From 9c83ec6f76aef50c27de9bb055e319fd906cc1d7 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?J=C3=BAlio=20Hoffimann?= Date: Mon, 21 Oct 2024 09:52:34 -0300 Subject: [PATCH] Update environment --- 03-geoio.qmd | 2 +- 05-transforms.qmd | 2 - 10-correlation.qmd | 27 +-- 11-interpolation.qmd | 6 +- 12-mining.qmd | 22 +- Manifest.toml | 487 ++++++++++++++++++++++++------------------- _quarto.yml | 2 +- preface.qmd | 10 +- 8 files changed, 304 insertions(+), 254 deletions(-) diff --git a/03-geoio.qmd b/03-geoio.qmd index 21783d1..8aaaac0 100644 --- a/03-geoio.qmd +++ b/03-geoio.qmd @@ -94,7 +94,7 @@ geotable = GeoIO.load("data/earth.tif") ``` If we save the geotable to a `.geojson` file on disk, and then load it back, -we observe that the `CartesianGrid` gets replaced by a `GeometrySet`: +we observe that the grid gets replaced by a geometry set: ```{julia} fname = tempname() * ".geojson" diff --git a/05-transforms.qmd b/05-transforms.qmd index 1c74252..cd54978 100644 --- a/05-transforms.qmd +++ b/05-transforms.qmd @@ -362,8 +362,6 @@ are the `Continuous` and the `Categorical` scientific traits. To convert (or coe scientific traits of columns in a geotable, we can use the `Coerce` transform: ```{julia} -using GeoStats.DataScienceTraits: Continuous - st = georef((a=[1,2,2,2,3,3], b=[1,2,3,4,5,6])) |> Coerce("b" => Continuous) ``` diff --git a/10-correlation.qmd b/10-correlation.qmd index 7162182..48fb73f 100644 --- a/10-correlation.qmd +++ b/10-correlation.qmd @@ -180,12 +180,15 @@ n = 0.1 m = GaussianVariogram g = m(range=r, sill=s, nugget=n) +xs = range(1.0e-6, 30.0, length=100) +ys = g.(xs) + fig = Mke.Figure() -Mke.Axis(fig[1,1], xlabel="h", ylabel="γ(h)", limits = (nothing, nothing, 0, 1.1)) -Mke.plot!(g, maxlag=25, label="model") -Mke.vlines!(r, color="black", linestyle=:dash, label="range") -Mke.hlines!(s, color="teal", linestyle=:dash, label="sill") -Mke.hlines!(n, color="teal", linestyle=:dot, label="nugget") +ax = Mke.Axis(fig[1,1], xlabel="h", ylabel="γ(h)", limits = (nothing, nothing, 0, 1.1)) +Mke.lines!(ax, xs, ys, color="slategray", label="model") +Mke.vlines!(ax, r, color="black", linestyle=:dash, label="range") +Mke.hlines!(ax, s, color="teal", linestyle=:dash, label="sill") +Mke.hlines!(ax, n, color="teal", linestyle=:dot, label="nugget") Mke.axislegend("Elements", position = :rc) fig ``` @@ -314,9 +317,9 @@ geospatial correlation. The most widely used are the `GaussianVariogram`, the fig = Mke.Figure() Mke.Axis(fig[1,1]) -Mke.plot!(γ1, maxlag=2, vcolor = "teal", label = "Gaussian") -Mke.plot!(γ2, maxlag=2, vcolor = "slategray3", label = "Spherical") -Mke.plot!(γ3, maxlag=2, vcolor = "brown", label = "Exponential") +varioplot!(γ1, maxlag=2.0, color = "teal", label = "Gaussian") +varioplot!(γ2, maxlag=2.0, color = "slategray3", label = "Spherical") +varioplot!(γ3, maxlag=2.0, color = "brown", label = "Exponential") Mke.axislegend("Model", position = :rb) fig ``` @@ -406,7 +409,7 @@ g = EmpiricalVariogram(img, :Z, maxlag = 50.0) ``` ```{julia} -Mke.plot(g) +varioplot(g) ``` ::: {.callout-note} @@ -424,8 +427,8 @@ specific directions: gₕ = DirectionalVariogram((1.0, 0.0), img, :Z, maxlag = 50.0) gᵥ = DirectionalVariogram((0.0, 1.0), img, :Z, maxlag = 50.0) -Mke.plot(gₕ, hshow = false, vcolor = "maroon") -Mke.plot!(gᵥ, hshow = false, vcolor = "slategray") +varioplot(gₕ, showhist = false, color = "maroon") +varioplot!(gᵥ, showhist = false, color = "slategray") Mke.current_figure() ``` @@ -447,7 +450,7 @@ solid curve over the heatmap: ```{julia} fig = Mke.Figure() ax = Mke.PolarAxis(fig[1,1]) -Mke.plot!(ax, gₚ) +varioplot!(ax, gₚ) fig ``` diff --git a/11-interpolation.qmd b/11-interpolation.qmd index e1408e7..46cc59d 100644 --- a/11-interpolation.qmd +++ b/11-interpolation.qmd @@ -220,7 +220,7 @@ g = EmpiricalVariogram(samples, "Z", maxlag = 100.0) ``` ```{julia} -Mke.plot(g) +varioplot(g) ``` A better alternative in this case is to use the robust `:cressie` @@ -231,7 +231,7 @@ g = EmpiricalVariogram(samples, "Z", maxlag = 100.0, estimator = :cressie) ``` ```{julia} -Mke.plot(g) +varioplot(g) ``` After estimating the empirical variogram, the next step consists of fitting @@ -242,7 +242,7 @@ a theoretical model. The behavior near the origin resembles a `SphericalVariogra ``` ```{julia} -Mke.plot(γ, maxlag = 100.0) +varioplot(γ, maxlag = 100.0) ``` Now that we extracted the geospatial correlation from the samples, we can diff --git a/12-mining.qmd b/12-mining.qmd index 0c4d83c..aa54ac7 100644 --- a/12-mining.qmd +++ b/12-mining.qmd @@ -155,18 +155,11 @@ elements, we visualize the `values` of the drill hole samples with the `pairplot`: ```{julia} -dtable |> Select("Cu", "Au", "Ag", "S") |> DropUnits() |> values |> pairplot +dtable |> Select("Cu", "Au", "Ag", "S") |> values |> pairplot ``` We can observe that the distribution is very skewed. -::: {.callout-note} - -The `DropUnits` transform can be useful to drop units from the columns of a -table before calling functions that do not support units yet (e.g., `pairplot`). - -::: - ### Domain of interpolation Before we can interpolate these variables, we need to define our domain of interpolation. @@ -274,7 +267,7 @@ In order to remove compositional data constraints, we will perform the centered transform (`CLR`) from the [CoDa.jl](https://github.com/JuliaEarth/CoDa.jl) module: ```{julia} -grades = dtable |> Select("Cu", "Au", "Ag", "S") |> DropUnits() +grades = dtable |> Select("Cu", "Au", "Ag", "S") grades |> CLR() |> values |> pairplot ``` @@ -306,12 +299,15 @@ samples #### Geospatial correlation -Let's fit a theoretical variogram for all four (independent) variables: +Let's fit a theoretical variogram for all four (independent) variables +up to a given maximum lag: ```{julia} +maxlag = 300.0u"m" + ns = setdiff(names(samples), ["geometry"]) -gs = [EmpiricalVariogram(samples, n, estimator = :cressie) for n in ns] +gs = [EmpiricalVariogram(samples, n, maxlag = maxlag) for n in ns] γs = [GeoStatsFunctions.fit(Variogram, g, h -> 1 / h^2) for g in gs] ``` @@ -327,8 +323,8 @@ model. The constant `100` was chosen based on visual inspection of the ```{julia} function gammaplot(n, g, γ) - Mke.plot(g, axis = (; title = n)) - Mke.plot!(γ, maxlag = 300, vcolor = "teal") + varioplot(g, axis = (; title = n)) + varioplot!(γ, maxlag = maxlag, color = "teal") Mke.current_figure() end diff --git a/Manifest.toml b/Manifest.toml index e40bbf0..9f27ce0 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -1,6 +1,6 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.4" +julia_version = "1.11.1" manifest_format = "2.0" project_hash = "853934a9b71c7c83b180313ea8cc71c534f9a32b" @@ -21,24 +21,28 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.5" [[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] -git-tree-sha1 = "f61b15be1d76846c0ce31d3fcfac5380ae53db6a" +deps = ["CompositionsBase", "ConstructionBase", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown"] +git-tree-sha1 = "b392ede862e506d451fc1616e79aa6f4c673dab8" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.37" +version = "0.1.38" [deps.Accessors.extensions] AccessorsAxisKeysExt = "AxisKeys" + AccessorsDatesExt = "Dates" AccessorsIntervalSetsExt = "IntervalSets" AccessorsStaticArraysExt = "StaticArrays" AccessorsStructArraysExt = "StructArrays" + AccessorsTestExt = "Test" AccessorsUnitfulExt = "Unitful" [deps.Accessors.weakdeps] AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" Requires = "ae029012-a4dd-5104-9daa-d747884805df" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] @@ -52,9 +56,9 @@ weakdeps = ["StaticArrays"] AdaptStaticArraysExt = "StaticArrays" [[deps.AdaptivePredicates]] -git-tree-sha1 = "7d5da5dd472490d048b081ca1bda4a7821b06456" +git-tree-sha1 = "7e651ea8d262d2d74ce75fdf47c4d63c07dba7a6" uuid = "35492f91-a3bd-45ad-95db-fcad7dcfedb7" -version = "1.1.1" +version = "1.2.0" [[deps.AliasTables]] deps = ["PtrArrays", "Random"] @@ -85,7 +89,7 @@ version = "2.3.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -95,9 +99,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "f54c23a5d304fb87110de62bace7777d59088c34" +git-tree-sha1 = "3640d077b6dafd64ceb8fd5c1ec76f7ca53bcf76" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.15.0" +version = "7.16.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,12 +145,13 @@ version = "10.0.0+1" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Automa]] -deps = ["PrecompileTools", "TranscodingStreams"] -git-tree-sha1 = "014bc22d6c400a7703c0f5dc1fdc302440cf88be" +deps = ["PrecompileTools", "SIMD", "TranscodingStreams"] +git-tree-sha1 = "a8f503e8e1a5f583fbef15a8440c8c7e32185df2" uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b" -version = "1.0.4" +version = "1.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] @@ -177,6 +182,7 @@ weakdeps = ["ChainRulesCore", "DataFrames", "StaticArrays", "StructArrays", "Tab [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -190,21 +196,21 @@ version = "0.2.8" [[deps.BitIntegers]] deps = ["Random"] -git-tree-sha1 = "a55462dfddabc34bc97d3a7403a2ca2802179ae6" +git-tree-sha1 = "6158239ac409f960abbc232a9b24c00f5cce3108" uuid = "c3b6d118-76ef-56ca-8cc7-ebb389d030a1" -version = "0.3.1" +version = "0.3.2" [[deps.Blosc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Lz4_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "19b98ee7e3db3b4eff74c5c9c72bf32144e24f10" +git-tree-sha1 = "ef12cdd1c7fb7e1dfd6fa8fd60d4db6bc61d2f23" uuid = "0b7ba130-8d10-5ba8-a3d6-c5182647fed9" -version = "1.21.5+0" +version = "1.21.6+0" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+1" +version = "1.0.8+2" [[deps.CEnum]] git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" @@ -219,6 +225,7 @@ version = "0.1.3" [[deps.CRC32c]] uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc" +version = "1.11.0" [[deps.CRlibm_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -228,9 +235,9 @@ version = "1.0.1+0" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "6c834533dc1fabd820c1db03c839bf97e45a3fab" +git-tree-sha1 = "deddd8725e5e1cc49ee205a1964256043720a6c3" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.14" +version = "0.10.15" [[deps.Cairo]] deps = ["Cairo_jll", "Colors", "Glib_jll", "Graphics", "Libdl", "Pango_jll"] @@ -270,25 +277,24 @@ version = "0.6.0" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "227985d885b4dbce5e18a96f9326ea1e836e5a03" +git-tree-sha1 = "be227d253d132a6d57f9ccf5f67c0fb6488afd87" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.69.0" +version = "1.71.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "71acdbf594aab5bbb2cec89b208c41b4c411e49f" +git-tree-sha1 = "3e4b134270b372f2ed4d4d0e936aabaefc1802bc" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.24.0" +version = "1.25.0" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChunkSplitters]] -deps = ["Compat", "TestItems"] -git-tree-sha1 = "783507c1f2371c8f2d321f41c3057ecd42cafa83" +git-tree-sha1 = "397b871ff701290cc122cca06af61c5bdf9f5605" uuid = "ae650224-84b6-46f8-82ea-d812ca08434e" -version = "2.4.5" +version = "3.1.0" [[deps.CircularArrays]] deps = ["OffsetArrays"] @@ -322,9 +328,9 @@ version = "0.7.6" [[deps.CodecZstd]] deps = ["TranscodingStreams", "Zstd_jll"] -git-tree-sha1 = "5e41a52bec3b0881a7eb54f5391b779994504186" +git-tree-sha1 = "d0073f473757f0d39ac9707f1eb03b431573cbd8" uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2" -version = "0.8.5" +version = "0.8.6" [[deps.ColorBrewer]] deps = ["Colors", "JSON", "Test"] @@ -356,9 +362,9 @@ weakdeps = ["SpecialFunctions"] [[deps.Colorfy]] deps = ["ColorSchemes", "Colors", "Dates"] -git-tree-sha1 = "ca4a43ecb1ebf99b7969b8e771c59380bef4420e" +git-tree-sha1 = "7339fd7714bb1fea9cc6c530f255980cba64b4f4" uuid = "03fe91ce-8ec6-4610-8e8d-e7491ccca690" -version = "0.1.6" +version = "1.0.0" weakdeps = ["CategoricalArrays", "Distributions", "Unitful"] [deps.Colorfy.extensions] @@ -373,9 +379,9 @@ uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.12.11" [[deps.ColumnSelectors]] -git-tree-sha1 = "221157488d6e5942ef8cc53086cad651b632ed4e" +git-tree-sha1 = "4db9a3c36098eb6b80e1e60f53448926094166de" uuid = "9cc86067-7e36-4c61-b350-1ac9833d277f" -version = "0.1.1" +version = "1.0.0" [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" @@ -424,14 +430,14 @@ weakdeps = ["InverseFunctions"] CompositionsBaseInverseFunctionsExt = "InverseFunctions" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "a33b7ced222c6165f624a3f2b55945fac5a598d9" +git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.7" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.5.8" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] @@ -441,9 +447,9 @@ version = "0.6.3" [[deps.CoordRefSystems]] deps = ["Random", "Rotations", "StaticArrays", "Unitful", "Zygote"] -git-tree-sha1 = "cde7d6b834fac22555cf3d545af516328b989e58" +git-tree-sha1 = "c4ec1675cf7a03048c0b2d4c429c1c8ef24ae06b" uuid = "b46f11dc-f210-4604-bfba-323c1ec968cb" -version = "0.12.1" +version = "0.15.0" [[deps.CpuId]] deps = ["Markdown"] @@ -468,16 +474,16 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "fb61b4812c49343d7ef0b533ba982c46021938a6" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.7.0" [[deps.DataScienceTraits]] deps = ["Dates"] -git-tree-sha1 = "6d67b7e53c9e9ae5d3c2ade431e942befdd3c0a8" +git-tree-sha1 = "07df9da606a30dbcea827ace56ed198661e6f769" uuid = "6cb2f572-2d2b-4ba6-bdb3-e710fa044d6c" -version = "0.4.6" +version = "1.0.0" [deps.DataScienceTraits.extensions] DataScienceTraitsCategoricalArraysExt = "CategoricalArrays" @@ -511,6 +517,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.DecFP]] deps = ["DecFP_jll", "Printf", "Random", "SpecialFunctions"] @@ -536,10 +543,10 @@ uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" version = "0.1.2" [[deps.DelaunayTriangulation]] -deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"] -git-tree-sha1 = "b5f1c6532d2ea71e99b74231b0a3d53fba846ced" +deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "PrecompileTools", "Random"] +git-tree-sha1 = "89df54fbe66e5872d91d8c2cd3a375f660c3fd64" uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" -version = "1.1.3" +version = "1.6.1" [[deps.DelimitedFiles]] deps = ["Mmap"] @@ -549,9 +556,9 @@ version = "1.9.1" [[deps.DensityRatioEstimation]] deps = ["LinearAlgebra", "Parameters", "Random", "Statistics", "StatsBase"] -git-tree-sha1 = "515b14931e768c2d2f6c1d0a4c81653ee2f7d693" +git-tree-sha1 = "3efd6bc6235d9cb2d73605f57fbf656a7dd6e461" uuid = "ab46fb84-d57c-11e9-2f65-6f72e4a7229f" -version = "1.2.4" +version = "1.2.5" [deps.DensityRatioEstimation.extensions] DensityRatioEstimationChainRulesCoreExt = "ChainRulesCore" @@ -607,12 +614,13 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "e6c693a0e4394f8fda0e51a5bdf5aef26f8235e9" +git-tree-sha1 = "d7477ecdafb813ddee2ae727afa94e9dcb5f3fb0" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.111" +version = "0.25.112" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -677,9 +685,9 @@ version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +git-tree-sha1 = "4d81ed14783ec49ce9f2e168208a12ce1815aa25" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" +version = "3.3.10+1" [[deps.FNVHash]] git-tree-sha1 = "d6de2c735a8bffce9bc481942dfa453cc815357e" @@ -688,9 +696,9 @@ version = "0.1.0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" +git-tree-sha1 = "62ca0547a14c57e98154423419d8a342dca75ca9" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.3" +version = "1.16.4" [[deps.FilePaths]] deps = ["FilePathsBase", "MacroTools", "Reexport", "Requires"] @@ -711,12 +719,13 @@ weakdeps = ["Mmap", "Test"] [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fd0002c0b5362d7eb952450ad5eb742443340d6e" +git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.12.0" +version = "1.13.0" weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -725,19 +734,21 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] FillArraysStatisticsExt = "Statistics" [[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield", "SparseArrays"] -git-tree-sha1 = "f9219347ebf700e77ca1d48ef84e4a82a6701882" +deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] +git-tree-sha1 = "b10bdafd1647f57ace3885143936749d61638c3b" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.24.0" +version = "2.26.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffSparseArraysExt = "SparseArrays" FiniteDiffStaticArraysExt = "StaticArrays" [deps.FiniteDiff.weakdeps] BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.FixedPointNumbers]] @@ -794,6 +805,7 @@ version = "1.0.14+0" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GDAL]] deps = ["CEnum", "GDAL_jll", "NetworkOptions", "PROJ_jll"] @@ -809,9 +821,9 @@ version = "301.800.400+0" [[deps.GEOS_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a190d1f793963b93be8fd37cf36d319ac682d2dd" +git-tree-sha1 = "f561356a09a8f650b622f6697a30f2ad76fc29ce" uuid = "d604d12d-fa86-5845-992e-78dc15976526" -version = "3.12.2+0" +version = "3.13.0+0" [[deps.GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] @@ -822,7 +834,7 @@ version = "1.9.0" [[deps.GMP_jll]] deps = ["Artifacts", "Libdl"] uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" -version = "6.2.1+6" +version = "6.3.0+0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] @@ -843,10 +855,10 @@ uuid = "b16dfd50-4035-11e9-28d4-9dfe17e6779b" version = "0.4.0" [[deps.GRIBDatasets]] -deps = ["CommonDataModel", "DataStructures", "Dates", "DiskArrays", "GRIB"] -git-tree-sha1 = "1cc2d251d8cdb902c82ebe6e56d0ea692ae05359" +deps = ["CommonDataModel", "DataStructures", "Dates", "DiskArrays", "GRIB", "eccodes_jll"] +git-tree-sha1 = "4ab907e8579e9cceed8fdff3c4a2dc3823209e14" uuid = "82be9cdb-ee19-4151-bdb3-b400788d9abc" -version = "0.3.2" +version = "0.4.0" [[deps.GeoFormatTypes]] git-tree-sha1 = "59107c179a586f0fe667024c5eb7033e81333271" @@ -855,15 +867,15 @@ version = "0.4.2" [[deps.GeoIO]] deps = ["ArchGDAL", "CSV", "Colors", "CommonDataModel", "CoordRefSystems", "FileIO", "Format", "GRIBDatasets", "GeoFormatTypes", "GeoInterface", "GeoJSON", "GeoParquet", "GeoTables", "GslibIO", "ImageCore", "ImageIO", "Meshes", "NCDatasets", "PlyIO", "PrecompileTools", "PrettyTables", "ReadVTK", "Shapefile", "StaticArrays", "Tables", "TransformsBase", "Unitful", "VTKBase", "WriteVTK"] -git-tree-sha1 = "ace29c5ea4ae08ff692902ca79c43ae1b9648eec" +git-tree-sha1 = "c2bcf678ba0e40a4143cd6914acf7b21ed48dcf3" uuid = "f5a160d5-e41d-4189-8b61-d57781c419e3" -version = "1.17.6" +version = "1.18.6" [[deps.GeoInterface]] -deps = ["Extents"] -git-tree-sha1 = "9fff8990361d5127b770e3454488360443019bb3" +deps = ["Extents", "GeoFormatTypes"] +git-tree-sha1 = "2f6fce56cdb8373637a6614e14a5768a88450de2" uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" -version = "1.3.5" +version = "1.3.7" [[deps.GeoInterfaceMakie]] deps = ["GeoInterface", "GeometryBasics", "MakieCore"] @@ -895,41 +907,41 @@ version = "0.2.1" [[deps.GeoStats]] deps = ["CategoricalArrays", "Chain", "CoDa", "CoordRefSystems", "DataScienceTraits", "Dates", "DensityRatioEstimation", "Distances", "GeoStatsBase", "GeoStatsFunctions", "GeoStatsModels", "GeoStatsProcesses", "GeoStatsTransforms", "GeoStatsValidation", "GeoTables", "LossFunctions", "Meshes", "Reexport", "Rotations", "Statistics", "StatsLearnModels", "TableTransforms", "Tables", "Unitful"] -git-tree-sha1 = "0875695ae3acc5fcc91b2f169315ececa80b6394" +git-tree-sha1 = "76a3fd61af197badf552c13365b80e392774dafb" uuid = "dcc97b0b-8ce5-5539-9008-bb190f959ef6" -version = "0.65.0" +version = "0.70.1" [[deps.GeoStatsBase]] -deps = ["CategoricalArrays", "ColumnSelectors", "DataScienceTraits", "DensityRatioEstimation", "Distances", "GeoTables", "LinearAlgebra", "Meshes", "Optim", "Rotations", "StaticArrays", "Statistics", "StatsBase", "Tables", "TypedTables", "Unitful"] -git-tree-sha1 = "28bde7a5fabe5c1606ade2a095837f9491446f3c" +deps = ["CategoricalArrays", "ColumnSelectors", "DataScienceTraits", "DensityRatioEstimation", "Distances", "Distributions", "GeoTables", "LinearAlgebra", "Meshes", "Optim", "Rotations", "StaticArrays", "StatsBase", "Tables", "TypedTables", "Unitful"] +git-tree-sha1 = "722f160a6d2e5ee30c9ec3401b5406f23b5cd826" uuid = "323cb8eb-fbf6-51c0-afd0-f8fba70507b2" -version = "0.45.5" +version = "0.46.2" weakdeps = ["Makie"] [deps.GeoStatsBase.extensions] GeoStatsBaseMakieExt = "Makie" [[deps.GeoStatsFunctions]] -deps = ["Bessels", "Distances", "GeoTables", "InteractiveUtils", "LinearAlgebra", "Meshes", "NearestNeighbors", "OhMyThreads", "Optim", "Printf", "Random", "Setfield", "Statistics", "Tables", "Unitful"] -git-tree-sha1 = "ff289d60058238f7b4262645d3ca2ebc555df996" +deps = ["Bessels", "CategoricalArrays", "DataScienceTraits", "Distances", "GeoTables", "InteractiveUtils", "LinearAlgebra", "Meshes", "NearestNeighbors", "OhMyThreads", "Optim", "PrecompileTools", "Printf", "Random", "Setfield", "StaticArrays", "Statistics", "TableTransforms", "Tables", "Unitful"] +git-tree-sha1 = "9f3a57f4954825d3ad7dff8b2b2ccf18ac916b40" uuid = "6771c435-bc22-4842-b0c3-41852a255103" -version = "0.4.9" +version = "0.5.3" weakdeps = ["Makie"] [deps.GeoStatsFunctions.extensions] GeoStatsFunctionsMakieExt = "Makie" [[deps.GeoStatsModels]] -deps = ["Combinatorics", "Distances", "Distributions", "GeoStatsFunctions", "GeoTables", "LinearAlgebra", "Meshes", "Statistics", "Tables", "Unitful"] -git-tree-sha1 = "685a774b3507e3486c59d2168a7b48b50cfb2a7d" +deps = ["Combinatorics", "CoordRefSystems", "Distances", "Distributions", "GeoStatsFunctions", "GeoTables", "LinearAlgebra", "Meshes", "Statistics", "Tables", "Unitful"] +git-tree-sha1 = "9d29250cee0331d0356e85829c0e322b241c0bf5" uuid = "ad987403-13c5-47b5-afee-0a48f6ac4f12" -version = "0.4.8" +version = "0.6.1" [[deps.GeoStatsProcesses]] -deps = ["Bessels", "CpuId", "Distances", "Distributed", "Distributions", "FFTW", "GeoStatsBase", "GeoStatsFunctions", "GeoStatsModels", "GeoTables", "LinearAlgebra", "Meshes", "ProgressMeter", "Random", "Statistics", "Tables", "Unitful"] -git-tree-sha1 = "9651f913ac259ad29a71cccea3ced6a7f6ab079f" +deps = ["Bessels", "CpuId", "Distances", "Distributed", "Distributions", "FFTW", "GeoStatsFunctions", "GeoStatsModels", "GeoTables", "LinearAlgebra", "Meshes", "ProgressMeter", "Random", "Statistics", "Tables", "Unitful"] +git-tree-sha1 = "ed207e0b74e973ecacbf772cf810972c8f97bf8e" uuid = "aa102bde-5a27-4b0c-b2c1-e7a7dcc4c3e7" -version = "0.6.14" +version = "0.8.2" [deps.GeoStatsProcesses.extensions] GeoStatsProcessesImageQuiltingExt = "ImageQuilting" @@ -943,21 +955,21 @@ version = "0.6.14" [[deps.GeoStatsTransforms]] deps = ["ArnoldiMethod", "CategoricalArrays", "Clustering", "ColumnSelectors", "Combinatorics", "DataScienceTraits", "Distances", "GeoStatsModels", "GeoStatsProcesses", "GeoTables", "LinearAlgebra", "Meshes", "OhMyThreads", "PrecompileTools", "Random", "SparseArrays", "Statistics", "TableDistances", "TableTransforms", "Tables", "TiledIteration", "Unitful"] -git-tree-sha1 = "85aa8fcfd41321628da6fddf97e7171cc28cec00" +git-tree-sha1 = "23523da529e73e1bbf81808e6a682d4800aab7a5" uuid = "725d9659-360f-4996-9c94-5f19c7e4a8a6" -version = "0.7.15" +version = "0.8.5" [[deps.GeoStatsValidation]] deps = ["ColumnSelectors", "DataScienceTraits", "DensityRatioEstimation", "GeoStatsBase", "GeoStatsModels", "GeoStatsTransforms", "GeoTables", "LossFunctions", "Meshes", "StatsLearnModels"] -git-tree-sha1 = "7584d91e75c3a28643fbbc891a59d859e6361a4d" +git-tree-sha1 = "b9b0193866245e6cbe7f6a386417b2180f220967" uuid = "36f43c0d-3673-45fc-9557-6860e708e7aa" -version = "0.3.11" +version = "0.3.17" [[deps.GeoTables]] deps = ["CategoricalArrays", "Colorfy", "ColumnSelectors", "CoordRefSystems", "DataAPI", "DataScienceTraits", "Dates", "Distributions", "IteratorInterfaceExtensions", "Meshes", "PrettyTables", "Random", "Statistics", "TableTraits", "Tables", "TransformsBase", "Unitful"] -git-tree-sha1 = "91720ec9a8a78e4750ef74e3e83ecf3211d480c2" +git-tree-sha1 = "0b13686a9a00bf0e5e813f33882b429d892a1e52" uuid = "e502b557-6362-48c1-8219-d30d308dcdb0" -version = "1.23.7" +version = "1.24.5" weakdeps = ["Makie", "TableTransforms"] [deps.GeoTables.extensions] @@ -978,9 +990,9 @@ version = "0.21.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +git-tree-sha1 = "674ff0db93fffcd11a3573986e550d66cd4fd71f" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.80.2+0" +version = "2.80.5+0" [[deps.GnuTLS_jll]] deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Nettle_jll", "P11Kit_jll", "Zlib_jll"] @@ -1013,9 +1025,9 @@ version = "1.0.2" [[deps.GslibIO]] deps = ["DelimitedFiles", "GeoTables", "Meshes", "Printf", "Tables", "Unitful"] -git-tree-sha1 = "39421806e8d19547dcf7ca0c3485055a8f25bb51" +git-tree-sha1 = "9a22e24994cc11b387e02513fef93173d4f2e90e" uuid = "4610876b-9b01-57c8-9ad9-06315f1a66a5" -version = "1.5.7" +version = "1.5.9" [[deps.HDF5_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] @@ -1036,9 +1048,9 @@ version = "0.2.0" [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "5e19e1e4fa3e71b774ce746274364aef0234634e" +git-tree-sha1 = "dd3b49277ec2bb2c6b94eb1604d4d0616016f7a6" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.11.1+0" +version = "2.11.2+0" [[deps.HypergeometricFunctions]] deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] @@ -1133,14 +1145,15 @@ version = "1.4.2" Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "14eb2b542e748570b56446f4c50fbfb2306ebc45" +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "10bd689145d2c3b2a9844005d01087cc1194e79e" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.2.0+0" +version = "2024.2.1+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] @@ -1154,14 +1167,16 @@ weakdeps = ["Unitful"] [[deps.IntervalArithmetic]] deps = ["CRlibm_jll", "MacroTools", "RoundingEmulator"] -git-tree-sha1 = "433b0bb201cd76cb087b017e49244f10394ebe9c" +git-tree-sha1 = "8e125d40cae3a9f4276cdfeb4fcdb1828888a4b3" uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" -version = "0.22.14" -weakdeps = ["DiffRules", "ForwardDiff", "RecipesBase"] +version = "0.22.17" +weakdeps = ["DiffRules", "ForwardDiff", "IntervalSets", "LinearAlgebra", "RecipesBase"] [deps.IntervalArithmetic.extensions] IntervalArithmeticDiffRulesExt = "DiffRules" IntervalArithmeticForwardDiffExt = "ForwardDiff" + IntervalArithmeticIntervalSetsExt = "IntervalSets" + IntervalArithmeticLinearAlgebraExt = "LinearAlgebra" IntervalArithmeticRecipesBaseExt = "RecipesBase" [[deps.IntervalSets]] @@ -1176,9 +1191,9 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] -git-tree-sha1 = "2787db24f4e03daf859c6509ff87764e4182f7d1" +git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.16" +version = "0.1.17" weakdeps = ["Dates", "Test"] [deps.InverseFunctions.extensions] @@ -1213,9 +1228,9 @@ version = "1.0.0" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +git-tree-sha1 = "be3dc50a92e5a386872a493a10050136d4703f9b" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" +version = "1.6.1" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -1225,9 +1240,9 @@ version = "0.21.4" [[deps.JSON3]] deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"] -git-tree-sha1 = "eb3edce0ed4fa32f75a0a11217433c31d56bd48b" +git-tree-sha1 = "1d322381ef7b087548321d3f878cb4c9bd8f8f9b" uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" -version = "1.14.0" +version = "1.14.1" [deps.JSON3.extensions] JSON3ArrowExt = ["ArrowTypes"] @@ -1243,9 +1258,9 @@ version = "0.1.5" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +git-tree-sha1 = "25ee0be4d43d0269027024d75a24c24d6c6e590c" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.0.3+0" +version = "3.0.4+0" [[deps.Kerberos_krb5_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1273,9 +1288,9 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "b351d72436ddecd27381a07c242ba27282a6c8a7" +git-tree-sha1 = "4ad43cb0a4bb5e5b1506e1d1f48646d7e0c80363" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.0.0" +version = "9.1.2" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1285,15 +1300,15 @@ version = "9.0.0" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "f42bec1e12f42ec251541f6d0482d520a4638b17" +git-tree-sha1 = "05a8bd5a42309a9ec82f700876903abce1017dd3" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.33+0" +version = "0.0.34+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e16271d212accd09d52ee0ae98956b8a05c4b626" +git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "17.0.6+0" +version = "18.1.7+0" [[deps.LRUCache]] git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" @@ -1306,14 +1321,14 @@ weakdeps = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +git-tree-sha1 = "854a9c268c43b77b0a27f22d7fab8d33cdb3a731" uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.2+0" +version = "2.10.2+1" [[deps.LaTeXStrings]] -git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.1" +version = "1.4.0" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] @@ -1328,6 +1343,7 @@ weakdeps = ["StaticArrays"] [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LazyModules]] git-tree-sha1 = "a560dd966b386ac9ae60bdd3a3d3a326062d3c3e" @@ -1342,16 +1358,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibPQ_jll]] deps = ["Artifacts", "ICU_jll", "JLLWrappers", "Kerberos_krb5_jll", "Libdl", "OpenSSL_jll", "Zstd_jll"] @@ -1366,6 +1383,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1411,9 +1429,9 @@ version = "2.40.1+0" [[deps.LightBSON]] deps = ["DataStructures", "Dates", "DecFP", "FNVHash", "JSON3", "Sockets", "StructTypes", "Transducers", "UUIDs", "UnsafeArrays", "WeakRefStrings"] -git-tree-sha1 = "1c98cccebf21f97c5a0cc81ff8cebffd1e14fb0f" +git-tree-sha1 = "ce253ad53efeed8201656971874d8cd9dad0227e" uuid = "a4a7f996-b3a6-4de6-b9db-2fa5f350df41" -version = "0.2.20" +version = "0.2.21" [[deps.LightXML]] deps = ["Libdl", "XML2_jll"] @@ -1430,6 +1448,7 @@ version = "7.3.0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LittleCMS_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll"] @@ -1455,6 +1474,7 @@ version = "0.3.28" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LossFunctions]] deps = ["Markdown", "Requires", "Statistics"] @@ -1468,9 +1488,9 @@ weakdeps = ["CategoricalArrays"] [[deps.Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7f26c8fc5229e68484e0b3447312c98e16207d11" +git-tree-sha1 = "abf88ff67f4fd89839efcae2f4c39cbc4ecd0846" uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" -version = "1.10.0+0" +version = "1.10.0+1" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] @@ -1480,9 +1500,9 @@ version = "2024.2.0+0" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "19d4bd098928a3263693991500d05d74dbdc2004" +git-tree-sha1 = "7715e65c47ba3941c502bffb7f266a41a7f54423" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.2.2+0" +version = "4.2.3+0" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1492,9 +1512,9 @@ version = "0.1.11" [[deps.MPItrampoline_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "8c35d5420193841b2f367e658540e8d9e0601ed0" +git-tree-sha1 = "70e830dab5d0775183c99fc75e4c24c614ed7142" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" -version = "5.4.0+0" +version = "5.5.1+0" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1522,6 +1542,7 @@ version = "0.4.2" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MathTeXEngine]] deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] @@ -1538,7 +1559,7 @@ version = "2.2.0" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1547,9 +1568,9 @@ version = "0.3.2" [[deps.Meshes]] deps = ["Bessels", "CircularArrays", "Colorfy", "CoordRefSystems", "DelaunayTriangulation", "Distances", "LinearAlgebra", "NearestNeighbors", "Random", "Rotations", "ScopedValues", "SparseArrays", "StaticArrays", "StatsBase", "TransformsBase", "Unitful"] -git-tree-sha1 = "4bfb347bf00680ff85785ef56201318b2875d4f8" +git-tree-sha1 = "589776c25a20607172b5d39af3059d8ad976e572" uuid = "eacbb407-ea5a-433e-ab97-5258b1ca43fa" -version = "0.50.2" +version = "0.52.0" weakdeps = ["Makie"] [deps.Meshes.extensions] @@ -1575,6 +1596,7 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.MosaicViews]] deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"] @@ -1584,13 +1606,13 @@ version = "0.3.4" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.NCDatasets]] deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"] -git-tree-sha1 = "a640912695952b074672edb5f9aaee2f7f9fd59a" +git-tree-sha1 = "77df6d3708ec0eb3441551e1f20f7503b37c2393" uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" -version = "0.14.4" +version = "0.14.5" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1611,9 +1633,9 @@ version = "0.14.3" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "91a67b4d73842da90b526011fa85c5c4c9343fe0" +git-tree-sha1 = "3cebfc94a0754cc329ebc3bab1e6c89621e791ad" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.18" +version = "0.4.20" [[deps.NelderMead]] git-tree-sha1 = "25abc2f9b1c752e69229f37909461befa7c1f85d" @@ -1664,14 +1686,14 @@ version = "1.3.5+1" [[deps.OhMyThreads]] deps = ["BangBang", "ChunkSplitters", "StableTasks", "TaskLocalValues"] -git-tree-sha1 = "8bb08c7c01208285bd3d01aa6dc78970ef7468ce" +git-tree-sha1 = "5f81bdb937fd857bac9548fa8ab9390a06864bb5" uuid = "67456a42-1dca-4109-a031-0a68de7e3ad5" -version = "0.6.0" +version = "0.7.0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] @@ -1704,9 +1726,9 @@ version = "5.0.5+0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a028ee3cb5641cccc4c24e90c36b0a4f7707bdf5" +git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.14+0" +version = "3.0.15+1" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1780,9 +1802,9 @@ version = "0.5.12" [[deps.PairPlots]] deps = ["Contour", "Distributions", "KernelDensity", "LinearAlgebra", "Makie", "Measures", "Missings", "NamedTupleTools", "OrderedCollections", "PolygonOps", "PrecompileTools", "Printf", "Requires", "StaticArrays", "Statistics", "StatsBase", "TableOperations", "Tables"] -git-tree-sha1 = "2ad5582a1ad71694e920e99469971eebf5abec59" +git-tree-sha1 = "8ac3c155cd478457f4919bdde030382f464cbe73" uuid = "43a3c2be-4208-490b-832a-a21dcd55d7da" -version = "2.9.0" +version = "2.9.2" [deps.PairPlots.extensions] MCMCChainsExt = "MCMCChains" @@ -1825,9 +1847,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.43.4+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PkgVersion]] deps = ["Pkg"] @@ -1836,15 +1862,15 @@ uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688" version = "0.3.3" [[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "StableRNGs", "Statistics"] +git-tree-sha1 = "650a022b2ce86c7dcfbdecf00f78afeeb20e5655" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.4.1" +version = "1.4.2" [[deps.PlyIO]] -git-tree-sha1 = "74619231a7aa262a76f82ae05c7385622d8a5945" +git-tree-sha1 = "40cae522a94143cbad947cbe6071eb51037df624" uuid = "42171d58-473b-503a-8d5f-782019eb09ec" -version = "1.1.2" +version = "1.2.0" [[deps.PolygonOps]] git-tree-sha1 = "77b3d3605fc1cd0b42d95eba87dfcd2bf67d5ff6" @@ -1877,13 +1903,14 @@ version = "1.4.3" [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "66b20dd35966a748321d3b2537c4584cf40387c7" +git-tree-sha1 = "1101cd475833706e4d0e7b122218257178f48f34" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.3.2" +version = "2.4.0" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] @@ -1892,9 +1919,9 @@ uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.2" [[deps.PtrArrays]] -git-tree-sha1 = "f011fbb92c4d401059b2212c05c0601b70f8b759" +git-tree-sha1 = "77a42d78b6a92df47ab37e177b2deac405e1c88f" uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" -version = "1.2.0" +version = "1.2.1" [[deps.QOI]] deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] @@ -1904,9 +1931,15 @@ version = "1.0.0" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "e237232771fdafbae3db5c31275303e056afaa9f" +git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.10.1" +version = "2.11.1" + + [deps.QuadGK.extensions] + QuadGKEnzymeExt = "Enzyme" + + [deps.QuadGK.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.Quaternions]] deps = ["LinearAlgebra", "Random", "RealDot"] @@ -1915,12 +1948,14 @@ uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0" version = "0.7.6" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.RangeArrays]] git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" @@ -1939,9 +1974,9 @@ weakdeps = ["FixedPointNumbers"] [[deps.ReadVTK]] deps = ["Base64", "CodecZlib", "Downloads", "LightXML", "Reexport", "VTKBase"] -git-tree-sha1 = "1cf259bfef9b0e9b8f9f03df4b8f94d7db564d0b" +git-tree-sha1 = "d844fe96622d6a5482bc8f7f0a9a347e95d49cf8" uuid = "dc215faf-f008-4882-a9f7-a79a826fadc3" -version = "0.2.2" +version = "0.2.3" [[deps.RealDot]] deps = ["LinearAlgebra"] @@ -1974,15 +2009,15 @@ version = "1.3.0" [[deps.Rmath]] deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4" uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" +version = "0.8.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e60724fd3beea548353984dc61c943ecddb0e29a" +git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.3+0" +version = "0.5.1+0" [[deps.Rotations]] deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays"] @@ -2005,9 +2040,9 @@ version = "0.7.0" [[deps.SIMD]] deps = ["PrecompileTools"] -git-tree-sha1 = "2803cab51702db743f3fda07dd1745aadfbf43bd" +git-tree-sha1 = "98ca7c29edd6fc79cd74c61accb7010a4e7aee33" uuid = "fdea26ae-647d-5447-a871-4b548cad5224" -version = "3.5.0" +version = "3.6.0" [[deps.SQLite_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2041,6 +2076,7 @@ version = "1.4.5" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2056,9 +2092,9 @@ version = "0.4.1" [[deps.Shapefile]] deps = ["DBFTables", "Extents", "GeoFormatTypes", "GeoInterface", "GeoInterfaceMakie", "GeoInterfaceRecipes", "OrderedCollections", "RecipesBase", "Tables"] -git-tree-sha1 = "52472ea9c28d92896fa89f62e65439d68b66c0d1" +git-tree-sha1 = "899f3a955d8e21f9807a3ece87dd9b46d45aac9f" uuid = "8e980c4a-a4fe-5da2-b3a7-4b4b0353a2f4" -version = "0.13.0" +version = "0.13.1" [deps.Shapefile.extensions] ShapefileMakieExt = "Makie" @@ -2071,6 +2107,7 @@ version = "0.13.0" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" [[deps.ShiftedArrays]] git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16" @@ -2102,13 +2139,14 @@ uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47" version = "0.1.3" [[deps.Snappy]] -deps = ["snappy_jll"] -git-tree-sha1 = "a8ceeb14e9f2bd62c0188d67fd88233b8bfa4684" +deps = ["CEnum", "snappy_jll"] +git-tree-sha1 = "098adf970792fd9404788f4558e94958473f7d57" uuid = "59d4ed8c-697a-5b28-a4c7-fe95c22820f9" -version = "0.4.0" +version = "0.4.3" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -2119,7 +2157,7 @@ version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -2149,6 +2187,12 @@ git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" +[[deps.StableRNGs]] +deps = ["Random"] +git-tree-sha1 = "83e6cce8324d49dfaf9ef059227f91ed4441a8e5" +uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" +version = "1.0.2" + [[deps.StableTasks]] git-tree-sha1 = "073d5c20d44129b20fe954720b97069579fa403b" uuid = "91464d47-22a1-43fe-8b7f-2d57ee82463f" @@ -2194,9 +2238,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.3" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2212,9 +2261,9 @@ version = "0.34.3" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +git-tree-sha1 = "b423576adc27097764a90e163157bcfc9acf0f46" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.1" +version = "1.3.2" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -2223,9 +2272,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsLearnModels]] deps = ["ColumnSelectors", "DataScienceTraits", "DecisionTree", "Distances", "Distributions", "GLM", "NearestNeighbors", "StatsBase", "TableTransforms", "Tables"] -git-tree-sha1 = "28ee42e52f36db5a1dccf87c251f3aacacde3da8" +git-tree-sha1 = "b8c485cd6a72f6895cb3930622fb24205c52551a" uuid = "c146b59d-1589-421c-8e09-a22e554fd05c" -version = "0.3.2" +version = "0.3.4" [deps.StatsLearnModels.extensions] StatsLearnModelsMLJModelInterfaceExt = "MLJModelInterface" @@ -2241,9 +2290,9 @@ version = "0.7.4" [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" +version = "0.4.0" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] @@ -2264,6 +2313,10 @@ git-tree-sha1 = "159331b30e94d7b11379037feeb9b690950cace8" uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" version = "1.11.0" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2271,7 +2324,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.TOML]] deps = ["Dates"] @@ -2280,9 +2333,9 @@ version = "1.0.3" [[deps.TableDistances]] deps = ["CategoricalArrays", "CoDa", "DataScienceTraits", "Distances", "Statistics", "Tables"] -git-tree-sha1 = "794fab7ca4c9f5329f866b18db13cb8bcd31b10e" +git-tree-sha1 = "9bad57c0c7d4c526951408d71eac02525f1f28a3" uuid = "e5d66e97-8c70-46bb-8b66-04a2d73ad782" -version = "0.4.4" +version = "0.4.5" [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] @@ -2298,9 +2351,9 @@ version = "1.0.1" [[deps.TableTransforms]] deps = ["AbstractTrees", "CategoricalArrays", "CoDa", "ColumnSelectors", "DataScienceTraits", "Distributed", "Distributions", "InverseFunctions", "LinearAlgebra", "NelderMead", "PrettyTables", "Random", "Statistics", "StatsBase", "Tables", "TransformsBase", "Unitful"] -git-tree-sha1 = "0728e42e277c3092654f0808132df22ef7646508" +git-tree-sha1 = "300d240b1f55e12754903c9d9b33c30c7e949e58" uuid = "0d432bfd-3ee1-4ac1-886a-39f05cc69a3e" -version = "1.33.3" +version = "1.33.8" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] @@ -2314,9 +2367,9 @@ uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" version = "1.10.0" [[deps.TaskLocalValues]] -git-tree-sha1 = "eb0b8d147eb907a9ad3fd952da7c6a053b29ae28" +git-tree-sha1 = "d155450e6dff2a8bc2fcb81dcb194bd98b0aeb46" uuid = "ed4db957-447d-4319-bfb6-7fa9ae7ecf34" -version = "0.1.1" +version = "0.1.2" [[deps.TensorCore]] deps = ["LinearAlgebra"] @@ -2327,11 +2380,7 @@ version = "0.1.1" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.TestItems]] -git-tree-sha1 = "42fd9023fef18b9b78c8343a4e2f3813ffbcefcb" -uuid = "1c621080-faea-4a02-84b6-bbd5e436b8fe" -version = "1.0.0" +version = "1.11.0" [[deps.Thrift2]] deps = ["MacroTools", "OrderedCollections", "PrecompileTools"] @@ -2347,9 +2396,9 @@ version = "0.16.0+0" [[deps.TiffImages]] deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "SIMD", "UUIDs"] -git-tree-sha1 = "bc7fd5c91041f44636b2c134041f7e5263ce58ae" +git-tree-sha1 = "38f139cc4abf345dd4f22286ec000728d5e8e097" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.10.0" +version = "0.10.2" [[deps.TiledIteration]] deps = ["OffsetArrays", "StaticArrayInterface"] @@ -2358,17 +2407,18 @@ uuid = "06e1c1a7-607b-532d-9fad-de7d9aa2abac" version = "0.5.0" [[deps.TranscodingStreams]] -git-tree-sha1 = "e84b3a11b9bece70d14cce63406bbc79ed3464d2" +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.11.2" +version = "0.11.3" [[deps.Transducers]] -deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] -git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "7deeab4ff96b85c5f72c824cae53a1398da3d1cb" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.82" +version = "0.4.84" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -2376,6 +2426,7 @@ version = "0.4.82" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" @@ -2402,6 +2453,7 @@ version = "1.4.6" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2410,6 +2462,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2446,9 +2499,9 @@ version = "1.4.2" [[deps.WellKnownGeometry]] deps = ["GeoFormatTypes", "GeoInterface"] -git-tree-sha1 = "af8adada82cfd2791bb1e39a87cbf538bb76fdaf" +git-tree-sha1 = "5b29dedd69787822220775b8baaea377173a2b02" uuid = "0f680547-7be7-4555-8820-bb198eeb646b" -version = "0.2.3" +version = "0.2.4" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] @@ -2463,9 +2516,9 @@ version = "1.6.1" [[deps.WriteVTK]] deps = ["Base64", "CodecZlib", "FillArrays", "LightXML", "TranscodingStreams", "VTKBase"] -git-tree-sha1 = "46664bb833f24e4fe561192e3753c9168c3b71b2" +git-tree-sha1 = "1d8042d58334ab7947ce505709df7009da6f3375" uuid = "64499a7a-5c06-52f2-abe2-ccb03c286192" -version = "1.19.2" +version = "1.21.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] @@ -2540,15 +2593,15 @@ version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +git-tree-sha1 = "555d1076590a6cc2fdee2ef1469451f872d8b41b" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.6+0" +version = "1.5.6+1" [[deps.Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "19c586905e78a26f7e4e97f81716057bd6b1bc54" +git-tree-sha1 = "f816633be6dc5c0ed9ffedda157ecfda0b3b6a69" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.70" +version = "0.6.72" [deps.Zygote.extensions] ZygoteColorsExt = "Colors" @@ -2605,7 +2658,7 @@ version = "0.15.2+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+1" +version = "5.11.0+0" [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2621,15 +2674,15 @@ version = "100.701.300+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +git-tree-sha1 = "b70c870239dc3d7bc094eb2d6be9b73d27bef280" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.43+1" +version = "1.6.44+0" [[deps.libsixel_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"] -git-tree-sha1 = "d4f63314c8aa1e48cd22aa0c17ed76cd1ae48c3c" +git-tree-sha1 = "7dfa0fd9c783d3d0cc43ea1af53d69ba45c447df" uuid = "075b6546-f08a-558a-be8f-8157d0f608a5" -version = "1.10.3+0" +version = "1.10.3+1" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2639,14 +2692,14 @@ version = "1.3.7+2" [[deps.libzip_jll]] deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "3282b7d16ae7ac3e57ec2f3fa8fafb564d8f9f7f" +git-tree-sha1 = "668ac0297e6bd8f4d53dfdcd3ace71f2e00f4a35" uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" -version = "1.10.1+0" +version = "1.11.1+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/_quarto.yml b/_quarto.yml index cca5149..56c5fec 100644 --- a/_quarto.yml +++ b/_quarto.yml @@ -46,4 +46,4 @@ format: mermaid: theme: dark -jupyter: julia-1.10 \ No newline at end of file +jupyter: julia-1.11 \ No newline at end of file diff --git a/preface.qmd b/preface.qmd index 6372ff4..c612a20 100644 --- a/preface.qmd +++ b/preface.qmd @@ -109,23 +109,23 @@ the code below in the Julia REPL: using Pkg # assert Julia version -@assert VERSION ≥ v"1.10" "requires Julia v1.10 or later" +@assert VERSION ≥ v"1.11" "requires Julia v1.11 or later" # create fresh environment pkg"activate @GDSJL" # install framework -pkg"add GeoStats@0.65.0" +pkg"add GeoStats@0.70.1" # install IO module -pkg"add GeoIO@1.17.6" +pkg"add GeoIO@1.18.6" # install viz modules pkg"add CairoMakie@0.12.2" -pkg"add PairPlots@2.9.0" +pkg"add PairPlots@2.9.2" # install other modules -pkg"add DataFrames@1.6.1" +pkg"add DataFrames@1.7.0" ``` If you need to reproduce the exact same environment with