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I was able to "Read Nirvana JSON output by lines" following the provided python instruction. However, when I tried to "Retrieve variants under a gnomAD allele frequency threshold", I got the following Error Message
"Traceback (most recent call last):
File freq_df_01.py", line 8, in
for position in positions:
NameError: name 'positions' is not defined"
What should I do to make it work? If it worked, how can I export an output json file containing only the data that are under the defined gnomAD allele frequency threshold? thanks in advance!
The text was updated successfully, but these errors were encountered:
I was able to "Read Nirvana JSON output by lines" following the provided python instruction. However, when I tried to "Retrieve variants under a gnomAD allele frequency threshold", I got the following Error Message
"Traceback (most recent call last):
File freq_df_01.py", line 8, in
for position in positions:
NameError: name 'positions' is not defined"
What should I do to make it work? If it worked, how can I export an output json file containing only the data that are under the defined gnomAD allele frequency threshold? thanks in advance!
The text was updated successfully, but these errors were encountered: