README.Rmd

---
output: github_document
---

<!-- README.md is generated from README.Rmd. Please edit that file -->

```{r, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "README-"
)
```

# holepunch-compendium

This repository contains the data and code for our reproduction paper:

> Krystalli, A & Boettiger, C, (2018). _Partial Reproduction of Boettiger Ecology Letters 2018;21:1255–1267 with rrtools_.  <https://doi.org/{DOI-to-compendium}>

Our reproduction pre-print is online here:

> Krystalli, A & Boettiger, C, (2018). _Partial Reproduction of Boettiger Ecology Letters 2018;21:1255–1267 with rrtools_, Accessed `r format(Sys.Date(), "%d %b %Y")`. Online at <https://doi.org/{DOI-to-paper}>


### How to cite

Please cite this compendium as:

> Krystalli, A, (`r format(Sys.Date(), "%Y")`). _Compendium of R code and data for 'Partial Reproduction of Boettiger Ecology Letters 2018;21:1255–1267 with rrtools'_. Accessed `r format(Sys.Date(), "%d %b %Y")`. Online at <https://doi.org/{DOI-to-compendium}>

### How to download or install

You can download the compendium as a zip from from this URL: <https://github.com/r-rse/holepunch-compendium/archive/master.zip>


### Reproducing the paper

The paper can be found at `analysis/paper/paper.Rmd`. Open the file and
click on **knit** to reproduce the paper. Or run:

``` r
rmarkdown::render(file.path("analysis", "paper", "paper.Rmd"))
```



### Licenses

**Text and figures :**  [CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/) Copyright (c) 2018 Carl Boettiger.

**Code :** [MIT](LICENSE.md) Copyright (c) 2018 Anna Krystalli and Carl Boettiger.

**Data :** [CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/), Copyright (c) 2018 Carl Boettiger.

### Contributions

We welcome contributions from everyone. Before you get started, please see our [contributor guidelines](CONTRIBUTING.md). Please note that this project is released with a [Contributor Code of Conduct](CONDUCT.md). By participating in this project you agree to abide by its terms.