pyproject.toml

[build-system]
requires = ["setuptools", "numpy", "pytest", "pybind11"]
build-backend = "setuptools.build_meta"

[project]
name="pytme"
authors = [
  { name = "Valentin Maurer", email = "valentin.maurer@embl-hamburg.de" },
]
version="0.2.5"
description="Python Template Matching Engine"
readme="README.md"
requires-python = ">=3.11"
dependencies=[
    "mrcfile>=1.4.3",
    "numpy>=1.22.2,<2.0",
    "pyfftw>=0.13.1",
    "pytest>=6.2.5",
    "PyYAML>=6.0",
    "scikit-image>=0.19.0",
    "scikit_learn>=1.2.1",
    "scipy>=1.9.1",
    "pybind11",
    "psutil",
    "tifffile",
    "h5py",
]
license = {text = "Proprietary"}
classifiers = [
    "Programming Language :: Python :: 3",
    "Operating System :: OS Independent",
]

[project.optional-dependencies]
cupy = ["cupy-cuda12x", "voltools==0.6.0"]
pytorch = ["torch", "torchvision"]
jax = ["jax", "jaxlib"]
all = [
    "cupy",
    "voltools==0.6.0",
    "torch",
    "jax",
    "jaxlib"
]

[project.scripts]
match_template = "scripts:match_template.main"
estimate_ram_usage = "scripts:estimate_ram_usage.main"
preprocessor_gui = "scripts:preprocessor_gui.main"
preprocess = "scripts:preprocess.main"
postprocess = "scripts:postprocess.main"

[project.urls]
"Homepage" = "https://github.com/KosinskiLab/pyTME"

[tool.setuptools]
include-package-data = true

[tool.pytest.ini_options]
addopts = [
    "--import-mode=importlib",
]

[tool.coverage.run]
omit = [
    "tests/*"
]