-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy path12s_ncbi_ed_cut_realn.fasta
187 lines (187 loc) · 10.1 KB
/
12s_ncbi_ed_cut_realn.fasta
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
>NC_003713_Haematopus_ater
taggattaaaatgtagctgagctgtcataagcccaagagacatctaagaccgccaccaag
atgatcctagcacctc-----gtgacctactagactccacgaaagctaaggcccaaactg
ggattagataccccactatgcctagccctaaatcccgatgc--tt-actataccaaagca
ttcgcccgagaactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctataatcgataccccacgatacacccgacccctccttgc
taaggcagcctacataccgccgtcgccagctcacctcccttgaaagtataacagtgagca
caatagtt------cgcccgctagtaagacaggtcaaggtatagcccatggagcggaaga
aatgggctacattttctaacata--gaaaa--c-acggaaggggatgtgaaaccac-ctc
cagaaggcggatttagcagtaaagcgggacaataaagcccactttaagtcggccctgggg
cacgtacataccgcccgtcaccctcc
>DQ485792_Charadrius_vociferus
taagatcaaaatgcaactgagcagtcataagcccaagatgtacctaagaccacccttaag
acgatctcagcacccc-----atgatcaattaaaccccacgaaagctaaggcccaaactg
ggattagataccccactatgcttagccctaaatcctgatgt--tt-accctaccaaaaca
tccgcccgagaactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctataatcgataacccacgatacacccgaccacttcttgc
taaggcagcctacataccgccgtcgccagctcaccttgcttgaaggtacaacagtgagca
caatagcccttt--aatccgctagcaagacaggtcaaggtatagcctatggagtggaaga
aatgggctacattttctagtata--gaaaactt-acggaagagggtgtgaaacctc-cct
cagaaggcggatttagcagtaaagtgagacaataaagcccactttaaattggccctaggg
cacgtacataccgcccgtcaccctcc
>EU167040_Charadrius_semipalmatus
taagatcaaaatgcaactgagcagtcataagcccaagatgcacctaaggccacccttaag
acgatctcagtacccc-----gtgaccgattaaaccccacgaaagctaaggcccaaactg
ggattagataccccactatgcttagccctaaatcctgatgc--tt-actctaccaaagca
tccgcccgagaactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
tccccctagaggagcctgttctataatcgataacccacgctacaccctaccactccttgc
caaggcagcctacataccgccgtcgccagctcacctcgcttgaaagtacaacagtgagca
caatagcccatc--aacccgctaacaagacaggtcaaggtatagcctatggagtggaaga
aatgggctacattttctagtata--gaaaactc-acggaagaggatgtgaaaccat-cca
cagaaggcggatttagcagtaaagtgagacaataaagcccactttaaaccggccctgggg
cacgtacataccgcccgtcaccctcc
>EF373078_Elseyornis_melanops
taagatcaaagtgcaactgagcagtcataagcccaagatgcacctaaggccgctcttaag
acgatctcagcacccc-----gcgaccaattaaactccacgaaagctaaggcccaaactg
ggattagataccccactatgcttagccctaaatctcgatgc--tt-accacaccaaagca
tccgcccgagaactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccccctagaggagcctgttctataatcgataacccacgatacacccgaccacttcttgc
caaggcagcctacataccgccgtcgccagctcacctcccttgaaagtttaacagtgagca
caacagcccatc--agtccgctaacaagacaggtcaaggtatagcccatggagtggaaga
aatgggctacattttctaacata--gaagactc-acgaaaggggatgtgaaatcat-tcc
cggaaggcggatttagcagtaaagtaagacaataaagctcactttaaaccggccctgggg
cacgtacataccgcccgtcaccctcc
>EF373113_Thinornis_novaeseelandiae
taagatcaaagtgcaactgagcagtcataagcccaagatgcatctaaggccgcccttaag
acgatctcagcacccc------cgaccaattaaaccccacgaaagctaaggcccaaactg
ggattagataccccactatgcttagccctaaatcccgatgc--tt-accctaccaaagta
tccgcccgagaactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctataatcgataacccacgatacacccgaccactccttgc
taaggcagcctacataccgccgtcgccagctcacctcccttgaaagttcaacagtgagca
taacagc-------aattcgctaacaagacaggtcaaggtatagcccatggagtggaaga
aatgggctacattttctagcata--gaaga----acggaagggggtgtgaaaccac-ccc
cagaaggcggatttagcagtaaagtgagataataaagctcactttaaaccggccctgggg
cacgtacataccgcccgtcaccctcc
>EF380263_Anarhynchus_frontalis
taagatcaaagtgcaactgagctgtcataagcacaagatgcacctaaaaccatccttaaa
acgatctcagcacccc------tgacctattaaactccacgaaagctaaggcccaaactg
ggattagataccccactatgcttagccctaaatcctgatgc--tt-actccaccaaagca
tccgcccgagaactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctataatcgataacccacgatacacccgaccactccttgc
cagggcagcctatataccgccgtcgccagctcacctcccctgaaagtgtaacagtgagca
taatagc-------aacccgctaataagacaggtcgaggtatagcctatgaagtggaaga
aatgggctacattttctaacata--gaaaa----acggaagggggtatgaaacaac-ccc
cagaaggcggatttagcagtaaaatgagacaatagtgctcactttaagttggccctgagg
cacgtacataccgcccgtcaccctcc
>EF373098_Peltohyas_australis
taagatcaaagtgcaactgagctgtcataagcacaagatgcgcctaaaaccacccttaag
acgatcttagcacccc------cgatccattaaactccacgaaagctaaggctcaaactg
ggattagataccccactatgcttagccctaaatcctgatgc--tt-atcctaccaaagca
ttcgcctgagaactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctataatcgataacccacgatacacccgaccactccttgc
caaggcagcctatataccgccgtcgccagctcacctcccctgaaagtgaaacagtgagca
taatagc-------aacccgctaataagacaggtcgaggtatagcctatggggtggaaga
gatgggctacattttctaacata--gaaaa----acggaagaggacatgaaacaat-ccc
cagaaggcggatttagcagtaaaatgagataataatgctcactttaagttggccctgagg
cacgtacataccgcccgtcaccctcc
>NC_041118_Charadrius_alexandrinus
taagatcaaagtgcaactgagctgtcataagcacaagatgcacctaaaaccacccttaag
acgatctcagcactccctccaacgacccattaaactccacgaaagctaaggcccaaactg
ggattagataccccactatgcttagccctaaatcttgatgc--tt-actcaactaaagca
tccgcccgagaactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctataatcgataacccacgatacacccgaccactccttgc
taaggcagcctatataccgccgtcgccagctcacctcccctgaaagtacaacagtgagca
taatagcctattg-agcccgctaataagacaggtcgaggtatagcccatgaagtggaaga
aatgggctacattttctaacata--gaaaaccc-acggaagggggtatgaaacaac-ccc
cagaaggcggatttagcagtaaagtgagacaatagagctcgctttaagtcggccctgagg
cacgtacataccgcccgtcaccctcc
>MW298528_Charadrius_mongolus
taagatcaaagtgcaactgagctgtcataagcacaagatgcacctaaaaccacccttaag
acgatctcagcattcccct--atgattcattaaactccacgaaagctaaggcccaaactg
ggattagataccccactatgcttagccctaaatcccgatgc--tt-accctaccaaagca
tccgcccgagaactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctataatcgataacccacgatacacccgaccactccttgc
taaggcagcctatataccgccgtcgccagctcacctcccctgaaagtacaacagtgagca
caatagcccattataacccgctaacaagacaggtcgaggtatagcccatggagtggaaga
aatgggctacattttctagcata--gaaaaccc-acggaagggggtgtgaaacaac-tcc
cagaaggcggatttagcagtaaaatgagacaatagtgctcgctttaagttggccctgagg
cacgtacataccgcccgtcaccctcc
>EF373096_Oreopholus_ruficollis
tgagaccaaaatgcagctgagctgttataagcccaagatgcacctaaaaccaccctcaag
acgatctcagcaccct------tgatttatcaaactccacgaaagctaagacccaaactg
ggattagataccccactatgcttagccctaaatcctgatgc--tt-accctaccaaagca
tccgcccgaggactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctgtaatcgataacccacgatacacccgacctctccttgc
taaggcagcctacataccgccgtcgccagctcacctcccttgaaagtataacagtgaaca
caatagc-------cacccgctaataagacaggtcaaggtatagcctatggagtggaaga
aatgggctacattttctaacata--gaaaa----acggaagggggtgtgaaaccac-ccc
ccaaaggcggatttagtagtaaagtagaacaatagagcctactttaagtcggccctgagg
cacgtacataccgcccgtcaccctcc
>EF373101_Pluvialis_squatarola
taagatcaaaacgcagctgagctgtcataagcccaagatgcacctaagaccaaccttaag
atgatcttagcgcccc------cgactaattaaaccccacgaaagctaaggcccaaactg
ggattagataccccactatgcctagccctaaatcctgatgc--tt-accctaccaaagca
tccgcctgagaactacgagcgcaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctataatcgatactccacggtacacccgaccattccttgc
caaagcagcctacataccgccgtcgccagctcacctctcttgaaagcgcagcagtgagca
caatagc-------aacccgctagtaagacaggtcgaggtatagcctatggaatgggaga
aatgggctacattttctagcata--gaaga----acggaagggagcatgaaaccgc-tcc
ccaaaggcggatttagcagtaaagtaggataataatgcctgctttaagttggccctgagg
cacgtacataccgcccgtcaccctcc
>EF373115_Vanellus_chilensis
taagatcaaaatgcaaccgagccgtcataagcccatgatgcacctaagatctcccttaaa
acgatctcagcaccct------tgatttactgca-tccacgaaagctaagatccaaactg
ggattagataccccactatgcttagccctaaatctcgatgc--tt-accccaccaaagca
tccgcccgagaactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctataatcgataacccacgatacacccggccactccttgc
ccaggcagcctacataccgccgtcgccagcccacctcctttgaaagtaaaacagtgagca
caacagt-------aattcactaataagacaggtcgaggtatagcccatggagtggaaga
aatgggctacattttctagcata--gaaaa----acggaagggggtgtgaaaccac-ccc
cagaaggcggatttagcagtaaagcggaacaataaagtccactttaagtcggccctgagg
cacgtacataccgcccgtcaccctcc
>NC_025637_Vanellus_vanellus
taagatcaaaatgcaactgagccgtcataagcccacggtgcacctaggatcccccttaaa
acgatctcagcaccct-----atgatttactaca-tccacgaaagctaagacccaaactg
ggattagataccccactatgcttagccctaaatcctgatgc--tt-accccaccaaagca
tccgcccgagaactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctataatcgataacccacgatacacccgaccactccttgc
ccaggcagcctacataccgccgtcgccagcccacctcctttgaaagtaaagcagtgggca
caatagtcaattc-aacccactaataagacaggtcgaggtatagcccatggagtggaaga
aatgggctacattttctaatata--gaaaattc-acggaagggggtgtgaaaccac-tcc
caaaaggcggatttagcagtaaagcggaacaataatgtccactttaagtcggctctgagg
cacgtacataccgcccgtcaccctcc
>EF373099_Phegornis_mitchellii
taagatcaaaatgcaactgagctgtcataacgataaggtgcacctaaaaccgccattaaa
atgatcttagca------------atctattaaactccacgaaagctaagacccaaactg
ggattagataccccactatgcttagccctaaatcctgatgc--tt-accctactaaagca
tccgcccgagaactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctataatcgataacccacgatacacccgaccactccttgc
caaggcagcctacataccgccgtcaccagcccacctcccttgagagtgcaacagtgagca
caatagcctcat--aatccgctaacaagacaggtcaaggtatagcctatggagtggaaga
aatgggatacattttctaatata--gaaaactc-acggaaaggaatgtgaaaccat-ccc
tagaaggcggatttagcagtaaaatgggacaataaagcccactttaaatcggctctgagg
cacgtacataccgcccgtcaccctcc
>EF373080_Charadrius_morinellus
tgaggctaaaatgcaactgagccgtcataagcccaagatgcacctaagaccgcccttaaa
acgacctcagcacccc-----atgacttattataccccacgaaagctaaggcccaaactg
ggattagataccccactatgcttagccctaaatcctgatgc--ttccccccaccaaagca
tccgcccgagaactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctataatcgataacccacgatacacccgaccacttcttgc
caaggcagcctacataccgccgtcgccagctcacctcatctgaaagcataacagtgagca
caatagcccta---aatccgctaataagacaggtcaaggtatagcctatggagtggaaga
aatgggctacattttctagtatatagaaaactc-acggaagagagtgtgaaatcactccc
tagaaggcggatttagcagtaaagtagaataattatgcctactttaagccggctctgggg
tacgtacataccgcccgtcaccctcc
>EF373079_Erythrogonys_cinctus
tgagaccaaaatacaactaagctgtcataagcataagctgtacctaagacctctcttaaa
atgatctcagcaccct-----gcgacttattaaaccccacgaaagctaagacccaaactg
ggattagataccccactatgcttagccctaaattttgatgctttt-tccccactaaagca
tccgcccgaggactacgagcacaaacgcttaaaactctaaggacttggcggtgccccaaa
cccacctagaggagcctgttctgtaatcgataatccacgatacacccgaccgtcccttgc
caaagcagcctacataccgccgtcgccagttcacctactttgaaagtgtaacagtgaaca
caatagtaaaat--aatccactagcaaggcaggtcgaggtatagcccatgggacggaaga
aatgggctacattttctagaata--gaaaatttaacggaaggggacatgaaatgat-ccc
cagaaggcggatttagcagtaaagtgagacaatagagcttacttaaagctggctctgggg
cacgtacataccgcccgtcaccctcc
>KF357995_Charadrius_obscurus
taagatcaaartgcaactgagctgtcataagcacaagatacacctaarrccacccnnnnn
nnnnnnnnnnnnccccctc-ancgacctattagactccacgaaagctaaggcccaaactg
ggattagataccccactatgcttagccctaaatcctgatgc--tt-actccaccaaagca
tccgccygagaa------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------