diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml index 8cabddc..7fbbc51 100644 --- a/.github/workflows/python-app.yml +++ b/.github/workflows/python-app.yml @@ -48,6 +48,7 @@ jobs: python -mpip install Sphinx pydata-sphinx-theme sphinx_design numpydoc sphinx_copybutton cd doc make clean + python -mpip list make html mkdir -p ../public mv _build/html/* ../public/ diff --git a/colabseg/__init__.py b/colabseg/__init__.py index 903ca35..6fd7f53 100644 --- a/colabseg/__init__.py +++ b/colabseg/__init__.py @@ -5,3 +5,6 @@ # from tensorvoting_wrapper import * # from segmentation_gui import * + +from .new_gui_functions import ColabSegData +from .image_io import ImageIO \ No newline at end of file diff --git a/doc/Makefile b/doc/Makefile index f421501..d4bb2cb 100644 --- a/doc/Makefile +++ b/doc/Makefile @@ -5,7 +5,6 @@ # from the environment for the first two. SPHINXOPTS ?= SPHINXBUILD ?= sphinx-build -# SPHINXBUILD = python3.8 -m sphinx SOURCEDIR = . BUILDDIR = _build diff --git a/doc/_build/doctrees/environment.pickle b/doc/_build/doctrees/environment.pickle index 112811c..9a9c950 100644 Binary files a/doc/_build/doctrees/environment.pickle and b/doc/_build/doctrees/environment.pickle differ diff --git a/doc/_build/doctrees/reference/data_structures.doctree b/doc/_build/doctrees/reference/data_structures.doctree index 18430e1..222b8c6 100644 Binary files a/doc/_build/doctrees/reference/data_structures.doctree and b/doc/_build/doctrees/reference/data_structures.doctree differ diff --git a/doc/_build/doctrees/reference/gui_interactions.doctree b/doc/_build/doctrees/reference/gui_interactions.doctree index 3628556..9b99693 100644 Binary files a/doc/_build/doctrees/reference/gui_interactions.doctree and b/doc/_build/doctrees/reference/gui_interactions.doctree differ diff --git a/doc/_build/html/_sources/reference/data_structures.rst.txt b/doc/_build/html/_sources/reference/data_structures.rst.txt index e031397..a89cd45 100644 --- a/doc/_build/html/_sources/reference/data_structures.rst.txt +++ b/doc/_build/html/_sources/reference/data_structures.rst.txt @@ -9,12 +9,12 @@ ColabSegData .. autosummary:: :toctree: api/ - new_gui_functions.ColabSegData + ColabSegData ImageIO ~~~~~~~ .. autosummary:: :toctree: api/ - image_io.ImageIO + ImageIO diff --git a/doc/_build/html/_sources/reference/gui_interactions.rst.txt b/doc/_build/html/_sources/reference/gui_interactions.rst.txt index 921135c..980d716 100644 --- a/doc/_build/html/_sources/reference/gui_interactions.rst.txt +++ b/doc/_build/html/_sources/reference/gui_interactions.rst.txt @@ -1,17 +1,20 @@ GUI Interactions ================ +.. currentmodule:: colabseg + + Segmentation ~~~~~~~~~~~~ .. autosummary:: :toctree: api/ - colabseg.segmentation_gui.JupyterFramework - colabseg.tensorvoting_wrapper.generate_tensor_voting_gui + segmentation_gui.JupyterFramework + tensorvoting_wrapper.generate_tensor_voting_gui Controls ~~~~~~~~ .. autosummary:: :toctree: api/ - colabseg.py3dmol_controls.seg_visualization + py3dmol_controls.seg_visualization diff --git a/doc/_build/html/genindex.html b/doc/_build/html/genindex.html index 7c78552..bb3a28a 100644 --- a/doc/_build/html/genindex.html +++ b/doc/_build/html/genindex.html @@ -380,9 +380,9 @@

A

@@ -390,13 +390,13 @@

A

B

@@ -408,9 +408,9 @@

C

  • calculate_and_plot_sphere_radii() (JupyterFramework method)
    • -
  • calculate_normals() (ColabSegData method) +
  • calculate_normals() (ColabSegData method)
    • -
  • checkFile() (ImageIO method) +
  • checkFile() (ImageIO method)
  • cluster_checkbox() (seg_visualization method)
    • @@ -423,17 +423,17 @@

    C