orvis <jorvis@gmail.com>
Date: Sun, 14 Jan 2024 22:31:21 -0600
Subject: [PATCH] URL options now handled for manually entered genes, gene
 lists, dataset collections and exact matches

---
 www/expression.html  | 2 +-
 www/index.html       | 2 +-
 www/js/expression.js | 8 ++++++--
 www/js/index.js      | 5 +++++
 4 files changed, 13 insertions(+), 4 deletions(-)

diff --git a/www/expression.html b/www/expression.html
index 51502cdd..2b232998 100644
--- a/www/expression.html
+++ b/www/expression.html
@@ -74,7 +74,7 @@
               <div class="field is-grouped">
                 <div class="control">
                   <label class="checkbox">
-                    <input type="checkbox">
+                    <input type="checkbox" id="gene-search-exact-match" >
                     Exact match
                   </label>
                 </div>  
diff --git a/www/index.html b/www/index.html
index 49f1fcec..9a65cb8c 100644
--- a/www/index.html
+++ b/www/index.html
@@ -183,7 +183,7 @@ <h3 class="mt-6 mb-3">
                         <div class="field is-grouped">
                           <div class="control">
                             <label class="checkbox">
-                              <input type="checkbox" checked>
+                              <input type="checkbox" id="gene-search-exact-match" checked>
                               Exact
                             </label>
                           </div>
diff --git a/www/js/expression.js b/www/js/expression.js
index 1dade18f..d5f745c0 100644
--- a/www/js/expression.js
+++ b/www/js/expression.js
@@ -3,7 +3,9 @@ document.addEventListener('DOMContentLoaded', () => {
     document.querySelector('#page-header-label').textContent = 'Gene Expression Search';
 
     // Handle passed URL parameters
- 
+    if (getUrlParameter('gene_symbol_exact_match') === 'true') {
+        document.querySelector('#gene-search-exact-match').checked = true;
+    }
 
 });
 
@@ -33,6 +35,8 @@ const parseDatasetCollectionURLParams = () => {
     const layout_id = getUrlParameter('layout_id');
 
     if (layout_id) {
-        selectDatasetCollection(layout_id);
+        selected_dc_share_id = layout_id;
+        selected_dc_label = dataset_collection_label_index[layout_id];
+        document.querySelector('#dropdown-dc-selector-label').innerHTML = selected_dc_label;
     }
 }
\ No newline at end of file
diff --git a/www/js/index.js b/www/js/index.js
index d94a75c9..c3188a84 100644
--- a/www/js/index.js
+++ b/www/js/index.js
@@ -24,6 +24,11 @@ document.addEventListener('DOMContentLoaded', () => {
             if (manually_entered_genes.length > 0) {
                 url += `gene_symbol=${manually_entered_genes.join(',')}`;
             }
+            
+            // are we doing exact matches?
+            if (document.querySelector('#gene-search-exact-match').checked) {
+                url += '&gene_symbol_exact_match=true';
+            }
 
             // add the gene lists
             if (Object.keys(selected_carts).length > 0) {